BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476282
Length=2911
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71528.1 | Symbols: | other RNA | chr1:26939562-26942952 RE... 2159 0.0
AT1G71530.1 | Symbols: | Protein kinase superfamily protein | ... 706 0.0
> AT1G71528.1 | Symbols: | other RNA | chr1:26939562-26942952
REVERSE LENGTH=3255
Length=3255
Score = 2159 bits (1169), Expect = 0.0
Identities = 1372/1465 (94%), Gaps = 34/1465 (2%)
Strand=Plus/Minus
Query 1273 CAGCTGCTGAGATAATTATCCTTTTTGGCTTCTCAGGTGGAGCAGATGCACAAGATCTTT 1332
|||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1834 CAGCTGATGAGATAATTATCCTTTTTTGTTTATCAGGTGGAGCAGATGCACAAGATCTTT 1775
Query 1333 AAGCTCTGTGGTTCACCCTCGGAAGATTACTGGAGAAGAGCAACACTGCCACTAGCAACA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 AAGCTCTGTGGTTCACCCTCGGAAGATTACTGGAGAAGAGCAACACTGCCACTAGCAACA 1715
Query 1393 AGCTTTAAACCGAGTCATCCTTACAAGCCTGTTCTTGCTGAAACCTTTAACCACTTCCCA 1452
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1714 AGCTTTAAACCCAGTCATCCTTACAAGCCTGTTCTTGCTGAAACCTTTAACCATTTCCCT 1655
Query 1453 CCATCAGCTCTGATGCTCATCAATAAGCTACTGGCAATAGAACCTGAAAAACGGGGATCC 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 TCATCAGCTCTGATGCTCATCAATAAGCTACTGGCAATAGAACCTGAAAAACGGGGATCG 1595
Query 1513 GCTGCTTCTACCTTGAGGAGCGAAGTAATATATCGATACT-------AA--CATGTTTCT 1563
|||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 1594 GCTGCTTCTACCTTGAGGAGCGAAGTAATAGATCGATACTAACCAGAAATCCATGTTTCT 1535
Query 1564 TAAACAAGTTATTAGATGCA-TTCTCATGATCG-GTTTAAAACTTTCTTCTCTTCAGTTC 1621
||||||||||||||||| || |||||||||| | |||| || ||||||||||||||||||
Sbjct 1534 TAAACAAGTTATTAGATACATTTCTCATGAT-GAGTTTCAATCTTTCTTCTCTTCAGTTC 1476
Query 1622 TTCACCACGGAGCCACTCCCTGCTAATCCATCAAGCTTACCTAGATACCCACCAAGCAAG 1681
||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||
Sbjct 1475 TTCACCACGGAGCCACTCCCTGCGAATCCATCAAACTTACCTAGATATCCACCAAGCAAG 1416
Query 1682 GAACTTGATGCTAAGCTTCGCAACGAAGAAGCAAGAAAGTAAAGCTACATACATCTTCAT 1741
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 GAACTTGATGCCAAGCTTCGCAACGAAGAAGCAAGAAAGTAAAGCTACATACATCTTCAT 1356
Query 1742 TCGCTAGTCCTTCTCTTgggggggTTTTCTAATGAAAGTTTTGTTTGCAGACAAAGGGCA 1801
|| |||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1355 TCACTAGTCTTTCTCTT--GGGGGTTTTCTGATGAAAGTTTTGTTTGCAGACTAAGGGCA 1298
Query 1802 GAAGGTAACAAGAGAAGAGGGGGAGAAACTGTGACAAGAGGACGGCCAAAGGATCTCAAA 1861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1297 GAAGGTAACAAGAGAAGAGGGGGAGAAACTGTGACAAGAGGACGGCCAAAGGATCTTAAA 1238
Query 1862 ACAGCCCAGACACCTGAGTTTATGGCCGCAGGGCAGTCCAAAGTCACATGCATAAGCCAT 1921
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1237 ACAGCCCAGACACCAGAGTTTATGGCTGCAGGACAGTCCAAAGTCACATGCATAAGCCAC 1178
