BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476280
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71500.1 | Symbols: | Rieske (2Fe-2S) domain-containing pro... 1613 0.0
> AT1G71500.1 | Symbols: | Rieske (2Fe-2S) domain-containing protein
| chr1:26935982-26937607 FORWARD LENGTH=1242
Length=1242
Score = 1613 bits (873), Expect = 0.0
Identities = 1121/1232 (91%), Gaps = 51/1232 (4%)
Strand=Plus/Plus
Query 1 GGCTACCATCGTTCTTCTTCTTTTTCGTTATCCACTTGTCTCTCTCCTTTGTGTGGTGAA 60
||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||| ||
Sbjct 1 GGCTACCATTATTCTTCTTCTTCTTCGTTATCCAC-T-TCTCTCTCCTTTGTGTGGTCAA 58
Query 61 ATGCATTTCCCTCCATTCTCTTTCGCTCTCTCTCACACTCGTCCATGGCGACCACCGCAT 120
|||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||||
Sbjct 59 ATGCATTTCCCTCCATTCTCTTACGCTTTCTCTCACTCTCGTCAATGGCGACCACCGCAT 118
Query 121 CTTCGTCTCTCCCTCGAAATTACTCCTTCACACCTCCTCGTCCTCCTCCATC-TTCAATC 179
|||| |||||||| || ||||||||||||||| |||| || ||| | |||| ||| |||
Sbjct 119 CTTCATCTCTCCCCCGTAATTACTCCTTCACAACTCCGCGACCT--T-CATCATTC-ATC 174
Query 180 CGCGGA---CC--T-G---GAACGCTGCCGCTTTATCTCCGCCGTAACCGACG-GTTAGC 229
|| ||| || | | |||||||||| || ||||||||||||||||| || | ||||
Sbjct 175 CGAGGACCGCCATTAGCTAGAACGCTGCCTCTCTATCTCCGCCGTAACCGTCGAG-TAGC 233
Query 230 TTTAACTTACCGATTGGACCAGAATTCGAAGCGGAGAAGTGGTGGTGGAAACGTAAGATG 289
| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 234 TCTCACTTACCGATTGGACCAGAATTCGAAGCAGAGAA---GTGGTGGAAACGTAAGATG 290
Query 290 CGAGGCGACGGAGGTATCTTCTTCTTCGTCTGTATCCACACCTGGAAGGAATTGGGTGCC 349
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 291 CGAGGCGACGGAGGTATCTTCTTCTTCTTCTGTATCCACACCTGGAAGGAATTGGGTGCC 350
Query 350 GGTTGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTAATTCAAGACGATGA 409
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 351 GGTGGTGCCGTTATCGGCGCTTCCGAAAGGTGAACGGCGAGTGGTTATTCAAGACGATGA 410
Query 410 GACGATATTGTTGCTTTGGTATAAGAACGATGTGTTTGCTATTGAGAATCGTTCTCCTGC 469
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||
Sbjct 411 GACGATATTGTTGCTTTGGTATAAGAACGATGTTTTTGCAATTGAGAATCGTTCACCAGC 470
Query 470 TGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGT 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGAAGGAGCTTATAGCGAAGGACTTCTCAACGCTAGGCTCACTCAGGATGGTTGCATTGT 530
Query 530 GTGCCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCC 589
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTGTCCATCGACGGATAGTACGTTTGATCTTAGAACTGGAGAGATCCGGGAATGGTACCC 590
Query 590 GAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTGTACCCTGT 649
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 591 GAAAAACCCGGTTCTCAGAGTCTTGACACCTGCACTGAGGAAACTATTTGTATACCCTGT 650
Query 650 CAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGTGGGAAAACAGAGGCAGC 709
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 651 CAAATATGATGAGGAAAACATCTATATCAGCATTAGAGACAGCGGGAAAACAGAGGCAGC 710
Query 710 TGCTGAGATTGTGTTTAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGT 769
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGCTGAGATCGTCTTCAGTGGAAAAGCTCAGCCTGGGCTCACAGCAACAAACGTCAATGT 770
Query 770 AGATGAGGTGAGAATGATTGTGGACGAGGGGTCTGAAGGATTTGGTTTCACGGTGAAGAA 829
||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 771 AGACGAGGTGAGAATGATTGTGGACGAGGGTTCTGAAGGATTTGGTTTCACGAAGAAGAA 830
Query 830 CGAAGTGATAAATGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTTGAGCT 889
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 831 CGAAGTGATAAACGGGAAGGCGGCAGTGATAGGATTCTTGCTGCTGTTAGATTTCGAGCT 890
Query 890 ATTGACAGGTAAAGGTCTATTGAAGGGAACAGGATTCTTGGACTTCCTTTACTCTGCTTC 949
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 891 ATTGACAGGTAAAGGTCTATTGAAAGGAACAGGGTTCTTGGACTTCCTTTACTCTGCTTC 950
Query 950 AGATGCTTTCAAGTAGAGATAATATCATTGTTGGTCTGCTTTTGCTTGCCTCGTTTGTGC 1009
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 951 AGATGCTTTCAAGTAGAGGTAATATCTTTGTTGGTCTGGTTTTGCTTGCCTCCTTTGTGC 1010
Query 1010 AGTTTGCCGAGAAACaaaaaaaaaTACTTCCGGAACTACTCACACCATGTCTTAGTATAT 1069
|||||||||||||||||||||||| | || | || | |||| ||||||||
Sbjct 1011 AGTTTGCCGAGAAACAAAAAAAAA-A-------AA--A---AC-C-ATGTAATAGTATAT 1055
Query 1070 AGAGATGGCTTTGCTCTGTCTTTGTTTGTGTTTTACCCTCTTATACGAGATATTCTTTCT 1129
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 1056 AGAGATGGCTTTGCTCTGTCTTTCTTTGTGTTT-ACCC-CTTATACGAGATATTCTTTCT 1113
Query 1130 TCTTCGTGAATTCAA-TT-TAA-----AACCTT-CT-A-TCTGTTTTGT-TT-GACATAC 1177
||| | ||| ||||| || ||| || ||| | | | | |||||| || |||||||
Sbjct 1114 TCTCCTTGAGTTCAAATTATAATCTTCAAGCTTTCCCACTATCTTTTGTATTTGACATAC 1173
Query 1178 AACACTTCG-ATTTCATTGGATGAAACAAAAA 1208
||||| || |||| ||||| |||||||||||
Sbjct 1174 AACACCTCATATTTGATTGGGTGAAACAAAAA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59337044190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5