BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476296
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71730.1 | Symbols: | unknown protein; Has 52 Blast hits to... 745 0.0
> AT1G71730.1 | Symbols: | unknown protein; Has 52 Blast hits
to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa
- 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes
- 7 (source: NCBI BLink). | chr1:26986060-26986909 REVERSE
LENGTH=850
Length=850
Score = 745 bits (403), Expect = 0.0
Identities = 674/793 (85%), Gaps = 65/793 (8%)
Strand=Plus/Plus
Query 1 ATGCGTCTTCACTCAGCAATTACTCTCCGAAATTTGTTCACCAGAAAGTCTCTCCGAATC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 79 ATGCGTCTTCACTCAGCAATTACTCTCCGAAATCTGTTCACCAGAAAGTCTCTCCGAATC 138
Query 61 CGACAGATTCCAAGCATTACATCTTCTACGATTCTCATAAACTCGATTAGCA-ATGTCTC 119
| ||||| || ||||||||| |||| || | | || | |||| | | |||||||
Sbjct 139 CCACAGAATCTAAGCATTACCGCTTCCCCG--T-T-AT----T-GATT-GGAGATGTCTC 188
Query 120 TGGT--AAT-----C-TC-GGATC-TC-CA-TATTCGAAATCCAGTCTCTCCGAA----- 162
||| ||| | || | | || || ||||||||||| |||||||| |||
Sbjct 189 CGGTCAAATCAAACCTTCATCAACGTCTCACTATTCGAAATCTAGTCTCTCAGAAGCGTC 248
Query 163 A-CATCATCAGCTAGCTCACTAACCTCCCGGATCCC--A-AACG---C---CTTCCAGGA 212
| |||||||| |||||||||||| | || |||||| | |||| | ||||| |||
Sbjct 249 ATCATCATCATCTAGCTCACTAATTTTCCAGATCCCAAACAACGCTTCATTCTTCCTGGA 308
Query 213 GAATCAGAGAAGATACGGCACCGACTCTAGCAGCGGCTCACCTG-TAGATGTAAACAAGG 271
|||||||| |||||| |||||| ||| |||||||| ||||| | ||||||||||||||
Sbjct 309 AAATCAGAGGAGATACAGCACCGGCTCCAGCAGCGGTTCACC-GCCAGATGTAAACAAGG 367
Query 272 TAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGG 427
Query 332 ATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCAGAGTGCGCTAGAGCCGCCGTGGCAG 391
|||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 428 ATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCGGAGTGCGCGAGAGACGCCGTGGCAG 487
Query 392 AGGTTTTGGAGATGTT-CGAAGGTTTGCTTGGGAAAGTAACAGAGAAAGAGAAAGCGTCT 450
|||||||||||||||| | |||||||||| ||||||||||||||||| |||||||| |||
Sbjct 488 AGGTTTTGGAGATGTTTC-AAGGTTTGCTCGGGAAAGTAACAGAGAAGGAGAAAGCTTCT 546
Query 451 CTGCAGCGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTCAACAGCTGAAC 510
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 547 CTGCAACGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTGAACAGCTGAAC 606
Query 511 GAATGATCGATCAATTGATCATTTTTGATTCTGTGGAGAAACGAAGAGGTTAGCAGAAAT 570
||||||||||| | | | ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 607 GAATGATCGAT---T-GCTGATTTT-GATTCCGTGGAGAAACGAAGAGGTTAGCAGAAAT 661
Query 571 TTTCCTCTTCTTCACTGAGCCATTGTTCTTAGCTGATTATCATCTGTGTGTGC-TTCAAT 629
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 662 TTTCCTCTTCTTCACCGAGCCATTGTTGTTAGCTGATTATCATCTGTGTGTGCCTT-AAT 720
Query 630 AAATTT--T--AT---G-TCAAATTCAAAACAATTGCAATGCTTAAGCCTTGTGACTACA 681
|||| | | || | ||||||||| | || ||||||||||| | |||||||| |
Sbjct 721 AAATCTACTCCATTTAGGTCAAATTCAGAGCATTTGCAATGCTTGTGAGTTGTGACTGTA 780
Query 682 CACTCTTTTGATTAGAGGaaaa-aaa-CTTGAAAC-GATTTATTAT--GTTACTATTTCA 736
| ||||||||||| ||||||| ||| |||||||| | |||||||| ||| ||||| ||
Sbjct 781 C--TCTTTTGATTACAGGAAAAGAAAACTTGAAACAG-TTTATTATAAGTTTCTATTGCA 837
Query 737 GTGAGCTTCGTTG 749
|||||||||||||
Sbjct 838 GTGAGCTTCGTTG 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369522428
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5