Query 1922 AAGTTCAAAACAGACGAGGAAGGTGGCACCGGGTTTAGGATAGAACCACCAAGAAGAGGG 1981
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AAATTCAAAACAGACGAGGAAGGTGGCACCGGGTTTAGGATAGAACCACCAAGAAGAGGG 1118
Query 1982 ATCCAGCAGAATGGTAAAGCTCATGCTTCTTCAATGGTTCACCCAACTGTGGCTGATACA 2041
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1117 ATCCAGCAGAATGGTAAAGCTCATGCTTCTTCAATGGTTCACCCAACAGTGGCTGATACA 1058
Query 2042 GAATGGAACAGAGGTGGAAGCATCAGAAGACAAACTAATGCAGAGCTGAAGTCTAAAATA 2101
||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| | |
Sbjct 1057 GAATGGAACGGAGGTGGAAGCATCAAAAGACAAACTAATGCAGAGATGAAGTCTAGGACA 998
Query 2102 TCTCAAACAGGAGACTTGTCTGGTGAATCTTATAGGAGAGATTCCAACAGAGATTACTCA 2161
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 997 TCTCAAACAGGAGACTTGTCTGGTGAATCTTATAGGAGAGATCCCAACAGAGATTACTCA 938
Query 2162 ACCGTAAG-C-CTCCTCTTGTTATATTGTGTACGTCAA-CCTCTTGGTATGTAATTATTA 2218
|||||||| | ||||||||||||||| |||||| | || ||| |||||||||||||||||
Sbjct 937 ACCGTAAGTCTCTCCTCTTGTTATATCGTGTACCTTAAACCTTTTGGTATGTAATTATTA 878
Query 2219 TTAAGTTGTTTTGGGCTGTGTCA---GGGCAATGCACCAAGGAAAAACAGAATCAATTAC 2275
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 877 --A-GTTGCTTTGGGCTGTGTCATCAGGGCAATGCACCAAGGAAAAACAGAATCAATTAC 821
Query 2276 TCAGGACCATTGATGCCTCCTGGTGGGAATCTTGAAGATTTGCTTAAAGAGCATGAGAAG 2335
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 820 TCAGGACCATTGATGCCTCCTGGTGGAAATCTTGAAGATTTGCTTAAAGAGCATGAGAAG 761
Query 2336 CAGATCCAACAAGCTGTCCGCAAATCCCGTGTGGAAAAGTCTGCATCAAGGAAAAACCAA 2395
|||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||
Sbjct 760 CAGATCCAACAAGCTGTCCGCAAAGCACGTGTAGAAAAGTCTGCATCAAGAAAAAACCAA 701
Query 2396 GCTTTAACAGGACAACAACAGCAGCAACGATACACAGGAAGAAATGCTCGGTAGCTAAAA 2455
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 700 GCTTTAACAGGACAACAACAGCAGCAACGTTACACAGGAAGAAATGCTCGGTAGCTGAAA 641
Query 2456 GaaaaaaaaaaaaaaGCCATAGAACTCATAAGCGTTTTTGTTGTTGTTGTGCCTCTTCTG 2515
|| || || || |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 640 -AAGGGAACAAGAA-GCCATAGAACTCATAAGCGTTTTTGTTGTTGT-G--CCTCTTCTG 586
Query 2516 TGCTTGAAGCCAGGGATTGATACAATGTATAGTCGA-TTTGTTTCTTAGGCCAACAAGAT 2574
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 585 TGCTTGAAGCCAGGGATTGATACAATGTATAGTCGAATTTGTTTCTTAGGCCAACAAGAT 526
Query 2575 TGACCACACTATAATGTCAAGCTACCTTTTGTATATACACAAGGTCTATCTATTGAGTTG 2634
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 525 TGACTACACTATAATGTCAAGCTACCTTTTGTATATACACAAGGTCTCTCTATTGAGTTG 466
Query 2635 AGTcaaacaaacaaacatgtatttgcaaggcaaagcaaaaacaaaaactccaaaTTTGCT 2694
||||||||||||||| |||||| ||||||| |||||||||| | ||||||||||||
Sbjct 465 AGTCAAACAAACAAAGATGTATCTGCAAGGGAAAGCAAAAA-AT----TCCAAATTTGCT 411
