BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476305
Length=2916
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71820.2 | Symbols: SEC6 | SEC6 | chr1:27009564-27017050 FOR... 1618 0.0
> AT1G71820.2 | Symbols: SEC6 | SEC6 | chr1:27009564-27017050 FORWARD
LENGTH=2993
Length=2993
Score = 1618 bits (876), Expect = 0.0
Identities = 946/980 (97%), Gaps = 4/980 (0%)
Strand=Plus/Plus
Query 1802 GTTATGATTGATTTCCAAGCAGCTGAAAAGAAGAGAGTTGATGAACCTGCTTCTGATATT 1861
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1834 GTTATGATTGATTTCCAAGCAGCTGAAAAGAAGAGAGTTGATGAACCTGCATCTGATATT 1893
Query 1862 GGTCTGGAACCTCTATGCGCTATGATAAACAACAACCTTCGCTGCTATGACCTTGCCATG 1921
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1894 GGTCTGGAACCTCTATGCGCTATGATAAACAACAACCTTCGCTGCTACGACCTTGCCATG 1953
Query 1922 GAGTTGAGTAATAGCACTTTAGAAGCTCTTCCACAGAATTATGCGGAGCAGGTGAATTTT 1981
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1954 GAGTTAAGTAATAGCACTTTAGAAGCTCTTCCACAAAATTATGCAGAGCAGGTGAATTTT 2013
Query 1982 GAAGACACTTGCAAAGGTTTCTTGGAGGTGGCTAAGGAAGCAGTGCATCAAACAGTTCGC 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 GAAGACACTTGCAAAGGTTTCTTGGAGGTGGCTAAGGAAGCAGTGCATCAAACAGTTCGC 2073
Query 2042 GTTATCTTTGAGGATCCAGGAGTTCAGGAATTACTTGTTAAGCTTTACCAGAAAGAATGG 2101
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2074 GTTATCTTTGAGGATCCAGGAGTTCAGGAATTACTTGTCAAGCTTTACCAGAAAGAATGG 2133
Query 2102 TGCGAGGGACAGGTTACCGAGTACCTCGTGGCAACTTTTGGTGATTATTTCACAGATGTG 2161
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2134 TGCGAGGGACAGGTTACCGAGTACCTCGTGGCAACTTTCGGTGATTATTTCACAGATGTG 2193
Query 2162 AAAATGTATGTCGAAGAAAGATCATTTAGAAGATTTGTCGAAGCTTGTTTGGAAGAAACA 2221
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2194 AAAATGTATGTCGAAGAAAGATCATTTAGAAGATTTGTCGAAGCATGTTTGGAAGAAACA 2253
Query 2222 GTTGTTGTTTATGTTGATCATCTCCTAACACAGAAAAACTACATCAAGGAAGAAACTATT 2281
|| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2254 GTCGTTGTCTATGTTGACCATCTCCTAACTCAGAAAAACTACATCAAGGAAGAAACTATT 2313
Query 2282 GAACGGATGAGGCTGGATGAAGAGGTTCTCATGGATTTCTTTAGGGAGTATATAAGTGCA 2341
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2314 GAACGGATGAGGCTAGATGAAGAGGTTCTCATGGATTTCTTTAGGGAGTATATAAGTGCA 2373
Query 2342 TCTAAAGTGGAGAGCAGAATCAGAATAATGAGCGATCTGAGAGAACTTGCATCCGCAGAG 2401
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2374 TCTAAAGTGGAGAGCAGAATCAGAATAATGAGCGATCTGAGAGAACTTGCATCTGCAGAG 2433
Query 2402 AGTCTAGATGCATTTACACTCGTGTACTCGAACATTCTTGAGCACCAGCCTGACTGCCCG 2461
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2434 AGTCTAGATGCATTTACACTCGTGTACTCGAATATTCTAGAGCACCAGCCTGACTGCCCG 2493
Query 2462 GCTGAGGTCGTAGAGAAGCTTGTTAGTCTGCGTGAAGGCATACCACGGAAGGACACAAAA 2521
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2494 GCCGAGGTCGTAGAGAAGCTTGTTAGTCTGCGTGAAGGCATACCACGGAAGGACACAAAA 2553
Query 2522 GAGGTGGTACAAGAGTGCAAAGAGATATATGAGAACACTCTGGTAGATGGTAATCCTCCC 2581
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2554 GAGGTGGTACAAGAGTGCAAAGAGATATATGAGAACACACTGGTAGATGGTAATCCTCCA 2613
Query 2582 AAGACAGGATTTGTATTCCCGAGAGTCAAGTGCTTAGCTGCTTCCAAAGGATCTCTCTGG 2641
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 2614 AAGACAGGATTTGTATTCCCGAGAGTCAAGTGCTTAACTGCTTCCAAAGGATCTATGTGG 2673
Query 2642 CGAAAACTCACTTAATCTGTAAAACAGCGTTCAGCGTTTGCGTCCGCCAGTGCTTTTCAA 2701
