BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476312

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71865.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   811    0.0  


> AT1G71865.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 33 Blast hits to 33 proteins 
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:27029205-27030560 FORWARD LENGTH=622
Length=622

 Score =  811 bits (439),  Expect = 0.0
 Identities = 547/596 (92%), Gaps = 20/596 (3%)
 Strand=Plus/Plus

Query  1    GAATTCGAAATTAAAGTAAGCAAACATCGTCATTGTCACTTCTTCGGATACCCATACTCA  60
            ||||||||||| |||||||||  | |   |||| |||||||||||| |||||| ||||||
Sbjct  39   GAATTCGAAATCAAAGTAAGC--A-A---TCATCGTCACTTCTTCGAATACCCCTACTCA  92

Query  61   ATTCGATAATCACCCAGAGGAGTTCTAAAGAGCAAGTGTGCTTGTGACTCAAAACCCGTA  120
            | |||| |||||||||||||| |||||||||| |||| ||||||||||| |||||||| |
Sbjct  93   AATCGAGAATCACCCAGAGGATTTCTAAAGAGAAAGTTTGCTTGTGACTGAAAACCCGCA  152

Query  121  TACAAGATACTCACTGAGGCaaaaaaaTAAAATGAGTTTTGCATGCCTCGTGTGCCATAG  180
            ||||||||| |||| | |||    ||| ||||||||||||||||||||||||||||||||
Sbjct  153  TACAAGATAATCACCGGGGC----AAA-AAAATGAGTTTTGCATGCCTCGTGTGCCATAG  207

Query  181  TGTAGAAAGCCCATCCCACTCATTTAGAAGCTACTCTGTTTCTAGCTCAGACAACGAGGG  240
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  208  TGTAGAGAGCCCATCCCACTCATTTAGAAGCTACTCTGTTTCTAGCTCAGACAACGAGGG  267

Query  241  AAGATGCTCTGTGATTGCGAGCTGCCTCACAAGGAAATCACTCATTCAAGCTGCAAGATC  300
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  268  AAGATGCTCTGTGATTGCAAGCTGCCTCACAAGGAAATCACTCATTCAAGCTGCAAGATC  327

Query  301  AAACGCTTTCCCTGCTTCTTCCTCAAAGGTAACCCCACAACCCAATTTCCAAGCAGGTGA  360
             ||| |||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct  328  GAACCCTTTCCCTGCATCGTCATCAAAGGTAACCCCACAACCCAATTTCCAAGCAGGTGA  387

Query  361  AGGAGCCTCACCACGGTTAGTACGAAGCCGTGCAGTGAGAAGAGACATTGTCAGAGACTG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  388  AGGAGCCTCACCACGGTTAGTACGAAGCCGTGCAGTGAGAAGAGACATTGTCAGAGACTG  447

Query  421  GAACTTCAACGAAATCGAGACAGAGCTTT-AAATCAGATCCGACTCTTCTCTTAGGA-TA  478
            ||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||
Sbjct  448  GAACTTCAACGAAATTGAGACAGAGCTTTGAAATCAGATCTGACTCTTCTCTTAGGAATA  507

Query  479  GTATTAGTTTGTTCATCATCTGATCTTCTTCTTTTTCCTCGTGTTCAAGGTTTTGTATTT  538
            |||||||||||||||||| ||| | | ||| || | |||||||||||| |||||||||||
Sbjct  508  GTATTAGTTTGTTCATCAACTG-T-T-CTT-TTGTACCTCGTGTTCAAAGTTTTGTATTT  563

Query  539  GGCTTAGAA---TGCTTTTACAAACAAATAATCTAATATTTTGCTGGCCGTTTATT  591
            |||||||||   ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct  564  GGCTTAGAAGAATGCTTTTACAAACCAATAATCTAATATTTTCCTGGCCGTTTATT  619



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28432527202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5