BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476307
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71840.1 | Symbols: | transducin family protein / WD-40 rep... 2026 0.0
> AT1G71840.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr1:27022218-27024551 FORWARD LENGTH=1601
Length=1601
Score = 2026 bits (1097), Expect = 0.0
Identities = 1361/1479 (92%), Gaps = 56/1479 (4%)
Strand=Plus/Plus
Query 1 TTGAAAGGGTTTTTGTTTGGGaaaaaaaaaaaGAGAAGAAGGGTTTTTGTA--------C 52
||| ||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 36 TTGGAAGGGTTTTTG-TTGGG----AAAAAAAGAGAAGAAGGGTTTTTGTACTTTGTGTC 90
Query 53 -T-TTGTTCCATCATCGTGACACGTCACA---AC-TTCATCTCCGCCGTCCTCATT-CTG 105
| |||||||||||||||||||||||||| | |||||||||||||||||| || |||
Sbjct 91 TTCTTGTTCCATCATCGTGACACGTCACACCTCCATTCATCTCCGCCGTCCTC-TTCCTG 149
Query 106 TTCTTGGTCGCGGCTGaaaaaaaCTGTGGT-----------G-AG-AGAAGAAGAAGATG 152
||||| |||||||||| ||||||||||||| | || ||||||||||||||
Sbjct 150 TTCTTAGTCGCGGCTGGAAAAAACTGTGGTGAGAGAGAGAAGAAGAAGAAGAAGAAGATG 209
Query 153 AGTAACAATAATAATAATACAGAGATGAATAATCTAGCGATGGAAGAAGAGGATGAAGGA 212
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 AGTAATAATACTAATAATACAGAGATGAATAATCTAGCGATGGAAGAAGAGGATGAAGGA 269
Query 213 GAGATTTTTCTTGGTGAATCCGATGTCCTCCGTGAAATCGATGTCGACGAAGAAGATCTT 272
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GAGATTTTCCTTGGTGAATCCGATGTCCTCCGTGAAATCGATGTCGACGAAGAAGATCTT 329
Query 273 CCTGAGGCAGATGATGATGATATGGACGATGATGCTGAAGAATTTGATGAAAACGATGAC 332
||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 330 CCTGAAGCAGATGATGATGATATGGACGATGATGGTGAACAATTTGATGAAAACGATGAC 389
Query 333 TCTGTTCACACATTCACTGGTCACAAAGGTGAGCTTTATGCATTGGCTTGTAGTCCAACA 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TCTGTTCACACATTCACTGGTCACAAAGGTGAGCTTTATGCATTGGCTTGTAGTCCAACA 449
Query 393 GATGCTACGCTTGTTGCAACTGGAGGTGGAGATGATAAAGCCTTTCTCTGGAAAATTGGT 452
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 450 GATGCTACACTTGTTGCAACTGGAGGTGGAGATGATAAAGCATTTCTCTGGAAAATTGGT 509
Query 453 AATGGAGATTGGGCTGCTGAGCTTCCTGGTCACAAGGACTCTGTCTCTTGTTTAGCTTTT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AATGGAGATTGGGCTGCTGAGCTTCCTGGTCACAAGGACTCTGTCTCTTGTTTAGCTTTT 569
Query 513 AGCTATGATGGACAGTTACTTGCATCTGGTGGATTAGATGGTGTTGTTCAGATCTTTGAT 572
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 570 AGCTATGATGGACAGTTACTTGCTTCTGGAGGATTAGATGGTGTTGTACAGATCTTTGAT 629
Query 573 GCATCATCAGGGAATTTGAAATGTGTTTTCGATGGTCCAGGTGCTGGAATCGAGTGGGTG 632
||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 630 GCATCATCAGGGACTTTGAAATGTGTTTTGGATGGTCCTGGTGCTGGAATCGAGTGGGTG 689
Query 633 AGATGGCATCCGAGAGGACACATTGTATTGGCTGGATCAGAAGATTGTTCTCTATGGATG 692
