BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476319
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10330.1 | Symbols: EMB2196, HPA1, HISN6A, ATHPA1 | histidin... 2056 0.0
AT1G71920.2 | Symbols: HISN6B | HISTIDINE BIOSYNTHESIS 6B | chr... 2002 0.0
> AT5G10330.1 | Symbols: EMB2196, HPA1, HISN6A, ATHPA1 | histidinol
phosphate aminotransferase 1 | chr5:3247860-3250138 REVERSE
LENGTH=1614
Length=1614
Score = 2056 bits (1113), Expect = 0.0
Identities = 1306/1398 (93%), Gaps = 18/1398 (1%)
Strand=Plus/Plus
Query 1 AGAAAAATCGAAGCTTTTGACTGATCTCCGTCACTTTAGTCTCCGT-C-CACGACCCTTC 58
||||||| |||||||||||||||||||| ||||||||||||||| | | |||||||||||
Sbjct 72 AGAAAAACCGAAGCTTTTGACTGATCTCAGTCACTTTAGTCTCCCTGCTCACGACCCTTC 131
Query 59 TCGTTTCCTTAGGGTTTTCT-CACTGAATG-CCAT-TTGCC--TC-TCTTCCTGACAAAT 112
|||| | ||||||||| ||| || | || || | || || || ||| | ||| |
Sbjct 132 TCGTCTACTTAGGGTTATCTCCA-T--TTGCCCCTCTT-CCTGTCAACTTTCAGAC-ACG 186
Query 113 ACTGATTGATGGGTGTGATCAATGTCCAGGGCTCTCCATCGTTCTCTATTCATTCTTCAG 172
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 187 A-AAACTGATGGGTGTGATCAATGTTCAGGGCTCTCCATCGTTCTCTATTCATTCTTCAG 245
Query 173 AGGCTAATCTTCGAAAGTCTCGAGCTTTGAGGAAACCCTTGTGCTCAATCCGGAATAGGG 232
|| | ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 246 AGTCAAATCTTCGAAAGTCTCGAGCTTTGAAGAAACCCTTTTGCTCAATCCGGAATAGGG 305
Query 233 TTTATTGTGTTCAGTCTTCAAGTGTAGCTGTAGACGAATCCAAGAACATAACCATGGGAG 292
||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 306 TTTATTGTGCTCAGTCTTCAAGTGCAGCTGTAGACGAATCCAAGAATATAACTATGGGAG 365
Query 293 ACTCTTTTATCCGTCCACATTTGAGACAATTGGCTGCTTATCAGCCAATTTTACCCTTTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ACTCTTTTATCCGTCCACATTTGAGACAATTGGCTGCTTATCAGCCAATTTTACCCTTTG 425
Query 353 AGGTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AGGTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATG 485
Query 413 AGAACCCATATGGTCCTCCTCCAGAGGTTTTTGAAGCATTAGGCAATATCAAATTCCCTT 472
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 486 AGAACCCATATGGTCCTCCTCCAGAGGTTTTTGAAGCATTAGGCAATATGAAATTCCCTT 545
Query 473 ACGTTTATCCTGATCCACAAAGCCGTAGACTTCGTGATGCCCTCACTCTAGACTCTGGTC 532
|||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 546 ACGTTTATCCTGATCCACAAAGTCGTAGACTTCGTGATGCACTGGCTCAAGACTCTGGT- 604
Query 533 TTG-AGTCTGAATACATTCTTGTAGGCTGTGGCGCTGACGAACTGATTGACTTGATCATG 591
||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 605 TTGGAGTCTGAATACATACTTGTAGGCTGTGGTGCTGACGAACTTATTGATTTGATCATG 664
Query 592 AGATGCGTGTTGGATCCTGGGGAGAAGATCATAGACTGCCCTCCGACTTTCTCAATGTAT 651
||||||||||| ||||||||||||||||| ||||| || ||||| |||||||||||||||
Sbjct 665 AGATGCGTGTTAGATCCTGGGGAGAAGATTATAGATTGTCCTCCAACTTTCTCAATGTAT 724
Query 652 GTGTTTGATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGTTCCAAGGAACCCTGATTTC 711
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 725 GTGTTTGATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGTTCCAAGAAACCCCGATTTC 784
Query 712 AGCTTGAATGTTGACCGCATCGCTAAAGTTGTAGAACTAGAAAAACCCAAATGTATATTC 771
||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 785 AGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTC 844
Query 772 CTAACTTCTCCCAACAATCCAGATGGGAGTATCATCAGCGAGGACGATCTGTTGAAGATT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CTAACTTCTCCCAACAATCCAGATGGGAGTATCATCAGCGAGGACGATCTGTTGAAGATT 904