Query 2695 ACATTCTATGATTCTGGCTCAGCTC 2719
||||||||||||||| |||||||||
Sbjct 410 ACATTCTATGATTCTAGCTCAGCTC 386
Score = 1698 bits (919), Expect = 0.0
Identities = 1054/1119 (94%), Gaps = 9/1119 (1%)
Strand=Plus/Minus
Query 158 TTTTGTAATGGGTTGTATTTGTGCCACCGCCCGTTCACCAAGCGCCGCCGTTACCGATAA 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3058 TTTTGTAATGGGTTGTATTTGTGCCACCGCCCGTTCACCAAGCGCCGCCGTTACCGATAA 2999
Query 218 AGACCTATTAGATTCCAGCAAATCCATCCTTCAAC-TCATCCCTCATCATCCTCCGTCGT 276
||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 2998 AGATCTATTAGATTCCAGCAAATCCATCCTTCAACTTC-TCCCTCATCATCCCCCGTCGT 2940
Query 277 CTTCGTCTTCATCCAAAAAGGAAGGATCTTTCACACGTACGACTTCTTCGGCTTCCATCA 336
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2939 CTTCGTCTTCATCCAAGAAGGAAGGATCTTTCACACGTACGACTTCTTCAGCTTCTATCA 2880
Query 337 CCATTGTGGCTAATGGTTATCCTGTGGCGCGCCGTCCCTCCACGTCATCCGATCGAAACA 396
|||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 2879 CCATTGTGGCTAATGGTTATCCTGTGGCACGCCGTCCTTCCACTTCATCTGATCGAAACA 2820
Query 397 GCACTAAACCGGTGGTTATTGTGGGAGCTCCGACTAGGAACCCCACCAGAAGAGTTACGG 456
|||| |||||||| ||| |||||||||||||||| || || || || |||||||| || |
Sbjct 2819 GCACCAAACCGGTCGTTGTTGTGGGAGCTCCGACCAGAAATCCAACAAGAAGAGTCACCG 2760
Query 457 CTATACCGGTTGCGCAGCCATCGCAGCAGCAGACAGGACGTGTGATGAACAATAAAACCG 516
||||||||||||| ||||| | ||||||||| ||| ||||||||| | ||||||||| |
Sbjct 2759 CTATACCGGTTGCACAGCCGGCACAGCAGCAGCCAGCACGTGTGATCAGCAATAAAACGG 2700
Query 517 AACTCACCGGC-GCAGAATGGCCGTCTTGGTTGGCTTCTGTTGCCGGAGAAGCAATTAAA 575
||||| || || |||||||||||||||||| ||||||||||||| || || || ||||||
Sbjct 2699 AACTC-CCTGCTGCAGAATGGCCGTCTTGGCTGGCTTCTGTTGCTGGGGAGGCCATTAAA 2641
Query 576 GGATGGGTTCCTCGCTGCGCAGAGTCAGCAGCGTATACAAAGCTAGAGACCTTGAAACGG 635
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2640 GGATGGGTTCCTCGCTGCGCAGAGTCAGCAGCGTGTACAAAGCTAGAGACCTTGAAACGG 2581
Query 636 GAAAGATTGTGGCGATGAAGAAAGTTCGGTTTGTGAACATGGATCCAGAGAGTGTCCGGT 695
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2580 GGAAGATTGTGGCGATGAAGAAAGTTCGGTTTGTGAACATGGATCCAGAGAGTGTTCGGT 2521
Query 696 TTATGGCCAGGGAGATTCTCATTCTTCGTAAGCTTGATCACCCCAATGTTATGAAGCTAG 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2520 TTATGGCCAGGGAGATTCTCATTCTTCGTAAGCTTGATCACCCCAATGTTATGAAGCTAG 2461
Query 756 AAGGTCTAGTCACCTCTAGACTCTCAGGTAGCCTCTACCTTGTCTTTGAGTACATGGAAC 815
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2460 AAGGTCTAGTTACCTCTAGACTCTCAGGTAGCCTCTACCTTGTCTTTGAGTACATGGAAC 2401
Query 816 ATGATCTCGCAGGTCTAGCCGCAACTCCTGGAATCAAATTCTCTGAACCTCAGGTATTAC 875
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 ACGATCTCGCAGGTCTAGCTGCAACTCCTGGAATCAAATTCTCTGAACCTCAGGTATTAC 2341
