BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476308 Length=1617 Score E Sequences producing significant alignments: (Bits) Value AT1G71850.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 2431 0.0 > AT1G71850.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr1:27024732-27026363 REVERSE LENGTH=1632 Length=1632 Score = 2431 bits (1316), Expect = 0.0 Identities = 1523/1623 (94%), Gaps = 14/1623 (1%) Strand=Plus/Plus Query 1 GCTTCACATGAATGTCTTTGAAACACCATTGATGAGCCAAAACCCTCTTAAAACCTAAAA 60 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 4 GCTCCACATCAATGTCTTCGAAACACCATTGATGAGCCAAAACCCTCTTAAACCCTAAAA 63 Query 61 AACCAAATCGCCGATGAAATCCATTTTCCGTACCATTTCTATCCGCCGTCATTCCGGCCA 120 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 64 AATCAAATCGCCGATGAAATCCATTTTCCGTTCCATTTCTATCCGCCGTCATTCCGGCCA 123 Query 121 CCGAACCTTCTCCGATA---CGGCGGTGGAAGATGTCTACAAATTCGTAAGAGACAGAGG 177 |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 124 CCGAACCTTCGCCGATACGTCGGCGGTGGAAGATACCTACAAATTCGTAAGAGACAGAGG 183 Query 178 TCTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGCATCAAGGACCT 237 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 184 ACTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGTATCAAAGACCT 243 Query 238 TATCAGATCGGAGCCTGCAAAATCAGTTCCGGTCTCAGTTATCACCACTA-AGAAAGATT 296 |||||||||||||| ||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 244 AATCAGATCGGAGCCAGCAAAATCAGTTCCGATCTCAGTTATCACCTC-ACAGAAAGATT 302 Query 297 CACTACGAGTTCCTCTCCGTCCAATCGAGTTCATCA-GAAGCTTCCCTTCCGTTTTCCAA 355 |||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||| Sbjct 303 CACTACGAGTTCCTCTTCGTCCAATCGAGTTCAT-ACGTAGCTTCCCTTCCGTTTTCCAA 361 Query 356 GAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTA 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 GAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTA 421 Query 416 AACCTCGACGCCGATGAGCAATTGGTTTACGGTAGTGAGTCTTATAAGCAAGGATTAGCT 475 |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 422 AACCACGATGCCGATGAGCAATTGGTTTACGGTAGTGAGACTTATAAGCAAGGATTAGCT 481 Query 476 GATAGGCTCTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTGGAGATTCTT 535 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 482 GATAGGCTTTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTAGAGATTCTA 541 Query 536 GATTTGTTGAAATGGGATTTAGGTTTACCTCAGGATTATGTTGAAACTATGGTACCTGAG 595 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 542 GATTTGTTGAAATGGGATTTAGGTTTACCTAAGGATTATGTTGAAACTATGGTACCTGAG 601 Query 596 TTTCCTGATTATTTTAGAGTAATCAAATCGAAGTTACGAGGATGTAGTGGCGAATTAGAG 655 ||||||||||| |||||||| ||||||||||||||| ||||||||||||| || ||||| Sbjct 602 TTTCCTGATTACTTTAGAGTTATCAAATCGAAGTTAAGAGGATGTAGTGGTGAGCTAGAG 661 Query 656 CTGGTTTGTTGGAGCAATGATCATGCTATATCTGTGTTGGAGAAGAAAGCTAGAGCAATA 715 |||||||||||||||||||| |||||| |||||||||||||||||||||||||| || || Sbjct 662 CTGGTTTGTTGGAGCAATGAGCATGCTGTATCTGTGTTGGAGAAGAAAGCTAGAACATTA 721 Query 716 GGTAAAGGAGAGTATAAGAAAGAATCCGCGATTGCTTTTCCTATGAAGTTTTCAAATGGT 775 ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||| |||||| Sbjct 722 CGTAAAGGAGAGTATACGAAAGGATCGGCGATTGCTTTTCCGATGAAGTTTTCGAATGGT 