Query 832 CTA-AAGATGCCAATACTTGTTGTTCTAGATGAAGCTTACATCGAATTCTCAGGAGTTGA 890
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CTAGAA-ATGCCAATACTTGTTGTTCTAGATGAAGCTTACATCGAATTCTCAGGAGTTGA 963
Query 891 ATCAAGGATGAAATGGGTGAAGAAGTATGAAAACCTTATCGTTCTCCGCACATTTAGTAA 950
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 964 ATCACGCATGAAATGGGTGAAGAAGTATGAAAACCTTATCGTTCTCCGCACATTTAGCAA 1023
Query 951 ACGAGCTGGTTTAGCTGGACTTCGAGTTGGATATGGAGCGTTTCCATTGAGCATAATCGA 1010
||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1024 ACGAGCTGGTTTAGCCGGGCTTCGAGTTGGATATGGAGCGTTTCCGTTGAGTATAATCGA 1083
Query 1011 GTACCTGTGGAGAGCAAAACAGCCATATAATGTCTCTGTTGCCGGGGAAGTAGCTGCTTT 1070
||||||||||||||||| || || || |||||||||||||| |||||||||||||||||
Sbjct 1084 ATACCTGTGGAGAGCAAAGCAACCGTACAATGTCTCTGTTGCAGGGGAAGTAGCTGCTTT 1143
Query 1071 AGCAGCACTTTCAAATGGAAAATACTTGGAAGATGTGAGAGACGCGTTGGTACGAGAAAG 1130
||||||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1144 AGCAGCACTCTCAAACGGGAAATACTTGGAAGATGTGAGAGACGCCTTGGTACGGGAAAG 1203
Query 1131 AGAGAGACTTTTCGGGCTTTTAAAAGAAGTTCCTTTCTTGAATCCTTACCCGAGCCATTC 1190
||||||||| |||||||| |||||||||||||||||||||||||| || |||||| ||||
Sbjct 1204 AGAGAGACTGTTCGGGCTATTAAAAGAAGTTCCTTTCTTGAATCCATATCCGAGCTATTC 1263
Query 1191 GAATTTCATTCTCTGTGAGGTTACATCTGGAATGGACGCCAAGAAGCTGAAAGAGGATTT 1250
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1264 GAATTTCATTCTCTGTGAGGTTACATCTGGAATGGATGCAAAGAAGCTGAAAGAGGATTT 1323
Query 1251 GGCGAAAATGGGTGTGATGGTTCGTCATTACAACAGTCAAGAGCTTAAGGGTTATGTTCG 1310
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1324 GGCGAAAATGGGTGTGATGGTTCGTCATTACAACAGTCAAGAGCTTAAAGGTTATGTTCG 1383
Query 1311 AGTTTCTGCTGGAAAGCCTGAACACACTGATGTTCTTATGGAGTGTCTTAAGCAATTTTA 1370
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1384 AGTTTCTGCTGGAAAGCCTGAACATACTGATGTTCTCATGGAGTGTCTTAAGCAATTTTA 1443
Query 1371 TTGATTTCCCCATTTGTT 1388
|||| |||||||||||||
Sbjct 1444 TTGACTTCCCCATTTGTT 1461
> AT1G71920.2 | Symbols: HISN6B | HISTIDINE BIOSYNTHESIS 6B | chr1:27067128-27069166
FORWARD LENGTH=1461
Length=1461
Score = 2002 bits (1084), Expect = 0.0
Identities = 1210/1272 (95%), Gaps = 4/1272 (0%)
Strand=Plus/Plus
Query 119 TGATGGGTGTGATCAATGTCCAGGGCTCTCCATCGTTCTCTATTCATTCTTCAGAGGCTA 178
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 39 TGATGGGTGTGATCAATGTTCAGGGCTCTCCATCGTTCTCTATTCATTCTTCAGAGTCAA 98
Query 179 ATCTTCGAAAGTCTCGAGCTTTGAGGAAACCCTTGTGCTCAATCCGGAATAGGGTTTATT 238
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 99 ATCTTCGAAAGTCTCGAGCTTTGAAGAAACCCTTTTGCTCAATCCGGAATAGGGTTTATT 158
Query 239 GTGTTCAGTCTTCAAGTGTAGCTGTAGACGAATCCAAGAACATAACCATGGGAGACTCTT 298
||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 159 GTGCTCAGTCTTCAAGTGCAGCTGTAGACGAATCCAAGAATATAACTATGGGAGACTCTT 218
Query 299 TTATCCGTCCACATTTGAGACAATTGGCTGCTTATCAGCCAATTTTACCCTTTGAGGTAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TTATCCGTCCACATTTGAGACAATTGGCTGCTTATCAGCCAATTTTACCCTTTGAGGTAT 278
Query 359 TGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATGAGAACC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 TGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATGAGAACC 338
Query 419 CATATGGTCCTCCTCCAGAGGTTTTTGAAGCATTAGGCAATATCAAATTCCCTTACGTTT 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 339 CATATGGTCCTCCTCCAGAGGTTTTTGAAGCATTAGGCAATATGAAATTCCCTTACGTTT 398
