BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476308
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71850.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 2431 0.0
> AT1G71850.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:27024732-27026363 REVERSE LENGTH=1632
Length=1632
Score = 2431 bits (1316), Expect = 0.0
Identities = 1523/1623 (94%), Gaps = 14/1623 (1%)
Strand=Plus/Plus
Query 1 GCTTCACATGAATGTCTTTGAAACACCATTGATGAGCCAAAACCCTCTTAAAACCTAAAA 60
||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 4 GCTCCACATCAATGTCTTCGAAACACCATTGATGAGCCAAAACCCTCTTAAACCCTAAAA 63
Query 61 AACCAAATCGCCGATGAAATCCATTTTCCGTACCATTTCTATCCGCCGTCATTCCGGCCA 120
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 64 AATCAAATCGCCGATGAAATCCATTTTCCGTTCCATTTCTATCCGCCGTCATTCCGGCCA 123
Query 121 CCGAACCTTCTCCGATA---CGGCGGTGGAAGATGTCTACAAATTCGTAAGAGACAGAGG 177
|||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 124 CCGAACCTTCGCCGATACGTCGGCGGTGGAAGATACCTACAAATTCGTAAGAGACAGAGG 183
Query 178 TCTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGCATCAAGGACCT 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 184 ACTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGTATCAAAGACCT 243
Query 238 TATCAGATCGGAGCCTGCAAAATCAGTTCCGGTCTCAGTTATCACCACTA-AGAAAGATT 296
|||||||||||||| ||||||||||||||| |||||||||||||| | | |||||||||
Sbjct 244 AATCAGATCGGAGCCAGCAAAATCAGTTCCGATCTCAGTTATCACCTC-ACAGAAAGATT 302
Query 297 CACTACGAGTTCCTCTCCGTCCAATCGAGTTCATCA-GAAGCTTCCCTTCCGTTTTCCAA 355
|||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||||
Sbjct 303 CACTACGAGTTCCTCTTCGTCCAATCGAGTTCAT-ACGTAGCTTCCCTTCCGTTTTCCAA 361
Query 356 GAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTA 421
Query 416 AACCTCGACGCCGATGAGCAATTGGTTTACGGTAGTGAGTCTTATAAGCAAGGATTAGCT 475
|||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 422 AACCACGATGCCGATGAGCAATTGGTTTACGGTAGTGAGACTTATAAGCAAGGATTAGCT 481
Query 476 GATAGGCTCTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTGGAGATTCTT 535
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 GATAGGCTTTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTAGAGATTCTA 541
Query 536 GATTTGTTGAAATGGGATTTAGGTTTACCTCAGGATTATGTTGAAACTATGGTACCTGAG 595
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 542 GATTTGTTGAAATGGGATTTAGGTTTACCTAAGGATTATGTTGAAACTATGGTACCTGAG 601
Query 596 TTTCCTGATTATTTTAGAGTAATCAAATCGAAGTTACGAGGATGTAGTGGCGAATTAGAG 655
||||||||||| |||||||| ||||||||||||||| ||||||||||||| || |||||
Sbjct 602 TTTCCTGATTACTTTAGAGTTATCAAATCGAAGTTAAGAGGATGTAGTGGTGAGCTAGAG 661
Query 656 CTGGTTTGTTGGAGCAATGATCATGCTATATCTGTGTTGGAGAAGAAAGCTAGAGCAATA 715
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||
Sbjct 662 CTGGTTTGTTGGAGCAATGAGCATGCTGTATCTGTGTTGGAGAAGAAAGCTAGAACATTA 721
Query 716 GGTAAAGGAGAGTATAAGAAAGAATCCGCGATTGCTTTTCCTATGAAGTTTTCAAATGGT 775
||||||||||||||| ||||| ||| |||||||||||||| ||||||||||| ||||||
Sbjct 722 CGTAAAGGAGAGTATACGAAAGGATCGGCGATTGCTTTTCCGATGAAGTTTTCGAATGGT 781
