BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476326
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71960.1 | Symbols: ABCG25, ATABCG25 | ATP-binding casette f... 3210 0.0
> AT1G71960.1 | Symbols: ABCG25, ATABCG25 | ATP-binding casette
family G25 | chr1:27082394-27088248 REVERSE LENGTH=2267
Length=2267
Score = 3210 bits (1738), Expect = 0.0
Identities = 1972/2085 (95%), Gaps = 15/2085 (1%)
Strand=Plus/Plus
Query 1 AGCTTTCTTCATTTTCACATCTCTCTCTCTGttttttttttAACTCCGTTTAAATTTTCC 60
|||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AGCTTTCTCCATTTTCACCTCTCTCTCTCTGTGTTTTTTTTAACTCCGTTTAAATTTTCC 60
Query 61 GTCTGAATTTTACAAAGGAAGACCAATGTCAGGTTTTGACGGCGTTGAAAATCAAATGAA 120
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 61 GTCTGAATTTTACAAAGGAACACTAATGTCAGCTTTTGACGGCGTTGAAAATCAAATGAA 120
Query 121 CGGTCCAGATTCATCTCCTCGTCTCTCTCAAGATCCTCGTGAGACTCGCTC---ATTATC 177
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 121 CGGTCCAGATTCATCTCCTCGTCTCTCTCAAGATCCTCGTGAGCCTCGCTCATTATTATC 180
Query 178 ATCTTCTTGTTTCCCAATCACCCTCAAGTTCGTCGATGTGTGTTACCGAGTCAAGATCAA 237
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 181 ATCTTCTTGTTTCCCAATCACCCTCAAGTTCGTTGATGTGTGTTACCGAGTCAAGATCCA 240
Query 238 TGGCATGAGTAGCGATTCTTGTAATTTCAAGAAATTTTTAGGACTAAAACATCAACCGTC 297
||||||||||| ||||||||||||| |||||||| | |||||| ||||||| |||||||
Sbjct 241 TGGCATGAGTAACGATTCTTGTAATATCAAGAAACTATTAGGATTAAAACAAAAACCGTC 300
Query 298 CGATGAGACAAGATCAACGGAGGAGAGGACGATACTAAGCGGTGTCACCGGAATGATATC 357
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CGATGAGACAAGATCGACGGAGGAGAGGACGATACTAAGCGGAGTCACCGGAATGATATC 360
Query 358 TCCGGGCGAGTTTATGGCCGTTCTTGGACCATCGGGAAGTGGTAAATCAACTCTACTTAA 417
|| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||
Sbjct 361 ACCCGGCGAGTTTATGGCCGTTCTTGGACCATCGGGAAGTGGCAAATCTACGCTACTAAA 420
Query 418 CGCAGTCGCAGGGAGACTCCATGGATCAAACCTTACCGGGAAAATACTCATAAACGACGG 477
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 421 CGCAGTCGCAGGGAGACTCCATGGATCAAACCTCACCGGAAAAATACTTATAAACGACGG 480
Query 478 TAAAATAACGAAACAAACATTAAAACGCACCGGATTTGTAGCACAAGACGATCTTCTTTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAAAATAACGAAACAAACATTAAAACGCACCGGATTTGTAGCACAAGACGATCTTCTTTA 540
Query 538 CCCTCACTTAACCGTACGTGAAACCTTAGTTTTCGTCGCCTTGCTTCGTCTTCCTCAGAG 597
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 541 CCCTCACTTAACCGTACGTGAAACCTTAGTTTTCGTGGCTTTGCTTCGTCTTCCTCGGAG 600
Query 598 TCTAACCAGAGACGATAAGA-TCAGAGCCGCTGAATCGGTTATATCGGAGCTTGGTTTAA 656
|||||| ||||||| ||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 601 TCTAACAAGAGACGTTAA-ACTCAGAGCCGCTGAATCGGTTATATCGGAGCTAGGTTTAA 659
Query 657 CGAAATGTGAGAACACAGTCGTTGGAAACACTTTCATTAGAGGGATCTCTGGTGGAGAAA 716
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 660 CGAAATGTGAGAACACAGTCGTTGGGAACACTTTCATTAGAGGTATCTCTGGTGGAGAAA 719
Query 717 GGAAACGAGTGAGTATTGCTCATGAATTGCTAATAAACCCGAGTCTTCTTG-TTCTTGAT 775
|||||||||| ||||| |||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 720 GGAAACGAGTTAGTATAGCTCATGAATTGCTTATAAACCCGAGTCTT-TTGGTTCTTGAT 778
Query 776 GAGCCTACTTCGGGTCTTGATGCTACCGCGGCGCTCCGGTTGGTTCAGACTCTTGCGGGG 835