Query 876 ATAATTCTGTTTTCCTATACACTTTGAAAGATTGGA-ATATTCAAGTTAGA-AAAGAGTC 933
|| ||||||||||||||| ||| ||||||||||||| | ||||||||| | ||||||||
Sbjct 2340 AT-ATTCTGTTTTCCTATGCAC-TTGAAAGATTGGAGA-ATTCAAGTTTTATAAAGAGTC 2284
Query 934 TTACTTCGTTTTCAGATCAAGTGCTATATGCAGCAATTGTTCCGTGGGCTTGAACATTGC 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 CTACTTCGTTTTCAGATCAAGTGCTATATGCAGCAATTGTTCCGTGGGCTTGAACATTGC 2224
Query 994 CACAGACGAGGAATTCTCCATCGTGATATTAAAGGATCAAATCTCTTGATCAATAATGAA 1053
||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||
Sbjct 2223 CACAGACGAGGAATTCTTCACCGTGATATTAAAGGCTCAAATCTCTTAATCAATAATGAA 2164
Query 1054 GGTGTCTTGAAGATTGGTGATTTTGGATTGGCGAATTTTTACCGGGGTGATCAAGATCTG 1113
||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 2163 GGTGTCTTGAAGATTGGTGATTTCGGATTGGCGAATTTTTACCGAGGTGATGGAGATCTG 2104
Query 1114 CAGCTGACCAGTCGTGTTGTAACCTTATGGTACAGAGCACCTGAGCTGTTGCTCGGTGCC 1173
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2103 CAGCTGACCAGTCGTGTTGTGACCTTATGGTACAGAGCACCTGAGCTGTTGCTCGGTGCC 2044
Query 1174 ACTGAGTATGGACCAGCCATAGACCTGTGGAGCGCCGGCTGCATTCTCACTGAGCTCTTC 1233
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2043 ACTGAGTATGGACCAGCCATTGACCTGTGGAGCGCCGGCTGCATTCTCACTGAGCTCTTC 1984
Query 1234 GCCGGAAAGCCTATTATGCCAGGACGTACAGAAGTAATG 1272
|||||||| ||||||||||||||||| ||||||||||||
Sbjct 1983 GCCGGAAAACCTATTATGCCAGGACGCACAGAAGTAATG 1945
Score = 182 bits (98), Expect = 2e-44
Identities = 143/162 (88%), Gaps = 13/162 (8%)
Strand=Plus/Minus
Query 1 TTGAGTGGTACGCACGTTCCAGTTTTCTATGACAACAAACTCACAAAAACGTGAGAGAGA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3255 TTGAGTGGTACGCACGTTCCACTTTTCTATGACAACAAACTCACAAAAACGTGAGAGAGA 3196
Query 61 CAACAAAAA-TGAAAGATTTTGGTCGCCGACCATATCACC-AACACCAGAGTAGAGAGA- 117
||||||||| |||||| ||||||||||||||||||||||| || || | ||||||||||
Sbjct 3195 CAACAAAAAATGAAAGTTTTTGGTCGCCGACCATATCACCTAAGAC-ATAGTAGAGAGAA 3137
Query 118 T-AGA-A-AGATA-A-AGAA--AA-TCGGCAAAA-CTTAAGT 150
| ||| | ||||| | | || || ||||||||| || ||||
Sbjct 3136 TGAGAGATAGATAGATAAAAGCAAATCGGCAAAAACTAAAGT 3095
> AT1G71530.1 | Symbols: | Protein kinase superfamily protein
| chr1:26939567-26942952 FORWARD LENGTH=2813
Length=2813
Score = 706 bits (382), Expect = 0.0
Identities = 448/478 (94%), Gaps = 11/478 (2%)
Strand=Plus/Plus
Query 2243 GGCAATGCACCAAGGAAAAACAGAATCAATTACTCAGGACCATTGATGCCTCCTGGTGGG 2302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GGCAATGCACCAAGGAAAAACAGAATCAATTACTCAGGACCATTGATGCCTCCTGGTGGA 2020
Query 2303 AATCTTGAAGATTTGCTTAAAGAGCATGAGAAGCAGATCCAACAAGCTGTCCGCAAATCC 2362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2021 AATCTTGAAGATTTGCTTAAAGAGCATGAGAAGCAGATCCAACAAGCTGTCCGCAAAGCA 2080
Query 2363 CGTGTGGAAAAGTCTGCATCAAGGAAAAACCAAGCTTTAACAGGACAACAACAGCAGCAA 2422
