BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476285 Length=1846 Score E Sequences producing significant alignments: (Bits) Value AT1G71680.1 | Symbols: | Transmembrane amino acid transporter ... 2503 0.0 > AT1G71680.1 | Symbols: | Transmembrane amino acid transporter family protein | chr1:26944587-26947188 FORWARD LENGTH=1888 Length=1888 Score = 2503 bits (1355), Expect = 0.0 Identities = 1628/1755 (93%), Gaps = 37/1755 (2%) Strand=Plus/Plus Query 1 CTCTATACATATTGTATTAAAAGAA-AAATACACTTTCCTGTAtttttaatttttttttG 59 ||||||||||||||||| |||| || ||||||| ||||||||| |||| | ||||||||| Sbjct 1 CTCTATACATATTGTATCAAAA-AATAAATACATTTTCCTGTA-TTTT-A-TTTTTTTTG 56 Query 60 TGAGTATTAAAGAAAACACAAGACAAGAATGACATACCCAGCGGATGATGAGGAGAACAA 119 ||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| Sbjct 57 TGAGTATTAAAGAAAACACAAGACAAGAATGACATACACAGCGAATGACGAGGAGAACAA 116 Query 120 AGGAAGATCAACAGACAATAACAATCACCGTCAAATGGATTACAACGATTGGTTACCAGT 179 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 AGGAAGATCAACGGACAATAACAATCACCGTCAAATGGATTACAACGATTGGTTACCAGT 176 Query 180 CACAGCGTCTAGAGAGGCCAAATGGTATTACTCCGCCTTCCATAATGTCACGGCCATGGT 239 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 177 CACAGCGTCTAGAGAAGCCAAATGGTATTACTCCGCCTTCCACAATGTCACGGCCATGGT 236 Query 240 TGGTGCCGGAGTTCTTGGTCTCCCTTTCGCAATGTCACAACTTGGCTGGGGACCTGGACT 299 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 237 TGGCGCCGGAGTTCTTGGTCTCCCTTTCGCCATGTCACAACTTGGCTGGGGACCTGGACT 296 Query 300 TGTTGCGATAATAATGTCATGGGCTATAACGTTCTACTCGTTATGGCAAATGGTGGAGTT 359 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 297 TGTTGCTATAATAATGTCATGGGCTATAACGTTCTACTCGTTATGGCAAATGGTACAGTT 356 Query 360 GCATGAAGCCGTTCCCGGGAAACGGTTGGACCGTTACCCCGAGCTAGGCCAAGAAGCGTT 419 ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || Sbjct 357 GCACGAAGCCGTTCCAGGGAAACGGTTGGACCGTTACCCCGAGCTAGGGCAAGAAGCTTT 416 Query 420 CGGACCAAAACTAGGTTACTGGATCGTCATGCCGCAACAGCTTATGGTCCAAATCGCTTC 479 |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 417 TGGACCAAAACTAGGTTACTGGATCGTCATGCCGCAACAGCTTCTTGTCCAAATCGCTTC 476 Query 480 CGACATAGTCTACAACGTGACAGGAGGCAAATCGCTTAAGAAATTCGTCGAGCTTCTCTT 539 ||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| || Sbjct 477 CGACATAGTCTACAACGTGACAGGAGGAAAATCTCTCAAGAAATTTGTCGAGCTTCTATT 536 Query 540 TCCGAATCTCGAACATATCCGTCAGACTTATTACATCCTCGGGTTCGCGGCGCTCCAGCT 599 ||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| Sbjct 537 TCCGAATCTCGAACATATCCGTCAGACTTATTACATCCTTGGATTCGCCGCGCTTCAGCT 596 Query 600 TGTCCTCTCTCAGTCTCCTGATTTCAACTCGATCAAAATCGTCTCTCTCCTCGCCGCCCT 659 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 597 TGTCCTCTCTCAATCTCCTGATTTCAACTCCATCAAGATCGTCTCTCTCCTCGCCGCCCT 656 Query 660 CATGTCTTTCCTTTACTCAATGATAGCTTCCGTAGCGTCAATAGCGAAAGGAACGCATCA 719 |||||||||||||||||||||||||||||| || ||||||||||| ||||||||| | || Sbjct 657 CATGTCTTTCCTTTACTCAATGATAGCTTCGGTGGCGTCAATAGCAAAAGGAACGGAACA 716 Query 720 CCGTCCTTCAACTTATGGAGTCAGGGGAGACACAGTGGCCTCAATGGTCTTTGATGCATT 779 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 717 CCGTCCTTCAACTTACGGAGTCAGGGGAGACACGGTGGCCTCAATGGTCTTTGATGCATT 776 Query 780 TAACGGCATTGGAACCATAGCGTTTGCGTTTGCAGGACATAGTGTGGTTCTTGAGATCCA 839 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 777 TAACGGCATTGGAACCATAGCGTTTGCGTTTGCAGGACACAGTGTGGTTCTTGAGATCCA 836 Query 