Query 479 ATCCTGATCCACAAAGCCGTAGACTTCGTGATGCCCTCACTCTAGACTCTGGTCTTG-AG 537
|||||||||||||||| ||||||||||||||||| || ||| |||||||||| ||| ||
Sbjct 399 ATCCTGATCCACAAAGTCGTAGACTTCGTGATGCACTGGCTCAAGACTCTGGT-TTGGAG 457
Query 538 TCTGAATACATTCTTGTAGGCTGTGGCGCTGACGAACTGATTGACTTGATCATGAGATGC 597
||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 458 TCTGAATACATACTTGTAGGCTGTGGTGCTGACGAACTTATTGATTTGATCATGAGATGC 517
Query 598 GTGTTGGATCCTGGGGAGAAGATCATAGACTGCCCTCCGACTTTCTCAATGTATGTGTTT 657
||||| ||||||||||||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 518 GTGTTAGATCCTGGGGAGAAGATTATAGATTGTCCTCCAACTTTCTCAATGTATGTGTTT 577
Query 658 GATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGTTCCAAGGAACCCTGATTTCAGCTTG 717
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 578 GATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGTTCCAAGAAACCCCGATTTCAGCTTG 637
Query 718 AATGTTGACCGCATCGCTAAAGTTGTAGAACTAGAAAAACCCAAATGTATATTCCTAACT 777
||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 638 AATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTCCTAACT 697
Query 778 TCTCCCAACAATCCAGATGGGAGTATCATCAGCGAGGACGATCTGTTGAAGATTCTA-AA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 698 TCTCCCAACAATCCAGATGGGAGTATCATCAGCGAGGACGATCTGTTGAAGATTCTAGAA 757
Query 837 GATGCCAATACTTGTTGTTCTAGATGAAGCTTACATCGAATTCTCAGGAGTTGAATCAAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 758 -ATGCCAATACTTGTTGTTCTAGATGAAGCTTACATCGAATTCTCAGGAGTTGAATCACG 816
Query 897 GATGAAATGGGTGAAGAAGTATGAAAACCTTATCGTTCTCCGCACATTTAGTAAACGAGC 956
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 817 CATGAAATGGGTGAAGAAGTATGAAAACCTTATCGTTCTCCGCACATTTAGCAAACGAGC 876
Query 957 TGGTTTAGCTGGACTTCGAGTTGGATATGGAGCGTTTCCATTGAGCATAATCGAGTACCT 1016
||||||||| || |||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 877 TGGTTTAGCCGGGCTTCGAGTTGGATATGGAGCGTTTCCGTTGAGTATAATCGAATACCT 936
Query 1017 GTGGAGAGCAAAACAGCCATATAATGTCTCTGTTGCCGGGGAAGTAGCTGCTTTAGCAGC 1076
|||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 937 GTGGAGAGCAAAGCAACCATACAATGTCTCTGTTGCAGGGGAAGTAGCTGCTTTAGCAGC 996
Query 1077 ACTTTCAAATGGAAAATACTTGGAAGATGTGAGAGACGCGTTGGTACGAGAAAGAGAGAG 1136
||| ||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 997 ACTCTCAAACGGGAAATACTTAGAAGATGTGAGAGACGCCTTGGTACGGGAAAGAGAGAG 1056
Query 1137 ACTTTTCGGGCTTTTAAAAGAAGTTCCTTTCTTGAATCCTTACCCGAGCCATTCGAATTT 1196
||| |||||||| |||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 1057 ACTGTTCGGGCTATTAAAAGAAGTTCCTTTCTTGAATCCATATCCGAGCTATTCGAATTT 1116
Query 1197 CATTCTCTGTGAGGTTACATCTGGAATGGACGCCAAGAAGCTGAAAGAGGATTTGGCGAA 1256
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1117 CATTCTCTGTGAGGTTACATCTGGAATGGATGCAAAGAAGCTGAAAGAGGATTTGGCGAA 1176
Query 1257 AATGGGTGTGATGGTTCGTCATTACAACAGTCAAGAGCTTAAGGGTTATGTTCGAGTTTC 1316
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1177 AATGGGTGTGATGGTTCGTCATTACAACAGTCAAGAGCTTAAAGGTTATGTTCGAGTTTC 1236
Query 1317 TGCTGGAAAGCCTGAACACACTGATGTTCTTATGGAGTGTCTTAAGCAATTTTATTGATT 1376
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1237 TGCTGGAAAGCCTGAACATACTGATGTTCTCATGGAGTGTCTTAAGCAATTTTATTGACT 1296
Query 1377 TCCCCATTTGTT 1388
||||||||||||
Sbjct 1297 TCCCCATTTGTT 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68373142290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5