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2081 CGTGTAGAAAAGTCTGCATCAAGAAAAAACCAAGCTTTAACAGGACAACAACAGCAGCAA 2140
Query 2423 CGATACACAGGAAGAAATGCTCGGTAGCTAAAAGaaaaaaaaaaaaaaGCCATAGAACTC 2482
|| |||||||||||||||||||||||||| ||| || || || || ||||||||||||
Sbjct 2141 CGTTACACAGGAAGAAATGCTCGGTAGCTGAAA-AAGGGAACAAGAA-GCCATAGAACTC 2198
Query 2483 ATAAGCGTTTTTGTTGTTGTTGTGCCTCTTCTGTGCTTGAAGCCAGGGATTGATACAATG 2542
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2199 ATAAGCGTTTTTGTTGTTGT-G--CCTCTTCTGTGCTTGAAGCCAGGGATTGATACAATG 2255
Query 2543 TATAGTCGA-TTTGTTTCTTAGGCCAACAAGATTGACCACACTATAATGTCAAGCTACCT 2601
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2256 TATAGTCGAATTTGTTTCTTAGGCCAACAAGATTGACTACACTATAATGTCAAGCTACCT 2315
Query 2602 TTTGTATATACACAAGGTCTATCTATTGAGTTGAGTcaaacaaacaaacatgtatttgca 2661
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct 2316 TTTGTATATACACAAGGTCTCTCTATTGAGTTGAGTCAAACAAACAAAGATGTATCTGCA 2375
Query 2662 aggcaaagcaaaaacaaaaactccaaaTTTGCTACATTCTATGATTCTGGCTCAGCTC 2719
||| |||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 2376 AGGGAAAGCAAAAA-AT----TCCAAATTTGCTACATTCTATGATTCTAGCTCAGCTC 2428
Score = 610 bits (330), Expect = 2e-173
Identities = 408/446 (91%), Gaps = 4/446 (1%)
Strand=Plus/Plus
Query 158 TTTTGTAATGGGTTGTATTTGTGCCACCGCCCGTTCACCAAGCGCCGCCGTTACCGATAA 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 TTTTGTAATGGGTTGTATTTGTGCCACCGCCCGTTCACCAAGCGCCGCCGTTACCGATAA 252
Query 218 AGACCTATTAGATTCCAGCAAATCCATCCTTCAACT-CATCCCTCATCATCCTCCGTCGT 276
||| |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct 253 AGATCTATTAGATTCCAGCAAATCCATCCTTCAACTTC-TCCCTCATCATCCCCCGTCGT 311
Query 277 CTTCGTCTTCATCCAAAAAGGAAGGATCTTTCACACGTACGACTTCTTCGGCTTCCATCA 336
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 312 CTTCGTCTTCATCCAAGAAGGAAGGATCTTTCACACGTACGACTTCTTCAGCTTCTATCA 371
Query 337 CCATTGTGGCTAATGGTTATCCTGTGGCGCGCCGTCCCTCCACGTCATCCGATCGAAACA 396
|||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 372 CCATTGTGGCTAATGGTTATCCTGTGGCACGCCGTCCTTCCACTTCATCTGATCGAAACA 431
Query 397 GCACTAAACCGGTGGTTATTGTGGGAGCTCCGACTAGGAACCCCACCAGAAGAGTTACGG 456
|||| |||||||| ||| |||||||||||||||| || || || || |||||||| || |
Sbjct 432 GCACCAAACCGGTCGTTGTTGTGGGAGCTCCGACCAGAAATCCAACAAGAAGAGTCACCG 491
Query 457 CTATACCGGTTGCGCAGCCATCGCAGCAGCAGACAGGACGTGTGATGAACAATAAAACCG 516
||||||||||||| ||||| | ||||||||| ||| ||||||||| | ||||||||| |
Sbjct 492 CTATACCGGTTGCACAGCCGGCACAGCAGCAGCCAGCACGTGTGATCAGCAATAAAACGG 551
Query 517 AACTCACCGGC-GCAGAATGGCCGTCTTGGTTGGCTTCTGTTGCCGGAGAAGCAATTAAA 575
||||| || || |||||||||||||||||| ||||||||||||| || || || ||||||
Sbjct 552 AACTC-CCTGCTGCAGAATGGCCGTCTTGGCTGGCTTCTGTTGCTGGGGAGGCCATTAAA 610
