BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476285
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71680.1 | Symbols: | Transmembrane amino acid transporter ... 2503 0.0
> AT1G71680.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:26944587-26947188 FORWARD LENGTH=1888
Length=1888
Score = 2503 bits (1355), Expect = 0.0
Identities = 1628/1755 (93%), Gaps = 37/1755 (2%)
Strand=Plus/Plus
Query 1 CTCTATACATATTGTATTAAAAGAA-AAATACACTTTCCTGTAtttttaatttttttttG 59
||||||||||||||||| |||| || ||||||| ||||||||| |||| | |||||||||
Sbjct 1 CTCTATACATATTGTATCAAAA-AATAAATACATTTTCCTGTA-TTTT-A-TTTTTTTTG 56
Query 60 TGAGTATTAAAGAAAACACAAGACAAGAATGACATACCCAGCGGATGATGAGGAGAACAA 119
||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 57 TGAGTATTAAAGAAAACACAAGACAAGAATGACATACACAGCGAATGACGAGGAGAACAA 116
Query 120 AGGAAGATCAACAGACAATAACAATCACCGTCAAATGGATTACAACGATTGGTTACCAGT 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGGAAGATCAACGGACAATAACAATCACCGTCAAATGGATTACAACGATTGGTTACCAGT 176
Query 180 CACAGCGTCTAGAGAGGCCAAATGGTATTACTCCGCCTTCCATAATGTCACGGCCATGGT 239
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 177 CACAGCGTCTAGAGAAGCCAAATGGTATTACTCCGCCTTCCACAATGTCACGGCCATGGT 236
Query 240 TGGTGCCGGAGTTCTTGGTCTCCCTTTCGCAATGTCACAACTTGGCTGGGGACCTGGACT 299
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 237 TGGCGCCGGAGTTCTTGGTCTCCCTTTCGCCATGTCACAACTTGGCTGGGGACCTGGACT 296
Query 300 TGTTGCGATAATAATGTCATGGGCTATAACGTTCTACTCGTTATGGCAAATGGTGGAGTT 359
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 297 TGTTGCTATAATAATGTCATGGGCTATAACGTTCTACTCGTTATGGCAAATGGTACAGTT 356
Query 360 GCATGAAGCCGTTCCCGGGAAACGGTTGGACCGTTACCCCGAGCTAGGCCAAGAAGCGTT 419
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 357 GCACGAAGCCGTTCCAGGGAAACGGTTGGACCGTTACCCCGAGCTAGGGCAAGAAGCTTT 416
Query 420 CGGACCAAAACTAGGTTACTGGATCGTCATGCCGCAACAGCTTATGGTCCAAATCGCTTC 479
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 417 TGGACCAAAACTAGGTTACTGGATCGTCATGCCGCAACAGCTTCTTGTCCAAATCGCTTC 476
Query 480 CGACATAGTCTACAACGTGACAGGAGGCAAATCGCTTAAGAAATTCGTCGAGCTTCTCTT 539
||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||
Sbjct 477 CGACATAGTCTACAACGTGACAGGAGGAAAATCTCTCAAGAAATTTGTCGAGCTTCTATT 536
Query 540 TCCGAATCTCGAACATATCCGTCAGACTTATTACATCCTCGGGTTCGCGGCGCTCCAGCT 599
||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 537 TCCGAATCTCGAACATATCCGTCAGACTTATTACATCCTTGGATTCGCCGCGCTTCAGCT 596
Query 600 TGTCCTCTCTCAGTCTCCTGATTTCAACTCGATCAAAATCGTCTCTCTCCTCGCCGCCCT 659
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 597 TGTCCTCTCTCAATCTCCTGATTTCAACTCCATCAAGATCGTCTCTCTCCTCGCCGCCCT 656
Query 660 CATGTCTTTCCTTTACTCAATGATAGCTTCCGTAGCGTCAATAGCGAAAGGAACGCATCA 719
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||| | ||
Sbjct 657 CATGTCTTTCCTTTACTCAATGATAGCTTCGGTGGCGTCAATAGCAAAAGGAACGGAACA 716
Query 720 CCGTCCTTCAACTTATGGAGTCAGGGGAGACACAGTGGCCTCAATGGTCTTTGATGCATT 779
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 CCGTCCTTCAACTTACGGAGTCAGGGGAGACACGGTGGCCTCAATGGTCTTTGATGCATT 776
Query 780 TAACGGCATTGGAACCATAGCGTTTGCGTTTGCAGGACATAGTGTGGTTCTTGAGATCCA 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 TAACGGCATTGGAACCATAGCGTTTGCGTTTGCAGGACACAGTGTGGTTCTTGAGATCCA 836