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 2674 CGAAAACTCACTTAATCTGTAAAACAGCGTTCAGCGTTTGCGTCCGTAACTGCTTTTCTA 2733
Query 2702 AATTTGGGATGATGTTCTTTCTCCATATTATGGCGTTTGCGTCCATGTCTTCTTCTTT-T 2760
|| | |||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 2734 G-TT-GAGATGATGTTCTTTCTCCAAATTATGGCGTTTGCGTCCATGTCTTCTT-TTTCT 2790
Query 2761 TTGCATGGTATATTTCCTCt 2780
||||||||||| ||||||||
Sbjct 2791 TTGCATGGTATCTTTCCTCT 2810
Score = 1463 bits (792), Expect = 0.0
Identities = 866/901 (96%), Gaps = 7/901 (1%)
Strand=Plus/Plus
Query 1 AAAACCGGCGAGACGGAAAATTTCAGCGTTTCCGAACTTTTCCATTAGAGTCGCGAGACG 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 71 AAAACCGGCGAGACGGAAAATTTCAGCGTTTCCGAAC-TTTCCATTAGAGTCGCGAGACG 129
Query 61 AGAGACGAGACTTGTTCCAGAGATTTAATCGTTGTTTCTCTTCCCAGCTGATCTGCTGCG 120
| ||| |||||| |||||||| |||||||||||| |||||||||||||||| | |||||
Sbjct 130 ATAGATGAGACTCGTTCCAGAAATTTAATCGTTGCTTCTCTTCCCAGCTGA--T-CTGCG 186
Query 121 TTCAACACCACTGTTTCCAGGATCTTCAGAATCAGCGAAGGAAGAAGATAA-AGAACGAC 179
| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 187 TCCAACATCACTGTTTCCAGGATCTTCAGAATCAGCGAAGGAAGAAGATAAGAGGACGAC 246
Query 180 GAAGTAATTGGAGTTGAAGAATCGCAAATTTGGCTCTCTCGATATTTGCTCAATGACTTC 239
|||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 247 GAAGTAATTGAAGTTGGAGAATCGCACATTTGG--CTCTCGATATTTGCTCAATGACTTC 304
Query 240 TTATTCGAGATAGCCTTCAATTTAGGATCGGAGTTCTTAAATAAGGTGATTTAGCGAAGA 299
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 305 TTATTCGAGGTAGCCTTCAATTTAGGATCGGAGTTCGTAAATAAGGTGATTTAGCGAAGA 364
Query 300 TGATGGTCGAAGATCTTGGTGTGGAAGCGAAGGAAGCGGCTGTGCGAGAGGTGGCGAAGC 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 365 TGATGGTCGAAGATCTTGGTGTGGAAGCGAAGGAAGCGGCTGTGCGAGAAGTGGCGAAGC 424
Query 360 TCTTACCCTTACCTGAACTTTTGCAGTCTATTTCTTCAATCAAGGCCGATTACATCGCTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TCTTACCCTTACCTGAACTTTTGCAGTCTATTTCTTCAATCAAGGCCGATTACATCGCTC 484
Query 420 GTCAACAGGCGAATGATGCACAGCTCAGTACCATGGTTGCTGAGCAGGTTGAACAAGCAC 479
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 485 GTCAACAGGCAAATGATGCACAGCTCAGTACTATGGTTGCTGAGCAGGTTGAACAAGCTC 544
Query 480 AAGCTGGGTTAGAGTCGCTTTCTTCATCTGAGAAAACCATTTATGAACTGAGGGATAATT 539
|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 545 AAGCTGGGTTAGAGTCACTTTCATCATCTGAGAAAACCATTTATGAACTGCGGGATAATT 604
Query 540 TCATTTCTATCGACAAGCTTTGTCAAGAATGTCAAACTTTGATTGACAATCATGACCAAA 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 605 TCATTTCTATCGACAAGCTTTGTCAGGAATGTCAAACTTTGATTGACAATCATGACCAAA 664
Query 600 TAAAGCTGCTGAGTAATGCCAGGAATAATCTAAACAAAACTCTAAAGGATGTAGAAGGTA 659
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TAAAGCTGCTGAGTAACGCCAGGAATAATCTAAACAAAACTCTAAAGGATGTAGAAGGTA 724
Query 660 TGATGTCAATTTCTGTTGAAGCTGCTGCGGCTCGGGAGTCTCTGAGTGACGATAAAGAAA 719
|||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||
Sbjct 725 TGATGTCAATTTCTGTTGAAGCTGCTGCGGCTAGGGATTCTTTGAGTGATGATAAAGAAA 784
Query 720 TCGTTAACACTTACGAGAGATTAACAGCACTTGATGGTAAACGAAGATTTGCGTTAGCAG 779
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 785 TCGTTAACACTTATGAGAGATTAACAGCACTTGATGGTAAACGAAGATTTGCATTAGCAG 844
Query 780 CTGCTGGAGAGGAGGTTGGGAGGCTGAGGGAGTATTTTGAAGATGTTGATAGAACATGGG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CTGCTGGAGAGGAGGTTGGGAGGCTGAGGGAGTATTTTGAAGATGTTGATAGAACATGGG 904
Query 840 AAACATTCGAGAAGACACTATGGGGTCATGTTTCCAACTATTACAAACTTTCTAAAGAAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AAACATTCGAGAAGACACTATGGGGTCATGTTTCCAACTATTACAAACTTTCTAAAGAAA 964