Query 576 GGATGGGTTCCTCGCTGCGCAGAGTC 601
||||||||||||||||||||||||||
Sbjct 611 GGATGGGTTCCTCGCTGCGCAGAGTC 636
Score = 608 bits (329), Expect = 9e-173
Identities = 357/371 (96%), Gaps = 0/371 (0%)
Strand=Plus/Plus
Query 1795 AAGGGCAGAAGGTAACAAGAGAAGAGGGGGAGAAACTGTGACAAGAGGACGGCCAAAGGA 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 AAGGGCAGAAGGTAACAAGAGAAGAGGGGGAGAAACTGTGACAAGAGGACGGCCAAAGGA 1650
Query 1855 TCTCAAAACAGCCCAGACACCTGAGTTTATGGCCGCAGGGCAGTCCAAAGTCACATGCAT 1914
||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1651 TCTTAAAACAGCCCAGACACCAGAGTTTATGGCTGCAGGACAGTCCAAAGTCACATGCAT 1710
Query 1915 AAGCCATAAGTTCAAAACAGACGAGGAAGGTGGCACCGGGTTTAGGATAGAACCACCAAG 1974
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 AAGCCACAAATTCAAAACAGACGAGGAAGGTGGCACCGGGTTTAGGATAGAACCACCAAG 1770
Query 1975 AAGAGGGATCCAGCAGAATGGTAAAGCTCATGCTTCTTCAATGGTTCACCCAACTGTGGC 2034
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1771 AAGAGGGATCCAGCAGAATGGTAAAGCTCATGCTTCTTCAATGGTTCACCCAACAGTGGC 1830
Query 2035 TGATACAGAATGGAACAGAGGTGGAAGCATCAGAAGACAAACTAATGCAGAGCTGAAGTC 2094
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1831 TGATACAGAATGGAACGGAGGTGGAAGCATCAAAAGACAAACTAATGCAGAGATGAAGTC 1890
Query 2095 TAAAATATCTCAAACAGGAGACTTGTCTGGTGAATCTTATAGGAGAGATTCCAACAGAGA 2154
|| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1891 TAGGACATCTCAAACAGGAGACTTGTCTGGTGAATCTTATAGGAGAGATCCCAACAGAGA 1950
Query 2155 TTACTCAACCG 2165
|||||||||||
Sbjct 1951 TTACTCAACCG 1961
Score = 532 bits (288), Expect = 5e-150
Identities = 312/324 (96%), Gaps = 0/324 (0%)
Strand=Plus/Plus
Query 945 TCAGATCAAGTGCTATATGCAGCAATTGTTCCGTGGGCTTGAACATTGCCACAGACGAGG 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TCAGATCAAGTGCTATATGCAGCAATTGTTCCGTGGGCTTGAACATTGCCACAGACGAGG 996
Query 1005 AATTCTCCATCGTGATATTAAAGGATCAAATCTCTTGATCAATAATGAAGGTGTCTTGAA 1064
|||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 997 AATTCTTCACCGTGATATTAAAGGCTCAAATCTCTTAATCAATAATGAAGGTGTCTTGAA 1056
Query 1065 GATTGGTGATTTTGGATTGGCGAATTTTTACCGGGGTGATCAAGATCTGCAGCTGACCAG 1124
|||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1057 GATTGGTGATTTCGGATTGGCGAATTTTTACCGAGGTGATGGAGATCTGCAGCTGACCAG 1116
Query 1125 TCGTGTTGTAACCTTATGGTACAGAGCACCTGAGCTGTTGCTCGGTGCCACTGAGTATGG 1184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TCGTGTTGTGACCTTATGGTACAGAGCACCTGAGCTGTTGCTCGGTGCCACTGAGTATGG 1176
Query 1185 ACCAGCCATAGACCTGTGGAGCGCCGGCTGCATTCTCACTGAGCTCTTCGCCGGAAAGCC 1244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1177 ACCAGCCATTGACCTGTGGAGCGCCGGCTGCATTCTCACTGAGCTCTTCGCCGGAAAACC 1236
Query 1245 TATTATGCCAGGACGTACAGAAGT 1268
||||||||||||||| ||||||||
