BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476317
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71910.1 | Symbols: | unknown protein; Has 28 Blast hits to... 1066 0.0
> AT1G71910.1 | Symbols: | unknown protein; Has 28 Blast hits
to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:27064932-27065947 FORWARD
LENGTH=1016
Length=1016
Score = 1066 bits (577), Expect = 0.0
Identities = 795/894 (89%), Gaps = 40/894 (4%)
Strand=Plus/Plus
Query 1 AGAGACAAAATTTTATTTTGTTACCATAATTACATATTTCTTTCG---AAT--A--AAT- 52
||||||||||| ||| |||||||||||| ||||| |||||||||| ||| | |||
Sbjct 1 AGAGACAAAATATTAATTTGTTACCATAGTTACAGATTTCTTTCGAATAATCAATCAATA 60
Query 53 --CAAAA-TCTTTCTCTGCAACTCCTAAAATCCTTAGAGAAAGaaaaaaaagaaaa-aaa 108
||||| ||||||||| ||| ||||||||||||||||||||| ||| ||| |||| | |
Sbjct 61 AACAAAACTCTTTCTCTACAAGTCCTAAAATCCTTAGAGAAAG-AAAGAAATAAAATAGA 119
Query 109 aaaaaaGCGCTTGTTGTAGCAGTTGAAGCAGaaaaaaaaCAGAGTAACGAATCCAACATC 168
| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 ATAAGAGAACTTGTTGTAGCAGTTGAAGCAGAAAATAAACAGAGTAACGAATCCAACATC 179
Query 169 ACAAAACAAAACACAAACTGTGTGTTG----TC-TCTTTGG---TC-C-TC-TCTTCTTC 217
||||||||||||||||||||||||||| || ||||||| || | || ||||||||
Sbjct 180 ACAAAACAAAACACAAACTGTGTGTTGTCTCTCTTCTTTGGTCTTCTCTTCTTCTTCTTC 239
Query 218 -T-TGTTTC----------TTCtt-ttttttGGTTTCTTGATCTCAG-AAAAATGGCTCT 263
| | |||| || || |||||||||||||||||||||| ||||||||||||
Sbjct 240 TTCTTTTTCTTTTTAAGTATTTTTATTTTTTGGTTTCTTGATCTCAGAAAAAATGGCTCT 299
Query 264 GAACAGTGTCTCATCTGAAGAATTTAGCTTCCCATCGCTAGCTTCTCATGATCCTTCTCA 323
||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 300 GAATAGTGTCTCCTCTGAAGAATTTACCTTCCCATCGCTAGCTTCTCATGATTCTTCTCA 359
Query 324 CCATTCTGGTCTCGATTCACCTCCTTTGTGGAAACACTCGCCGGTTAAC-TCCTTCCGCC 382
|||||| ||||| |||||||||||||||||||||||||| |||||| || ||||| ||||
Sbjct 360 CCATTCCGGTCTTGATTCACCTCCTTTGTGGAAACACTCACCGGTT-ACTTCCTTTCGCC 418
Query 383 GGAAAGATTACGACTTTGGTTTAGCGAGATTACTCATTGGAAAAGACGATGATCATGATC 442
|||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||
Sbjct 419 GGAAAGATTACGACTTTGGTTTGGCAAGATTAGTCATTGGAAAAGACGGTGATCATGATC 478
Query 443 AGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATGGACGACAAAGAAGAGG 502
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 AGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATCGACGACAAAGAAGAGG 538
Query 503 AGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAGCCAGAGTT 562
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 AGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAGTCAGAGTT 598
Query 563 TAAGGATTGAACCTGGCGGTGACGGTGGAGAGAAGAAACCGTCTTTGTTTTCCGATGAAA 622
| || |||| || |||||| |||||||||||||||||| || |||||||| ||||||| |
Sbjct 599 TGAGAATTGTACATGGCGGCGACGGTGGAGAGAAGAAAACGGCTTTGTTTCCCGATGAGA 658
Query 623 GCTCTGCCGTGGCGGTGGGGTGTGGGATGAAGTTATCgaagaagacgaagaagaagaaga 682
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 659 GCTCTGCCGTGGCCGTGGGGTGTGGGATGAAGTTATCGAAGAAGACAAAGAAGAAGACGA 718
Query 683 aTCTGAATGTGTTGGTGTTGATGAGGGTTTTGAAGAAACTTATTGTGTTGCGAAGTTCGT 742
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 ATCTGAACGTTTTGGTGTTGATGAGGGTTTTGAAGAAGCTTATTGTGTTGCGAAGTTCGT 778
Query 743 CACAGAGATCGCCGGTGAAAACTCATCCACGGTGATCGATCTCCACCTTGGTAATTGTGA 802
| ||||| |||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct 779 CTCAGAGGTCGCCGGTGAAAACTCATCCACGGTGATTGATCTCCACCGTGATAATTGTGA 838
Query 803 ATTTTGGGGTTATTTTTTAGAGTTTATAAGTTACGGGGCTTTTGTGGAGCAAAT 856
||| ||||||||||| | || || | || ||||||||||||||||||| ||||
Sbjct 839 ATTGGGGGGTTATTTTGTGGAATTCAGAACTTACGGGGCTTTTGTGGAGAAAAT 892
Score = 113 bits (61), Expect = 3e-24
Identities = 68/71 (96%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 856 TAGTTTGAGTGGTTCACAAAAATTAATTTTAGGGTCCTAATATTTTTAATAACACATCTG 915
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 925 TAGTTTGGGTGGTTCACAAAAATTAATTTTAGGGTCCTAA-ATTTTTAATAACACATCTG 983
Query 916 GAGTCTTTTTT 926
||||||||||
Sbjct 984 AAGTCTTTTTT 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5