BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476281

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71520.1 | Symbols:  | Integrase-type DNA-binding superfamil...   627    4e-179


> AT1G71520.1 | Symbols:  | Integrase-type DNA-binding superfamily 
protein | chr1:26938525-26939106 FORWARD LENGTH=582
Length=582

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 475/537 (88%), Gaps = 24/537 (4%)
 Strand=Plus/Plus

Query  1    TCTACCCGACTTTATTCTGCTTTCAACGTATTTATATTCGACA-TTTCCTCTCAAGATCA  59
            ||||| ||||||||||| || |||||||||||||||| | ||| ||||| |||| |||| 
Sbjct  1    TCTACACGACTTTATTCCGC-TTCAACGTATTTATATGCAACATTTTCC-CTCATGATCT  58

Query  60   TATAATCTCATCTTCATGCACCCAAAAA-ATGGACTCAAGAG---CCGGAGAAACTGATC  115
            ||||||||||||||||| |||||||||| ||||| |||||||   ||||||||||||| |
Sbjct  59   TATAATCTCATCTTCATCCACCCAAAAACATGGATTCAAGAGACACCGGAGAAACTGACC  118

Query  116  AAAGCAAGTACAAAGGTATCCGTCGTCGAAAATGGGGAAAATGGGTATCAGAGATTCGTG  175
            | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  119  AGAGCAAGTACAAAGGTATCCGTCGTCGGAAATGGGGAAAATGGGTATCAGAGATTCGTG  178

Query  176  TTCCGGGAACTCGTCAACGTCTTTGGTTAGGCTCTTTCTCCACCGCCGAAGGCGCTGCCG  235
            | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  179  TCCCGGGAACTCGTCAACGTCTCTGGTTAGGCTCTTTCTCCACCGCAGAAGGCGCTGCCG  238

Query  236  TAGCCCACGACGTCGCTTTTTACTGCTTGCACCGACTATCTTCCCTCGACGATGAAGCTT  295
            |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct  239  TAGCCCACGACGTCGCTTTTTACTGCTTGCACCGACCATCTTCCCTCGACGACGAATCTT  298

Query  296  TTAACTTCCCTCGTTTGCTCCCAACCTCCCTCGCCTCCAATACATCTCCTAAGTCAATCC  355
            ||||||||||||  || ||  ||||||||||||||||||||| |||||||||||| ||||
Sbjct  299  TTAACTTCCCTCACTTACTTACAACCTCCCTCGCCTCCAATATATCTCCTAAGTCCATCC  358

Query  356  AAAAAGCAGCTTCCGACGCTGGCATGGCCGTCGACGCCGGTTTCAACATAAACAACGATT  415
            ||||||| ||||||||||| ||||||||||| |||||||| |||  |||       | | 
Sbjct  359  AAAAAGCTGCTTCCGACGCCGGCATGGCCGTGGACGCCGGATTC--CATG------G-T-  408

Query  416  CTGCTGTGTCTGGGAGTGGTGGTTGTGAAGATAGATCTTCCATGGCGGCGAATATGGAAG  475
              ||||||||||||||||||||||||||||| |||||||||||||||   |||||||| |
Sbjct  409  --GCTGTGTCTGGGAGTGGTGGTTGTGAAGAGAGATCTTCCATGGCG---AATATGGAGG  463

Query  476  AGGACAATGAACTTAGTATTTCCGTGTACGATTAT-TTGGAAGACGATCTTGTTTGA  531
            ||||  |  |||||||||| |||||||| |||||| ||| |||||||||| ||||||
Sbjct  464  AGGAGGACAAACTTAGTATCTCCGTGTATGATTATCTTG-AAGACGATCTCGTTTGA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5