Sbjct 1237 TATTATGCCAGGACGCACAGAAGT 1260
Score = 462 bits (250), Expect = 7e-129
Identities = 262/268 (98%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 601 CAGCAGCGTATACAAAGCTAGAGACCTTGAAACGGGAAAGATTGTGGCGATGAAGAAAGT 660
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 673 CAGCAGCGTGTACAAAGCTAGAGACCTTGAAACGGGGAAGATTGTGGCGATGAAGAAAGT 732
Query 661 TCGGTTTGTGAACATGGATCCAGAGAGTGTCCGGTTTATGGCCAGGGAGATTCTCATTCT 720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 733 TCGGTTTGTGAACATGGATCCAGAGAGTGTTCGGTTTATGGCCAGGGAGATTCTCATTCT 792
Query 721 TCGTAAGCTTGATCACCCCAATGTTATGAAGCTAGAAGGTCTAGTCACCTCTAGACTCTC 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 793 TCGTAAGCTTGATCACCCCAATGTTATGAAGCTAGAAGGTCTAGTTACCTCTAGACTCTC 852
Query 781 AGGTAGCCTCTACCTTGTCTTTGAGTACATGGAACATGATCTCGCAGGTCTAGCCGCAAC 840
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 853 AGGTAGCCTCTACCTTGTCTTTGAGTACATGGAACACGATCTCGCAGGTCTAGCTGCAAC 912
Query 841 TCCTGGAATCAAATTCTCTGAACCTCAG 868
||||||||||||||||||||||||||||
Sbjct 913 TCCTGGAATCAAATTCTCTGAACCTCAG 940
Score = 394 bits (213), Expect = 3e-108
Identities = 223/228 (98%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 1309 GTGGAGCAGATGCACAAGATCTTTAAGCTCTGTGGTTCACCCTCGGAAGATTACTGGAGA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTGGAGCAGATGCACAAGATCTTTAAGCTCTGTGGTTCACCCTCGGAAGATTACTGGAGA 1318
Query 1369 AGAGCAACACTGCCACTAGCAACAAGCTTTAAACCGAGTCATCCTTACAAGCCTGTTCTT 1428
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1319 AGAGCAACACTGCCACTAGCAACAAGCTTTAAACCCAGTCATCCTTACAAGCCTGTTCTT 1378
Query 1429 GCTGAAACCTTTAACCACTTCCCACCATCAGCTCTGATGCTCATCAATAAGCTACTGGCA 1488
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1379 GCTGAAACCTTTAACCATTTCCCTTCATCAGCTCTGATGCTCATCAATAAGCTACTGGCA 1438
Query 1489 ATAGAACCTGAAAAACGGGGATCCGCTGCTTCTACCTTGAGGAGCGAA 1536
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1439 ATAGAACCTGAAAAACGGGGATCGGCTGCTTCTACCTTGAGGAGCGAA 1486
Score = 172 bits (93), Expect = 1e-41
Identities = 138/157 (88%), Gaps = 13/157 (8%)
Strand=Plus/Plus
Query 6 TGGTACGCACGTTCCAGTTTTCTATGACAACAAACTCACAAAAACGTGAGAGAGACAACA 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGTACGCACGTTCCACTTTTCTATGACAACAAACTCACAAAAACGTGAGAGAGACAACA 60
Query 66 AAAA-TGAAAGATTTTGGTCGCCGACCATATCACC-AACACCAGAGTAGAGAGA-T-AGA 121
|||| |||||| ||||||||||||||||||||||| || || | |||||||||| | |||
Sbjct 61 AAAAATGAAAGTTTTTGGTCGCCGACCATATCACCTAAGAC-ATAGTAGAGAGAATGAGA 119
Query 122 -A-AGATA-A-AGAA--AA-TCGGCAAAA-CTTAAGT 150
| ||||| | | || || ||||||||| || ||||
Sbjct 120 GATAGATAGATAAAAGCAAATCGGCAAAAACTAAAGT 156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144681463612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5