BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476289
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71692.1 | Symbols: AGL12, XAL1 | AGAMOUS-like 12 | chr1:269... 1485 0.0
> AT1G71692.1 | Symbols: AGL12, XAL1 | AGAMOUS-like 12 | chr1:26952645-26955127
REVERSE LENGTH=1082
Length=1082
Score = 1485 bits (804), Expect = 0.0
Identities = 868/898 (97%), Gaps = 7/898 (1%)
Strand=Plus/Plus
Query 1 AGAGATGGCTCGTGGAAAGATTCAGCTCAAGAGGATTGAGAACCCGGTTCACAGACAAGT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 185 AGAGATGGCTCGTGGAAAGATTCAGCTTAAGAGGATTGAGAACCCGGTTCACAGACAAGT 244
Query 61 GACTTTTTGCAAGAGGAGAACTGGTCTTCTCAAGAAGGCTAAGGAGCTCTCTGTGCTCTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GACTTTTTGCAAGAGGAGAACTGGTCTTCTCAAGAAGGCTAAGGAGCTCTCTGTGCTCTG 304
Query 121 TGACGCCGAGATCGGTGTTGTGATCTTCTCTCCACAGGGCAAGCTCTTTGAGCTCGCTAC 180
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 305 TGATGCCGAGATCGGTGTTGTGATCTTCTCTCCTCAGGGCAAGCTCTTTGAGCTCGCTAC 364
Query 181 TAAAGGAACAATGGAGGGAATGATTGATAAGTACATGAAGTGTACTGGTGGTGGTCGTGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TAAAGGAACAATGGAGGGAATGATTGATAAGTACATGAAGTGTACTGGTGGTGGTCGTGG 424
Query 241 TTCTTCTTCTGCTACTTTTACTGCTCAAGAACAACTTCAACCACCAAATCTTAATCCGAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 425 TTCTTCTTCTGCTACTTTTACTGCTCAAGAACAACTTCAACCACCAAATCTTGATCCGAA 484
Query 301 GGATGAGATCAACGTGCTTAAGCAAGAGATTGAGATGCTTCAGAAAGGGATAAGCTATAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AGATGAGATCAACGTGCTTAAGCAAGAGATTGAGATGCTTCAGAAAGGGATAAGCTATAT 544
Query 361 GTTTGGAGGAGGAGATGGGGCGATGAATCTTGAAGAACTTCTTTTGCTTGAGAAGCATCT 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 545 GTTTGGAGGAGGAGATGGGGCTATGAATCTTGAAGAACTTCTTTTGCTTGAGAAGCATCT 604
Query 421 TGAGTATTGGATTTCTCAGATTCGCTCTGCTAAGATGGATCTTATGCTTCAAGAAATTCA 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 605 TGAGTATTGGATTTCTCAGATTCGCTCTGCTAAGATGGATGTTATGCTTCAAGAAATTCA 664
Query 481 GTCATTGAGGAACAAGGAAGGAGTCCTCAAAAACACCAACAAGTATCTCCTCGAAAAGAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GTCATTGAGGAACAAGGAAGGAGTCCTCAAAAACACCAACAAGTATCTCCTCGAAAAGAT 724
Query 541 AGAGGAAAACAACAATAGCATATTAGATGCTAACTTTGCAACAGTCATGGAGACTAACTA 600
|||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 725 AGAGGAAAACAACAATAGCATATTAGATGCTAACTTCGCA---GTCATGGAGACAAACTA 781
Query 601 TTCCTATCCGCTAACCATGCCAAGTGAAATATTTCAGTTCTAGACCATAGGGTATTTAAA 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 782 TTCCTATCCGCTAACAATGCCAAGTGAAATATTTCAGTTCTAGACCATAGGGTATTTGAA 841
Query 661 GACTATGTCTCACGAATTTAAATAACCTTGGTAAGTATAATATAGTGTTGTTAAATCACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GACTATGTCTCACGAATTTAAATAACCTTGGTAAGTATAATATAGTGTTGTTAAATCACA 901
Query 721 CATAATTAAAATAAAGCCTGTGGAACTTTGCTAGGCAGTTGAAATTCTATCTGTATGttt 780
|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 902 CATAATTAAAATAAAGCCTGTGGAACTTCGCTAGGCAGTTGAAAATCTATCCGTATGTTT 961
Query 781 tttttCCTCTTGTTTTTCATTTGTTGGTGTGAACATGAAATGAGTACAAGTGTGGTGTGT 840
| | ||||||||||| |||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 962 TAT--CCTCTTGTTTTACATTTGTTGGTGTGAAGATGAAATGACTGCAAGTGTGGTGTGT 1019
Query 841 ACTTA-AAGCTCTTTCTGGTTTATATCTATGGTTTGAATTTATGGATTATTTGGTTTT 897
||||| || |||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 1020 ACTTATAA-CTCTTTCTACTTTCTATCTATGTTTTGAATTTATGGATTATTTGGTTTT 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5