BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476324
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71940.2 | Symbols: | SNARE associated Golgi protein family... 1208 0.0
> AT1G71940.2 | Symbols: | SNARE associated Golgi protein family
| chr1:27078524-27080248 FORWARD LENGTH=1235
Length=1235
Score = 1208 bits (654), Expect = 0.0
Identities = 718/750 (96%), Gaps = 0/750 (0%)
Strand=Plus/Plus
Query 139 GGTGATGGCTCCAACACGGATTCTAACAAGAGACGAAGAGCTTGGTGTTATATCTGACGA 198
|||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 254 GGTGATGGCTCCGACTCGGATTCTAACCAGAGACGAAGAGCTTGGTGTTATTTCAGACGA 313
Query 199 TGATGATTCTCCATCGGGTAAAAGATCTAAACTTGATCGCTTCCCTCTTAGCCGGTGGGA 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 314 TGATGATTCTCCATCGGGTAAAAGATCTAAACTTGATCGCTTCCCTCTTAGCCGTTGGGA 373
Query 259 ACTCGCCGTTTCTCTCGGTGTCTTCCTCGTCTTCTCCTCTGGACTCTGTTGTATCTATAT 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 374 ACTCGCCGTTTCTCTCGGTGTCTTCCTCGTCTTCTCCTCTGGACTCTGTTGTATCTACAT 433
Query 319 GACCATGCCTGCTGCTGAATTTGGCAAGCTTAAGCTTCCTAGAAGCATCGCTGATCTCCG 378
||||||||||||||||||||||||||| || || ||||| |||||| |||||||||||||
Sbjct 434 GACCATGCCTGCTGCTGAATTTGGCAAACTCAAACTTCCAAGAAGCCTCGCTGATCTCCG 493
Query 379 TTTGCTCAAAGATAATCTAGCAAACTATGCGAATGAGTATCCGGCGCAGTTCGTTTTAGG 438
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 494 TTTGCTCAAAGATAATCTAGCAAATTATGCGAATGAGTATCCGGCGCAGTTTGTTTTAGG 553
Query 439 GTATTGTGCGACGTACATTTTTATGCAGACCTTTATGATTCCAGGGACTATCTTCATGTC 498
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GTATTGTGCAACGTACATTTTTATGCAGACCTTTATGATTCCAGGGACTATCTTCATGTC 613
Query 499 ATTGTTAGCTGGAGCTCTCTTTGGAGTATTCAAAGGTGTTGTCTTGGTTGTTTTCAATGC 558
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 ACTATTAGCTGGAGCTCTCTTTGGAGTATTCAAAGGTGTTGTCTTGGTTGTTTTCAATGC 673
Query 559 AACTGCGGGAGCTACTTCGTGTTTCTTTTTGTCGAAGTTGATTGGTCGGCCTTTGATTAC 618
||| || |||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 674 AACAGCAGGAGCTACCTCGTGTTTCTTTTTGTCGAAATTGATTGGTCGGCCGTTGATTAC 733
Query 619 TTGGCTATGGCCTGACAAATTAAGATTCTTTCAAGCAGAGATCAGTAAGCGTAGAGATAA 678
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 734 TTGGCTATGGCCTGACAAATTAAGATTCTTTCAAGCAGAGATTAGTAAGCGTAGAGATAA 793
Query 679 GCTTTTGAACTATATGTTGTTTTTGAGGATAACACCAACTCTGCCAAATCTTTTTATCAA 738
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 794 GCTTCTGAACTATATGTTGTTTCTGAGGATAACACCAACTCTGCCAAATCTTTTTATCAA 853
Query 739 TCTTGCTTCTCCTATAGTCGATGTACCTTTCCATGTCTTCTTTTTGGCGACATTGATTGG 798
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TCTTGCATCTCCTATAGTCGATGTACCTTTCCATGTCTTCTTTTTGGCGACATTGATTGG 913
Query 799 TCTCATCCCAGCAGCTTATATAACCGTTAGAGCTGGCCTCGCTATCGGAGATCTCAAATC 858
|||||| || |||||||||||||| || ||||||||||| ||||| ||||||||||||||
Sbjct 914 TCTCATTCCTGCAGCTTATATAACTGTCAGAGCTGGCCTTGCTATTGGAGATCTCAAATC 973
Query 859 GGTGAAAGATCTGTATGATTTCAAGACATT 888
||||||||||||||||||||||||||||||
Sbjct 974 GGTGAAAGATCTGTATGATTTCAAGACATT 1003
Score = 119 bits (64), Expect = 7e-26
Identities = 93/105 (89%), Gaps = 9/105 (9%)
Strand=Plus/Plus
Query 40 CTAGGGTTCATCACTGGAAAATC-AGAATGCAATTGAATCTCTACAAAATCTCTCAGATC 98
||||||||||||||| | ||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 94 CTAGGGTTCATCACT-G-AAATCAAAAATGCAATTAAATCTCTACAAAATCTCTCAGATC 151
Query 99 TAATCCCAGATCTTTGTTG-TTTCT-C-C-GTAA-CCAAATCCCA 138
|||||||||||| |||||| ||||| | | |||| |||| |||||
Sbjct 152 TAATCCCAGATCGTTGTTGGTTTCTTCTCCGTAAACCAA-TCCCA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5