BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476299
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1275 0.0
> AT1G71780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast
hits to 34 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:26995086-26996650
REVERSE LENGTH=926
Length=926
Score = 1275 bits (690), Expect = 0.0
Identities = 824/885 (93%), Gaps = 23/885 (3%)
Strand=Plus/Plus
Query 1 TAGTCATGTCATCGATGAC------GGAGAAGGAGAGAGAT------CCACCACAGCAAG 48
||||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 8 TAGTCATGTCATCGATGACGGAGAAGGAGAAGGAGAGAGATCCACCACCACCACATCAAG 67
Query 49 AGATTGAAGAGACTACTCCGTTGCTCGACGATTCTCAACCGGAAGGTGAATTGAGATCGA 108
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 68 AGATTGAAGAGACTACTCCGTTGCTCGAAAATTCTCAACCGGAAAGTGAATTGAGATCGA 127
Query 109 CGACCGCGACGGCAAAGGTACCGGAGGTGGAGATCCATCTGTATAAGTGTGGAAAAGGTC 168
|||||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 128 CGACCGCGGCGGCGAAGGTTCCTGAGGTGGAGATTCATCTGTATAAGTGTGGAAAAGGTC 187
Query 169 CGATCGATGTGTTCAAGTCAAATCTCGGCGGTTATGAGCAGGATCAGCTCGAGGTTCGAT 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CGATCGATGTGTTCAAGTCAAATCTCGGCGGTTATGAGCAGGATCAGCTCGAGGTTCGAT 247
Query 229 CTATTCTTGATAAGTATGGATTGAAATCAATCTTCGCTTTCAACGTTGAGAAAGGTCGTG 288
|||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 248 CTATTCTTGAGAAATATGGCTTGAAAGCAATCTTCGCTTTCAACGTTGAGAAAGGTCGTG 307
Query 289 CTGTTCCGATCAGATTTCACCCTAGGAATGGTCGGTCTGTGTTGCCTTATAGGGATGGTG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CTGTTCCGATCAGATTTCACCCTAGGAATGGTCGGTCTGTGTTGCCTTATAGGGATGGTG 367
Query 349 CCGTCATTTACATCGACGGTGAACCTCAGGATTCCCTTCTCAAACCCATCACAAGAATCA 408
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 368 CCGTCATTTACATCGACGGTGAACCTCAGGATTCCCTGCTCAAACCCATCACCAGAATCA 427
Query 409 TTCTCGGAGTTGTGATTGTTACGCTCTTAATAACATTTTTATTGAAAGACCCTCCAGCGT 468
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 428 TTCTCGGAGTTGTGATTGTTACGCTCTTAATAACATTTCTATTGAAAGACCCTCCAGCTT 487
Query 469 GGATCAAGAACAACATCTCCATTGGTACTTTTCCTCCGTGGGTGCTCGCTTGCATAGTTA 528
||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||
Sbjct 488 GGATCAAGAACAACATCTCCATTGGGACCTTTCCTCCATGGGTGCTCGCATGCATAGTTA 547
Query 529 TAGTATTCACTCGAGCTAGGAAGAGAACCAGAGACTTCTTCAAGAAGTATGGCTGGTAGT 588
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 548 TAGTTTTCACTCGAGCTAGAAAGAGAACCAGGGACTTCTTCAAGAAGTATGGCTGGTAGT 607
Query 589 TTCGCAGACCCTAACACTCGTCTTGCTTGAAATGTGGTCGAAATTTGTAGTCCTTCATCG 648
||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 608 TTCGCAGACCCTAACACTCGTCTCGCTTAAAATGTGGTCGAAATTTGTAGTCTTTCATCG 667
Query 649 ACCATATATATAGAGGTTTTCTTGTCTTAACCCAACAAGTTCCTCT-CCTTGGCAACACT 707
|||||||||||||||||| ||||| |||||||||||||||||| || ||||||||| |||
Sbjct 668 ACCATATATATAGAGGTTCTCTTGCCTTAACCCAACAAGTTCC-CTTCCTTGGCAAGACT 726
Query 708 CTTTGTCTTTGATAAGCCTTGAGGCGCCAAATTGCTTGCTTTCAGAACTAAGAGAGAGCA 767
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CTTCGTCTTTGATACGCCTTGAGGCGCCAAATTGCTTGCTTTCAGAACTAAGAGAGAGCA 786
Query 768 AGCATTTTCTTCATTTGCATCTTGTTGAAATTTTTAGTTTTATGCATTTCCATGTGTAAT 827
| |||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 787 ATCATTTTCTTCATTTGCATTTTGTTGAAGTTTATAGTTTTATGCATTTCCATGTGTAAT 846
Query 828 GTGATGTGGTTAAAGTGGATTTTGCCATTTTGATGGAAACTGATA 872
| ||| ||||| | || ||||||||||||||||||||||
Sbjct 847 GCGATTTGGTT----T---TT--GCCATTTTGATGGAAACTGATA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5