BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476300
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71790.1 | Symbols: | Subunits of heterodimeric actin filam... 1308 0.0
> AT1G71790.1 | Symbols: | Subunits of heterodimeric actin filament
capping protein Capz superfamily | chr1:26996809-26998977
FORWARD LENGTH=1023
Length=1023
Score = 1308 bits (708), Expect = 0.0
Identities = 787/825 (95%), Gaps = 6/825 (1%)
Strand=Plus/Plus
Query 1 GTCTTCTCAGAGGAGAAGTGttttttttttCTCCGGCGAGGTT-GAGAAAAATGGAGGCA 59
|||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 12 GTCTTCTCAGAGGAGAAGTG--TTTTTTTTCTCCGGCGAGGTTGGAAAAAAATGGAGGCA 69
Query 60 GCGTTGGGACTTCTGAGAAGAATGCCGCCGAAACAGTCGGAGACGGCTCTCTCTGCACTT 119
|| ||||||||||| | |||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 70 GCTTTGGGACTTCTCCGGAGAATGCCGCCGAAGCAGTCGGAGACGGCTCTATCTGCTCTT 129
Query 120 CTAAGTCTCATTCCTCAACATTCTTCCGATCTTCTCTCTCAAGTCGATCTCCCTCTTCAG 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CTAAGCCTCATTCCTCAACATTCTTCCGATCTTCTCTCTCAAGTCGATCTCCCTCTTCAG 189
Query 180 GTGTTGCGTGATATTGAAAGTGGGAAAGATTTCATCTTGTGTGAGTACAATAGAGATGCT 239
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 190 GTGTTACGTGATATTGAAAGTGGGAAAGATTTCATCTTGTGTGAGTATAATAGAGATGCA 249
Query 240 GATTCCTACAGGTCACCTTGGTCGAATAAGTACCTTCCTCCGCTAGAGGATGCTCTTTAC 299
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 250 GATTCCTACAGGTCACCTTGGTCAAATAAGTATCTTCCTCCGCTAGAGGATGCTCTTTAC 309
Query 300 CCATCGTCAGAATTAAGAAAGCTTGAAGTTGAAGCCAATGATATCTTTGCAATCTACCGT 359
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 310 CCATCTTCTGAATTAAGAAAGCTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGT 369
Query 360 GACCAGTATTATGAAGGTGGTATATCTTCAGTCTACATGTGGGAGGATGATAATGAAGGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GACCAGTATTATGAAGGTGGTATATCTTCAGTCTACATGTGGGAGGATGATAATGAAGGC 429
Query 420 TTTGTGGCATGTTTCCTTATCAAAAAGGAAGATGGATCAAAGTCAGGTCATGGTCGGAGG 479
||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||
Sbjct 430 TTTGTGGCATGTTTCCTTATCAAGAA--A-GATGGGTCAAAGTCAGGTCATGGTCGGAGG 486
Query 480 GGATGCCTGGAGGAAGGAGCGTGGGATGCCATACATGTTATACAGGTTGGTCCAGAGGAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 487 GGATGCCTGGAGGAAGGAGCGTGGGATGCCATACATGTTATACAGGTTGGTTCAGAGGAG 546
Query 540 GAGGAAATGGCACAGTATTGCTTAACAAGTACCATCATGCTCTCTCTGACCACTGATGAT 599
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 547 GAGGAAATGGCACAATATTGCTTAACAAGTACCATCATGCTTTCTCTGACAACTGATGAT 606
Query 600 GAGTCTTCAGGCAAATTTGGCTTATCTGGATCTATTAGAAGACAAATGAAAATGGAGTTA 659
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 607 GAGTCTTCGGGCAAATTCGGCTTATCTGGATCAATTAGAAGACAAATGAAAATGGAGCTA 666
Query 660 GCAGTAGCTGACGGACACCTGTGCAATATGGGGAGAATGATTGAAGAATTGGAAGGCAAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCAGTAGCTGACGGACACCTGTGCAATATGGGGAGAATGATTGAAGAATTGGAAGGCAAA 726
Query 720 CTGAGGAACTCGCTTGATCAGGTTTACTTTGGGAAGACGAGAGAAATGGTTTGCACATTG 779
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 727 CTGAGGAACTCACTTGATCAGGTTTACTTTGGGAAGACAAGAGAAATGGTTTGCACATTG 786
Query 780 CGTCCACCAGCTGAGATTGTACAAATGAGATTACCTGACACCTGA 824
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 787 CGTCCACCAGCTGAGATTGTACAAATGAGATTGCCTGACACCTGA 831
Score = 154 bits (83), Expect = 2e-36
Identities = 134/157 (85%), Gaps = 9/157 (6%)
Strand=Plus/Plus
Query 824 ATTTGTTTGTTTTGGTTGGTCTGATCTTAAACGCTTC-CCTGACTGTTTTGTGTGGATGC 882
||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 875 ATTTGTTTGTTTTGGTTGGTCTGATCTTAAACGCTTCTCC-GAGTGTTTTGTGTGGATGT 933
Query 883 CTCTTACTTTGTTGCGTGTTTTTCTCTGACTTCACCATCATGTGATTACCTTTTTCCATA 942
|||||||| | ||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 934 CTCTTACTCC----CATGTTTTTCTCTGACTTCACCATCATGTGACCATCTTTTCCCATA 989
Query 943 GATATGCAAAGAAATTATGCGGTTTTTAAAGTCGTAT 979
|||| || ||| | |||| ||||| ||||||||||
Sbjct 990 AATAT--AACGAA-TGATGCAGTTTTAAAAGTCGTAT 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5