BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476288
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71691.2 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 2021 0.0
> AT1G71691.2 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:26949199-26951547 REVERSE LENGTH=1418
Length=1418
Score = 2021 bits (1094), Expect = 0.0
Identities = 1236/1305 (95%), Gaps = 8/1305 (1%)
Strand=Plus/Plus
Query 1 ACTTCACAATGGCTTTCCACTTCCCGAGACTTTACTTCTTCTCAGCTCTTCTCGTGGTGG 60
|||||| ||||||||||||||||| | |||||| |||||||||||||||||| | ||||
Sbjct 60 ACTTCATAATGGCTTTCCACTTCCGGCGACTTTGCTTCTTCTCAGCTCTTCTTGCCGTGG 119
Query 61 TTCTTCATCTCGTTCATGGTGTCTCCGGCCAACTAGTTGAGGTTGAAGAACCTATTTCTG 120
|||| || ||| ||||||| ||||| ||||||||||||| |||||| |||||||||||||
Sbjct 120 TTCTCCAACTCCTTCATGGCGTCTCTGGCCAACTAGTTGTGGTTGAGGAACCTATTTCTG 179
Query 121 CTCCTCCGCCTCCATTGGTCGACCTAAACAGCGGTGATGGCATTGTGCCGGCGCTGTTTG 180
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CTCCTCCGCCTCCGCTGGTCGACCTAAACACCGGTGATGGCATTGTGCCGGCGCTGTTTG 239
Query 181 TCTTCGGTGACTCTCTGATAGACAATGGGAATAACAATAACATTCCTTCCTTTGCCAAAG 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTCGGTGACTCTCTAATAGACAATGGGAATAACAATAACATTCCTTCCTTTGCCAAAG 299
Query 241 CCAATTATTTCCCTTATGGTATAGATTTCAATGGCGGTCCGACCGGTCGGTTCTGCAATG 300
|||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 300 CCAATTATTTTCCTTATGGCATTGATTTCAATGGCGGTCCGACCGGTCGATTCTGCAATG 359
Query 301 GCTTAACCATGGTCGATGGGATTGCTCAACTATTGGGGCTGCCACTGATTCCGGCGTACT 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 GCTTAACGATGGTCGATGGGATTGCTCAACTATTGGGGCTGCCACTGATTCCGGCCTACT 419
Query 361 CGGAAGCTACCGGAGATCAAGTACTTCGTGGTGTCAACTATGCTTCCGCAGCCGCCGGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 CGGAAGCTACCGGAGATCAAGTACTTCGTGGTGTCAACTATGCTTCCGCAGCCGCGGGGA 479
Query 421 TTCTTCCTGACACCGGAGGAAACTTTGTGGGACGCATACCTTTCGACCAACAGATTCATA 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TTCTTCCTGACACCGGAGGAAACTTTGTGGGACGCATACCTTTCGACCAGCAGATTCATA 539
Query 481 ACTTCGAGACAACGTTAGATCAGGTGGCTAGCAAGTCCGGTGGTGCAGTGGCCATTGCAG 540
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 540 ACTTCGAGACAACACTAGATCAGGTGGCGAGCAAGTCCGGTGGTGCAGTGGCCATTGCGG 599
Query 541 ATTCGGTGACTCGAAGCTTGTTCTTCATCGGAATGGGAAGCAACGACTATCTCAACAATT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTCGGTGACTCGAAGCTTGTTCTTCATCGGAATGGGAAGCAACGACTATCTCAACAATT 659
Query 601 ACTTGATGCCCAATTTCCCTACCCGTAACCAATACAACTCCCAACAATTCGGCGATCTCT 660
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 660 ACTTGATGCCCAATTTCCCTACCCGTAACCAATACAACTCCCAACAGTTCGGTGATCTCT 719
Query 661 TAGTTCAACATTACACCAATCAGCTCACCAGACTCTATAATCTCGGTGGTCGGAAATTTG 720
| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 720 TGGTTCAACATTACACCGATCAGCTCACCAGACTATATAATCTTGGTGGTCGGAAATTTG 779
Query 721 TAGTGGCCGGACTTGGAAGAATGGGATGCATTCCTAGTATTTTAGCTCAAGGAAACGACG 780
||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||
Sbjct 780 TAGTGGCCGGACTTGGAAGAATGGGGTGCATTCCCAGCATTCTAGCTCAAGGAAACGACG 839
Query 781 GTAAATGCTCTGAAGAAGTTAACCAACTTGTTCTTCCTTTCAACACAAACGTAAAAACAA 840
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 840 GTAAATGCTCGGAAGAAGTGAACCAACTTGTTCTTCCTTTCAACACAAACGTTAAAACAA 899
Query 841 TGATCTCTAATCTCAACCAGAATCTCCCGGCTGCTAAATTTATTTACCTCGACATCGCTC 900
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 TGATCTCTAATCTCAACCAGAATCTCCCGGATGCTAAATTTATTTACCTCGACATCGCTC 959
Query 901 ATATGTTCGAAGACATCGTTGCGAACCAAGCAGCTTATGGGCTTACTACTATGGACAAAG 960
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 960 ATATGTTCGAAGACATCGTTGCTAACCAAGCAGCTTATGGTCTTACTACTATGGACAAAG 1019
Query 961 GATGTTGCGGGATAGGAAAGAACAGAGGACAGATCACTTGTCTTCCCTTTGAAACGCCTT 1020
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GATGTTGTGGAATAGGAAAAAACAGAGGACAGATCACTTGTCTTCCCTTTGAAACGCCTT 1079
Query 1021 GTCCTAACAGAGACCAGTATGTGTTTTGGGACGCGTTTC-ATCCTACCGAGAAAGTTAAT 1079
||||||||||||| ||||||||||||||||| || |||| ||||||| ||||||||||||
Sbjct 1080 GTCCTAACAGAGATCAGTATGTGTTTTGGGATGC-TTTCCATCCTACAGAGAAAGTTAAT 1138
Query 1080 CTCATAATGGCAAAGAAAGCGTTTGCTGGTGACCGCACTGTCGCGTATCCAATCAACATT 1139
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1139 CTCATAATGGCAAAGAAAGCGTTTGCTGGTGACCGCACTGTCGCGTACCCGATCAACATT 1198
Query 1140 CAGGAATTGGCTAGTCTCAATTAACGATTATGAAAGACTATCAACTAGAAATTAAAAAAC 1199
||| |||||||||||||||||||||||||||||| |||||||||| ||| || ||||| |
Sbjct 1199 CAGCAATTGGCTAGTCTCAATTAACGATTATGAA-GACTATCAACAAGACAT-AAAAA-C 1255
Query 1200 TTGGTGTTGTCTTTGTAGTTTCTGTTT-GTAAGATTTTGAGTCAAATCTGTTTTCCTTTT 1258
||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 1256 TTGGTGTTGTCTTTGTAGTTTCTTTTTTGTAAGGTTTTGAGTCAAATCTGTTTTCCTTTT 1315
Query 1259 GAGACGTTTTGAAAACGTCTACTGTGTCAC-CA-AACGGTCCAAA 1301
||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1316 AAGACGTTTTGAAAACGTCTACTGTGTCACACTTAACGGTCCAAA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5