Query 900 G 900
|
Sbjct 965 G 965
Score = 1208 bits (654), Expect = 0.0
Identities = 692/711 (97%), Gaps = 0/711 (0%)
Strand=Plus/Plus
Query 928 GGTTGTCGAGATGCAAGAAATTCTTGACCAACAACTTGCTGAAGAAGCAGCAGAGGCTGA 987
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1125 GGTTGTTGAGATGCAAGAAATTCTAGACCAACAGCTTGCTGAAGAAGCAGCAGAGGCTGA 1184
Query 988 GGGAGAAGGTGCGATGGCATCTGTAGCAAATCCTCGAAGGCCTGGCAAGAAATCTACTAC 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGGAGAAGGTGCGATGGCATCTGTAGCAAATCCTCGAAGGCCTGGCAAGAAATCTACTAC 1244
Query 1048 AACGTCAGCTTCATCAAAGGGTCTTGCTCAACAGAAGTTAAAAGTTCAAGGGAAAGGCTA 1107
||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1245 AACGTCAGCGTCGTCAAAGGGTCTTGCTCAACAGAAATTAAAAGTCCAAGGGAAAGGCTA 1304
Query 1108 CAAGGACAAATGCTACGAGCAAATTCGAAAGGCAGTTGAAGATCGATTCAACAGGCTTCT 1167
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 1305 CAAGGACAAATGCTACGAGCAAATTCGGAAGGCGGTTGAAGATCGATTCAACAGGCTTTT 1364
Query 1168 GACGCTTGTCTTTGAAGATCTAAAAGCAGCTTTGGAAGAAGCTAGAATGATTGGAGAGGA 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 GACGCTTGTCTTTGAAGATCTAAAAGCAGCTTTGGAAGAAGCTAGAATGATTGGAGAGGA 1424
Query 1228 ACTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCTCCGAGATATGAGATATTTCA 1287
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1425 ACTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCTCCAAGATACGAGATATTTCA 1484
Query 1288 GCTTATGGTGAACCTGTATACCGAGAGATTCATACAAATGCTCAGATTGCTCAGTGACAG 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GCTTATGGTGAACCTGTATACCGAGAGATTCATACAAATGCTCAGATTGCTCAGTGACAG 1544
Query 1348 AGCAAACGATCTGACAAATATAGAGATTTTAAAGGTGACTGGTTGGGTGGTAGAGTACCA 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 AGCAAACGATCTGACAAATATAGAGATTTTAAAGGTGACTGGTTGGGTGGTAGAGTACCA 1604
Query 1408 AGAAAACTTGATTGCACTTGGTGTTGATGATTCGCTAGCTCAAGTGTGTTCTGAGAGTGG 1467
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1605 AGAAAACTTGATTGCACTTGGTGTTGATGATTCACTAGCTCAAGTGTGTTCTGAGAGCGG 1664
Query 1468 TTCAATGGATCCTCTAATGAATGCATATGTTGAAAGAATGCAAGCTACAACGAAGAAATG 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TTCAATGGATCCTCTAATGAATGCATATGTTGAAAGAATGCAAGCTACAACGAAGAAATG 1724
Query 1528 GTACATGAATATCCTTGAGGCGGATAAGGTGCAACCACCaaaaaaaaCAGAGGAAGGGAA 1587
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 1725 GTACATGAATATCCTAGAGGCGGATAAGGTGCAACCACCTAAAAAAACTGAGGAAGGAAA 1784
Query 1588 ATTATACACACCGGCTGCTGTAGATTTATTCAGAATACTTGGAGAGCAAGT 1638
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 ATTATATACACCGGCTGCTGTAGATTTATTCAGAATACTTGGAGAGCAAGT 1835
Score = 191 bits (103), Expect = 4e-47
Identities = 129/140 (92%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 2778 TCttttt-ttACCTTTATTCCTGGATTTGAAAGTTGAAACGTTCGGTGGCCACTTGCACT 2836
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2839 TCTTTTTCTTACCTTTATTCCTGGATTTGAAAGTTGAAACGCTCGGTGGCCACTTGCACT 2898
Query 2837 AGGATATTATCCCGTTGTATTTAGGAGGCATAtttttttGTCGCAAAATGTTAATCGATT 2896
||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
Sbjct 2899 AGGATATTATCCCGTTGTATTTAGGAGGCGTATTTTTTTGTCGCAAATT-TTAAT---T- 2953
Query 2897 TCTACTGTTTCATTGAATTT 2916
||||||||||||| |||||
Sbjct 2954 -CTACTGTTTCATTTAATTT 2972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144932298327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5