Query 776 TTTGTGGTTGATAAGAAGATGAAGAAATGGATCGATGATTGGCAGAAATTGCCATATATT 835
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 782 TTTGTGGTTGATAAGAAGATGAAGAAATGGATTGATGATTGGCAGAAGTTGCCGTATATT 841
Query 836 TCTCCTTATGAGAATGCACTTCATCTGTCGGCGACTAGCGATGAGTCTGATAAGTGGGCG 895
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 842 TCTCCTTATGAGAATGCACTTCATCTGTCTGCGACTAGCGATGAGTCTGATAAGTGGGCG 901
Query 896 GCTGCTGTTTTGCATGAAATCATGAACCTTTTTGTGTCGAAGAAGATTGAGAAAGATGCC 955
|| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 902 GCGGCTGTTTTGCACGAGATCATGAACCTTTTTGTGTCGAAGAAGGTTGAGAAAGATGCT 961
Query 956 ATTTTGCATCTTGGTGAGTTTATGGGATTGAGGTCAAGGTTTAAGAGAGTTCTCCATAAC 1015
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 962 ATTTTGCATCTTGGTGAGTTTATGGGATTGAGATCGAGGTTTAAGAGAGTTCTCCATAAT 1021
Query 1016 CATCCAGGGATCTTTTACTTGTCAAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGAT 1075
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1022 CATCCTGGTATCTTTTACTTGTCTAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGAT 1081
Query 1076 GGTTACAAGAGGGGGATGTTGATAGAGAGCAATGAATTGGTGACAAGCAGGAACCGTTAC 1135
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1082 GGTTACAAGAGGGGGATGTTGATAGAGAGTAATGAATTGGTGACAAGCAGGAACCGTTAC 1141
Query 1136 ATGAAACTCATGAATACAGTTAAGAAAGAAAATAAGGCAGTTCCTTCTAGCAGCAAGAGA 1195
||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| |
Sbjct 1142 ATGAAACTCATGAATACAGTTAAGAAAGATAACAAGGCAGTTTCTTCGAGCAGCAAGAAA 1201
Query 1196 GAAGATAAGGGGAAAGTGGAAGGCGCAGTTTGTGATACTAATGCAAAGGCTGAGAATGAT 1255
||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||
Sbjct 1202 GAAGATAAGGGGAAAGTGGAAGGGGAAGTTTGTGATACTGATGCGAAGGCTGAGAATGAT 1261
Query 1256 GACATTTCTGGTTCTGATGTCGAAAATGATCATCAAGGAGACTTTGTTGATGATGACGAG 1315
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1262 GACATTTCTGGTTCTGATGTCGAGGATGATCGTCAAGGAGACTTTGTTGATGATGACGAG 1321
Query 1316 GACGATGATGAAGTGGATCAAAACCAG-AGTCTGAACCGTGGTCGTAGAAATTCAAGTCC 1374
||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||
Sbjct 1322 GACGATGATGAAGTGGATCAAAACCAGGA-TCTGGAGCGTGGTCGTAGAAATTCAAGTCC 1380
Query 1375 AAGAGCGGGTAGAAGGAGTTTTGGAAACTCGGGTTCAAGGGATAAGCCACAATCGAGGCG 1434
|||| | ||||| ||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct 1381 AAGATCTGGTAGGAGGAGTTTTGGAAACTCAGGTTCAAGAGATAAGGCACAATCGAGGCG 1440
Query 1435 GAACAAGATCAGTTTAAAGACCGAGAAGAAGAGGAGTCGGATGTATTAAAGACTTAATCC 1494
|| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1441 GAGCAAGATCAGTTTAAAGACTGAGAAGAAGAGGAGTCGGATGTATTAGAGACTTAATCC 1500
Query 1495 ATCTTTACTGGTGGCTGCATTTTCAGCGGTTTCGTTTCTTCTCCTGTGTAGTAATCTCAC 1554
| |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1501 AACTTTACCGGTGGCTGCATTTTCAGCAGATTCGTTTCTTCTCCTGTGTAGTAATCTCAC 1560
Query 1555 TCTATAGCTTGTCCGTTTCATTCTTACTTCTCAGGGGAGAACAATCGAGTTTTTATAAAG 1614
||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1561 TCTATAGCTTGCCCGTTTCATTCTTACTTCTCAAGGGAGAA-----GAGTTTTTATAAAG 1615
Query 1615 AGT 1617
|||
Sbjct 1616 AGT 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5