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 690 AGATGGCATCCGAGAGGACACATTGTGTTGGCTGGATCAGAAGATTGTTCTCTATGGATG 749
Query 693 TGGAATGCTGATAAAGAAGCTTATCTTAATATGTTTTCGGGACATAATCTAAATGTCACT 752
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 750 TGGAATGCTGATAAAGAAGCTTATCTTAATATGTTTTCGGGCCATAATCTAAATGTTACT 809
Query 753 TGCGGTGACTTTACCCCTGATGGTAAACTAATTTGTACTGGCTCTGATGATGCAAGTTTG 812
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 810 TGTGGTGACTTCACCCCTGACGGTAAACTAATTTGTACTGGCTCTGATGATGCAAGTTTG 869
Query 813 ATAGTGTGGAACCCAAAAACTTGCGAAAGCATTCATGTT-TACACTAAA--TCTTTCGCC 869
||||| ||||||||||||||||| |||||||||||| || | |||| || | | |
Sbjct 870 ATAGTATGGAACCCAAAAACTTGTGAAAGCATTCATATTGT----TAAAGGTCAT-C-C- 922
Query 870 TTTTTTGATTCGTGT-GAAATG-CTAACCTCT-GACATTAACTCGAACTCAAGTCTTGCT 926
|| | || || | | | || | | || | |||||||||||||||||||||||||||
Sbjct 923 TTATC--ATACG-GAAGGATTGAC-ATGCT-TAGACATTAACTCGAACTCAAGTCTTGCT 977
Query 927 ATCAGTGGCTCAAAAGACGGTTCTGTTCACATTGTGAATATAGTAACCGGAAAGGTTGTG 986
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 978 ATCAGTGGCTCAAAAGACGGTTCTGTTCACATTGTGAATATAGTCACCGGAAAGGTTGTG 1037
Query 987 AGCTCTTTGACTTCTCATACAGATTCAGTTGAGTGTGTGAAGTTTTCACCAAGCTCCGCA 1046
||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1038 AGCTCCTTGAATTCTCATACAGATTCAGTTGAATGTGTGAAGTTTTCACCAAGCTCCGCA 1097
Query 1047 ACCATCCCGTTGGCTGCAACAGGTGGAATGGACAAGAAGCTTATAATCTGGGATCTGCAG 1106
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ACCATCCCTTTGGCTGCAACAGGTGGAATGGACAAGAAGCTTATAATCTGGGATCTGCAG 1157
Query 1107 CATTCCACTCCCAGATTCATCTGCGACCAC-ACGGAAGGTGTGACATCCCTGACTTGGAT 1165
|||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||||||||
Sbjct 1158 CATTCCACTCCCAGGTTCATCTGCGAGCACGA-GGAAGGTGTGACATCTCTGACTTGGAT 1216
Query 1166 AGGAACATCCAAATACTTGGCCACGGGCTGCGCCGATGGTACAGTGAGCGTTTGGGACAG 1225
|||||| ||||| ||||| ||||| ||||| ||| |||||||||||||| ||||||||||
Sbjct 1217 AGGAACCTCCAAGTACTTAGCCACTGGCTGTGCCAATGGTACAGTGAGCATTTGGGACAG 1276
Query 1226 CTTATTAGGCAACTGCGTCCATACCTACCATGGTCACCAAGATGCGGTCCAGGCCATCTC 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CTTATTAGGCAACTGCGTCCATACCTACCATGGTCACCAAGATGCGGTCCAGGCCATCTC 1336
Query 1286 AGTCTCTACCAACGCGGACTTCATTGTTTCAGTCTCTGTCGATAACACTGCTCGAGTCTA 1345
||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 1337 AGTCTCTACCAACACGGACTTCATTGTTTCGGTATCTGTCGATAACACTGCTAGAGTCTT 1396
Query 1346 TGAGACATCCGAGTTCCAAAACAAAGTGGCATAGGCAAGTGAGAAGAATACTTACAGATA 1405
|||| |||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 1397 TGAGTCATCTGAGTTCCAAAACAAAGTGACATAGGCAAGTGAGGAGAATACTTGCAGATA 1456
Query 1406 CTGTCCAGACATGTGTTGCTATCTGTGTTCGTTGTTGTG 1444
|| ||||||||||| | ||||||||||||||||||||||
Sbjct 1457 CTATCCAGACATGT-T-GCTATCTGTGTTCGTTGTTGTG 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5