781 Query 776 TTTGTGGTTGATAAGAAGATGAAGAAATGGATCGATGATTGGCAGAAATTGCCATATATT 835 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 782 TTTGTGGTTGATAAGAAGATGAAGAAATGGATTGATGATTGGCAGAAGTTGCCGTATATT 841 Query 836 TCTCCTTATGAGAATGCACTTCATCTGTCGGCGACTAGCGATGAGTCTGATAAGTGGGCG 895 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 842 TCTCCTTATGAGAATGCACTTCATCTGTCTGCGACTAGCGATGAGTCTGATAAGTGGGCG 901 Query 896 GCTGCTGTTTTGCATGAAATCATGAACCTTTTTGTGTCGAAGAAGATTGAGAAAGATGCC 955 || ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| Sbjct 902 GCGGCTGTTTTGCACGAGATCATGAACCTTTTTGTGTCGAAGAAGGTTGAGAAAGATGCT 961 Query 956 ATTTTGCATCTTGGTGAGTTTATGGGATTGAGGTCAAGGTTTAAGAGAGTTCTCCATAAC 1015 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 962 ATTTTGCATCTTGGTGAGTTTATGGGATTGAGATCGAGGTTTAAGAGAGTTCTCCATAAT 1021 Query 1016 CATCCAGGGATCTTTTACTTGTCAAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGAT 1075 ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1022 CATCCTGGTATCTTTTACTTGTCTAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGAT 1081 Query 1076 GGTTACAAGAGGGGGATGTTGATAGAGAGCAATGAATTGGTGACAAGCAGGAACCGTTAC 1135 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1082 GGTTACAAGAGGGGGATGTTGATAGAGAGTAATGAATTGGTGACAAGCAGGAACCGTTAC 1141 Query 1136 ATGAAACTCATGAATACAGTTAAGAAAGAAAATAAGGCAGTTCCTTCTAGCAGCAAGAGA 1195 ||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| | Sbjct 1142 ATGAAACTCATGAATACAGTTAAGAAAGATAACAAGGCAGTTTCTTCGAGCAGCAAGAAA 1201 Query 1196 GAAGATAAGGGGAAAGTGGAAGGCGCAGTTTGTGATACTAATGCAAAGGCTGAGAATGAT 1255 ||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||| Sbjct 1202 GAAGATAAGGGGAAAGTGGAAGGGGAAGTTTGTGATACTGATGCGAAGGCTGAGAATGAT 1261 Query 1256 GACATTTCTGGTTCTGATGTCGAAAATGATCATCAAGGAGACTTTGTTGATGATGACGAG 1315 ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1262 GACATTTCTGGTTCTGATGTCGAGGATGATCGTCAAGGAGACTTTGTTGATGATGACGAG 1321 Query 1316 GACGATGATGAAGTGGATCAAAACCAG-AGTCTGAACCGTGGTCGTAGAAATTCAAGTCC 1374 ||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||| Sbjct 1322 GACGATGATGAAGTGGATCAAAACCAGGA-TCTGGAGCGTGGTCGTAGAAATTCAAGTCC 1380 Query 1375 AAGAGCGGGTAGAAGGAGTTTTGGAAACTCGGGTTCAAGGGATAAGCCACAATCGAGGCG 1434 |||| | ||||| ||||||||||||||||| |||||||| |||||| ||||||||||||| Sbjct 1381 AAGATCTGGTAGGAGGAGTTTTGGAAACTCAGGTTCAAGAGATAAGGCACAATCGAGGCG 1440 Query 1435 GAACAAGATCAGTTTAAAGACCGAGAAGAAGAGGAGTCGGATGTATTAAAGACTTAATCC 1494 || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1441 GAGCAAGATCAGTTTAAAGACTGAGAAGAAGAGGAGTCGGATGTATTAGAGACTTAATCC 1500 Query 1495 ATCTTTACTGGTGGCTGCATTTTCAGCGGTTTCGTTTCTTCTCCTGTGTAGTAATCTCAC 1554 | |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1501 AACTTTACCGGTGGCTGCATTTTCAGCAGATTCGTTTCTTCTCCTGTGTAGTAATCTCAC 1560 Query 1555 TCTATAGCTTGTCCGTTTCATTCTTACTTCTCAGGGGAGAACAATCGAGTTTTTATAAAG 1614 ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1561 TCTATAGCTTGCCCGTTTCATTCTTACTTCTCAAGGGAGAA-----GAGTTTTTATAAAG 1615 Query 1615 AGT 1617 ||| Sbjct 1616 AGT 1618 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79869067095 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5