BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476296 Length=749 Score E Sequences producing significant alignments: (Bits) Value AT1G71730.1 | Symbols: | unknown protein; Has 52 Blast hits to... 745 0.0 > AT1G71730.1 | Symbols: | unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:26986060-26986909 REVERSE LENGTH=850 Length=850 Score = 745 bits (403), Expect = 0.0 Identities = 674/793 (85%), Gaps = 65/793 (8%) Strand=Plus/Plus Query 1 ATGCGTCTTCACTCAGCAATTACTCTCCGAAATTTGTTCACCAGAAAGTCTCTCCGAATC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 79 ATGCGTCTTCACTCAGCAATTACTCTCCGAAATCTGTTCACCAGAAAGTCTCTCCGAATC 138 Query 61 CGACAGATTCCAAGCATTACATCTTCTACGATTCTCATAAACTCGATTAGCA-ATGTCTC 119 | ||||| || ||||||||| |||| || | | || | |||| | | ||||||| Sbjct 139 CCACAGAATCTAAGCATTACCGCTTCCCCG--T-T-AT----T-GATT-GGAGATGTCTC 188 Query 120 TGGT--AAT-----C-TC-GGATC-TC-CA-TATTCGAAATCCAGTCTCTCCGAA----- 162 ||| ||| | || | | || || ||||||||||| |||||||| ||| Sbjct 189 CGGTCAAATCAAACCTTCATCAACGTCTCACTATTCGAAATCTAGTCTCTCAGAAGCGTC 248 Query 163 A-CATCATCAGCTAGCTCACTAACCTCCCGGATCCC--A-AACG---C---CTTCCAGGA 212 | |||||||| |||||||||||| | || |||||| | |||| | ||||| ||| Sbjct 249 ATCATCATCATCTAGCTCACTAATTTTCCAGATCCCAAACAACGCTTCATTCTTCCTGGA 308 Query 213 GAATCAGAGAAGATACGGCACCGACTCTAGCAGCGGCTCACCTG-TAGATGTAAACAAGG 271 |||||||| |||||| |||||| ||| |||||||| ||||| | |||||||||||||| Sbjct 309 AAATCAGAGGAGATACAGCACCGGCTCCAGCAGCGGTTCACC-GCCAGATGTAAACAAGG 367 Query 272 TAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGG 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 TAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGG 427 Query 332 ATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCAGAGTGCGCTAGAGCCGCCGTGGCAG 391 |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| Sbjct 428 ATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCGGAGTGCGCGAGAGACGCCGTGGCAG 487 Query 392 AGGTTTTGGAGATGTT-CGAAGGTTTGCTTGGGAAAGTAACAGAGAAAGAGAAAGCGTCT 450 |||||||||||||||| | |||||||||| ||||||||||||||||| |||||||| ||| Sbjct 488 AGGTTTTGGAGATGTTTC-AAGGTTTGCTCGGGAAAGTAACAGAGAAGGAGAAAGCTTCT 546 Query 451 CTGCAGCGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTCAACAGCTGAAC 510 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 547 CTGCAACGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTGAACAGCTGAAC 606 Query 511 GAATGATCGATCAATTGATCATTTTTGATTCTGTGGAGAAACGAAGAGGTTAGCAGAAAT 570 ||||||||||| | | | ||||| ||||| |||||||||||||||||||||||||||| Sbjct 607 GAATGATCGAT---T-GCTGATTTT-GATTCCGTGGAGAAACGAAGAGGTTAGCAGAAAT 661 Query 571 TTTCCTCTTCTTCACTGAGCCATTGTTCTTAGCTGATTATCATCTGTGTGTGC-TTCAAT 629 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||| Sbjct 662 TTTCCTCTTCTTCACCGAGCCATTGTTGTTAGCTGATTATCATCTGTGTGTGCCTT-AAT 720 Query 630 AAATTT--T--AT---G-TCAAATTCAAAACAATTGCAATGCTTAAGCCTTGTGACTACA 681 |||| | | || | ||||||||| | || ||||||||||| | |||||||| | Sbjct 721 AAATCTACTCCATTTAGGTCAAATTCAGAGCATTTGCAATGCTTGTGAGTTGTGACTGTA 780 Query 682 CACTCTTTTGATTAGAGGaaaa-aaa-CTTGAAAC-GATTTATTAT--GTTACTATTTCA 736 | ||||||||||| ||||||| ||| |||||||| | |||||||| ||| ||||| || Sbjct 781 C--TCTTTTGATTACAGGAAAAGAAAACTTGAAACAG-TTTATTATAAGTTTCTATTGCA 837 Query 737 GTGAGCTTCGTTG 749 ||||||||||||| Sbjct 838 GTGAGCTTCGTTG 850 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36369522428 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5