Query 840 AGCTACTATTCCTTCAACACCTGAAGTTCCTTCCAAGAAACCGATGTGGAAAGGAGTTGT 899
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 837 AGCAACTATTCCTTCAACACCTGAAGTGCCTTCCAAGAAACCAATGTGGAAAGGAGTTGT 896
Query 900 CGTAGCTTACCTAATCGTCATCGTTTGTTACCTTTTTGTGGCTATCTCCGGTTTTTGGGC 959
||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 897 TGTAGCTTACATAATCGTCATCATTTGTTACCTTTTTGTGGCTATCTCCGGCTATTGGGC 956
Query 960 TTTTGGTGATCTTGTTGAGGATGATGTTCTCATTTCCTTAGAGAGACCAGCTTGGCTTAT 1019
||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GTTTGGGGCTCATGTTGAGGATGATGTTCTCATTTCCTTAGAGAGACCAGCTTGGCTTAT 1016
Query 1020 AGCTGCTGCTAATTTCATGGTTTTTATCCATGTCATTGGAAGTTATCAGGTTTTTGCGAT 1079
||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 AGCGGCTGCTAACTTCATGGTTTTTATCCATGTCATAGGAAGTTATCAGGTTTTTGCGAT 1076
Query 1080 GATCGTTTTTGACACAATCGAGTCGTATCTTGTGAAAACACTAAAATTCGCTCCTTCAAC 1139
||| || |||||||| |||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 1077 GATTGTGTTTGACACGATCGAGTCTTATCTTGTGAAAACACTGAAATTCACTCCTTCAAC 1136
Query 1140 AACACTGCGTCTAGTCGCACGTAGTACATATGTTGCATTGATATGTCTTGTAGCAGTTTG 1199
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1137 AACACTGCGTCTAGTCGCACGTAGTACATATGTTGCATTGATTTGTCTTGTAGCAGTTTG 1196
Query 1200 TATCCCCTTTTTCGGAGGTCTTTTAGGGTTCTTCGGCGGTCTTGTCTTCTCATCAACCTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TATCCCCTTTTTCGGAGGTCTTTTAGGGTTCTTCGGCGGTCTTGTCTTCTCATCAACCTC 1256
Query 1260 GTACTTCTTGCCTTGCATTATATGGATGATCATGAAGCGACCAAAAAGATATAGCGTCCA 1319
||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||
Sbjct 1257 GTACTTCTTGCCTTGCATTATATGGTTGATAATGAAGCGACCAAAAAGATTTAGCGCCCA 1316
Query 1320 TTGGTGGTGTTCTTTCTTAATTCAAATAGCAATAGTCACTGGAATCTTGATAGCAATTCT 1379
|||||||||||||| || |||||||||||||| |||| |||||| |||||
Sbjct 1317 TTGGTGGTGTTCTTGGGTA---------GCAATAGTCACTGGTATCTCGATAGCGATTCT 1367
Query 1380 TGCGCCCATTGGAGGAATGAGACACATTATTCTTTCAGCAAGAACTTACAAGCTCTTCTC 1439
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1368 TGCGCCCATTGGAGGAATGAGACACATTATTCTTTCAGCAAGAACCTACAAGCTCTTCTC 1427
Query 1440 ATAGGCTTTAAATAAAAAGCCTTGCAACCAAACAATATCACAACAAACTTATAAAAGTTT 1499
|||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1428 ATAGGCTTCAAATAAAAAGCCTTGCAACCAAACA-T--CACAACAAACTTATAAAAGTTT 1484
Query 1500 TTAAC-TT----AA---A--TTAGCCGTCTAGTTGGAGAATATATATAGTTAGTTATTCG 1549
|| || || || | |||||| ||||||||| ||||||||| ||||||||||| |
Sbjct 1485 TTTACCTTTTTTAACTTAAGTTAGCCTTCTAGTTGGGGAATATATAAAGTTAGTTATTTG 1544
Query 1550 ATTATTTGGCTTCTCGTTTTCTTTTTATAACCCGTTCATCAAGAACTGCCTTCCGAATTG 1609
||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1545 ATTATTTGGATTCTCCTTT-CTTTTTATAACCCTTTCATCAAGAACTGCCTTCGGAATTG 1603
Query 1610 CTGTGAAGGCTTTACGCGCTTGGCCTT-AGGCTGCGACTGATGATGTTCTCTCAAACACT 1668
||| ||||||||||||||||||| || |||||| ||| ||||||||||||||||| |||
Sbjct 1604 TTGTTAAGGCTTTACGCGCTTGGC-TTGAGGCTGTGACGGATGATGTTCTCTCAAAAACT 1662
Query 1669 TCATGTA-AAATCACCTAAAAAGGAATACCATACAATATGTGGTCAACCTCAGGCTCTAA 1727
||||| | ||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1663 TCATG-ACAAA--A---AAAAAGGAATACCATACAATATGTGGTCAACCTCAGGCTCTGA 1716
Query 1728 ACTTGCAGGTTTTTT 1742
|||| ||||||||||
Sbjct 1717 ACTTTCAGGTTTTTT 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91364991900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5