840 AGCTACTATTCCTTCAACACCTGAAGTTCCTTCCAAGAAACCGATGTGGAAAGGAGTTGT 899 ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 837 AGCAACTATTCCTTCAACACCTGAAGTGCCTTCCAAGAAACCAATGTGGAAAGGAGTTGT 896 Query 900 CGTAGCTTACCTAATCGTCATCGTTTGTTACCTTTTTGTGGCTATCTCCGGTTTTTGGGC 959 ||||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||| Sbjct 897 TGTAGCTTACATAATCGTCATCATTTGTTACCTTTTTGTGGCTATCTCCGGCTATTGGGC 956 Query 960 TTTTGGTGATCTTGTTGAGGATGATGTTCTCATTTCCTTAGAGAGACCAGCTTGGCTTAT 1019 ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 GTTTGGGGCTCATGTTGAGGATGATGTTCTCATTTCCTTAGAGAGACCAGCTTGGCTTAT 1016 Query 1020 AGCTGCTGCTAATTTCATGGTTTTTATCCATGTCATTGGAAGTTATCAGGTTTTTGCGAT 1079 ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1017 AGCGGCTGCTAACTTCATGGTTTTTATCCATGTCATAGGAAGTTATCAGGTTTTTGCGAT 1076 Query 1080 GATCGTTTTTGACACAATCGAGTCGTATCTTGTGAAAACACTAAAATTCGCTCCTTCAAC 1139 ||| || |||||||| |||||||| ||||||||||||||||| |||||| |||||||||| Sbjct 1077 GATTGTGTTTGACACGATCGAGTCTTATCTTGTGAAAACACTGAAATTCACTCCTTCAAC 1136 Query 1140 AACACTGCGTCTAGTCGCACGTAGTACATATGTTGCATTGATATGTCTTGTAGCAGTTTG 1199 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1137 AACACTGCGTCTAGTCGCACGTAGTACATATGTTGCATTGATTTGTCTTGTAGCAGTTTG 1196 Query 1200 TATCCCCTTTTTCGGAGGTCTTTTAGGGTTCTTCGGCGGTCTTGTCTTCTCATCAACCTC 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 TATCCCCTTTTTCGGAGGTCTTTTAGGGTTCTTCGGCGGTCTTGTCTTCTCATCAACCTC 1256 Query 1260 GTACTTCTTGCCTTGCATTATATGGATGATCATGAAGCGACCAAAAAGATATAGCGTCCA 1319 ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||| Sbjct 1257 GTACTTCTTGCCTTGCATTATATGGTTGATAATGAAGCGACCAAAAAGATTTAGCGCCCA 1316 Query 1320 TTGGTGGTGTTCTTTCTTAATTCAAATAGCAATAGTCACTGGAATCTTGATAGCAATTCT 1379 |||||||||||||| || |||||||||||||| |||| |||||| ||||| Sbjct 1317 TTGGTGGTGTTCTTGGGTA---------GCAATAGTCACTGGTATCTCGATAGCGATTCT 1367 Query 1380 TGCGCCCATTGGAGGAATGAGACACATTATTCTTTCAGCAAGAACTTACAAGCTCTTCTC 1439 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1368 TGCGCCCATTGGAGGAATGAGACACATTATTCTTTCAGCAAGAACCTACAAGCTCTTCTC 1427 Query 1440 ATAGGCTTTAAATAAAAAGCCTTGCAACCAAACAATATCACAACAAACTTATAAAAGTTT 1499 |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 1428 ATAGGCTTCAAATAAAAAGCCTTGCAACCAAACA-T--CACAACAAACTTATAAAAGTTT 1484 Query 1500 TTAAC-TT----AA---A--TTAGCCGTCTAGTTGGAGAATATATATAGTTAGTTATTCG 1549 || || || || | |||||| ||||||||| ||||||||| ||||||||||| | Sbjct 1485 TTTACCTTTTTTAACTTAAGTTAGCCTTCTAGTTGGGGAATATATAAAGTTAGTTATTTG 1544 Query 1550 ATTATTTGGCTTCTCGTTTTCTTTTTATAACCCGTTCATCAAGAACTGCCTTCCGAATTG 1609 ||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| |||||| Sbjct 1545 ATTATTTGGATTCTCCTTT-CTTTTTATAACCCTTTCATCAAGAACTGCCTTCGGAATTG 1603 Query 1610 CTGTGAAGGCTTTACGCGCTTGGCCTT-AGGCTGCGACTGATGATGTTCTCTCAAACACT 1668 ||| ||||||||||||||||||| || |||||| ||| ||||||||||||||||| ||| Sbjct 1604 TTGTTAAGGCTTTACGCGCTTGGC-TTGAGGCTGTGACGGATGATGTTCTCTCAAAAACT 1662 Query 1669 TCATGTA-AAATCACCTAAAAAGGAATACCATACAATATGTGGTCAACCTCAGGCTCTAA 1727 ||||| | ||| | ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1663 TCATG-ACAAA--A---AAAAAGGAATACCATACAATATGTGGTCAACCTCAGGCTCTGA 1716 Query 1728 ACTTGCAGGTTTTTT 1742 |||| |||||||||| Sbjct 1717 ACTTTCAGGTTTTTT 1731 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91364991900 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5