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 779 GAGCCTACTTCGGGTCTTGATGCTACGGCGGCGCTCCGGTTGGTTCAGACTCTTGCCGGG 838
Query 836 TTGGCTCATGGGAAAGGAAAGACGGTTGTTACGTCGATTCATCAGCCGTCGAGTCGTGTG 895
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 839 TTGGCTCATGGGAAAGGAAAAACGGTGGTTACGTCGATTCATCAGCCGTCGAGTCGTGTG 898
Query 896 TTTCAGATGTTTGATACTGTGCTTCTTTTGAGTGAAGGAAAGTGTTTGTTCGTCGGGAAA 955
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 TTTCAGATGTTTGATACGGTGCTTCTTTTGAGTGAAGGAAAGTGTTTGTTCGTCGGAAAA 958
Query 956 GGAAGAGACGCCATGGCTTACTTTGAGTCCGTCGGATTCTCGCCGGCGTTTCCTATGAAT 1015
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 959 GGAAGAGACGCCATGGCTTACTTTGAATCCGTCGGATTTTCGCCGGCTTTTCCTATGAAT 1018
Query 1016 CCGGCTGATTTTCTTCTTGATCTTGCTAACGGAGTTTGTCAGACTGACGGTGTAACCGAA 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 CCGGCTGATTTTCTTCTTGATCTTGCTAACGGAGTTTGTCAGACTGACGGTGTAACGGAA 1078
Query 1076 CGCGAAAAGCCAAACGTGAGACAAACGCTGGTCACGGCTTATGATACATTGCTAGCCCCA 1135
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CGGGAAAAGCCAAACGTGAGACAAACGCTGGTCACGGCTTATGATACATTGCTAGCCCCA 1138
Query 1136 CAAGTCAAAACTTGCATCGAAGCGTCACAGTTTCCTCAAGAGAACGCGCGTTTTGTGAAA 1195
|||||||||||||| ||||||| |||||| ||||||||||| ||||||||||| ||||||
Sbjct 1139 CAAGTCAAAACTTGTATCGAAGTGTCACATTTTCCTCAAGACAACGCGCGTTTCGTGAAA 1198
Query 1196 ACGCGAGTAAGCGGCGGTGGAATAACAACATGTATTACAACATGGTTTAGCCAACTCTGC 1255
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1199 ACGCGAGTAAACGGCGGTGGAATAACAACATGTATTGCAACATGGTTTAGCCAACTCTGC 1258
Query 1256 ATTCTCCTCCACAGACTTTTAAAAGAACGGCGTCATGAATC-TTTCGACGCACTTCG-AG 1313
||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| |
Sbjct 1259 ATTCTCCTCCACAGACTTTTAAAAGAACGGCGTCACGAATCCTTT-GACTTACTTCGCA- 1316
Query 1314 TTTTCCAAGTCATCGCGGCGTCGTTGCTTTGTGGTCTCATGTGGTGGCACTCTGATTATC 1373
||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1317 TTTTCCAAGTCGTCGCGGCTTCGATCCTTTGTGGTCTCATGTGGTGGCACTCTGATTATC 1376
Query 1374 GAGACATACATGACCGACTAGGCCTACTATTCTTCATATCCATCTTCTGGGGGGTGCTTC 1433
||||| |||||||||||||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 1377 GAGACGTACATGACCGACTAGGCCTACTCTTCTTCATATCCATCTTTTGGGGAGTACTTC 1436
Query 1434 CATCATTTAACGCGGTCTTCACGTTTCCGCAAGAACGTGCGATTTTCACTCGAGAGCGTG 1493
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1437 CATCATTTAACGCGGTCTTCACGTTTCCGCAAGAACGTGCAATTTTCACTAGAGAGCGTG 1496
Query 1494 CGTCCGGTATGTACACACTCTCTTCTTACTTCATGGCCCATGTCCTCGGATCGCTCTCCA 1553
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1497 CGTCCGGTATGTACACACTCTCTTCTTACTTCATGGCCCATGTACTCGGATCGCTCTCCA 1556
Query 1554 TGGAGCTCGTTCTTCCGGC-TGCATTCTTGACGTTAACTTATTGGATGGTCGATCTACGC 1612
||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||
Sbjct 1557 TGGAGCTCGTTCTTCCGGCAT-CATTCTTGACGTTCACTTATTGGATGGTCTATCTACGC 1615
Query 1613 CCCGGTCTTGCCCCATTCCTCCTCACCCTCTCCGTGCTCTTACTATATGTTTTAGCGTCA 1672
||||| | | ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1616 CCCGGGATAGTCCCATTCCTCCTCACCCTCTCCGTGCTTTTACTATACGTTTTAGCGTCA 1675
Query 1673 CAAGGACTTGGACTTGCCCTTGGTGCAGCGATCATGGACGCTAAAAAAGCGTCTACAATC 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CAAGGACTTGGACTTGCCCTTGGTGCAGCGATCATGGACGCTAAAAAAGCGTCTACAATC 1735
Query 1733 GTAACCGTGACAATGCTAGCGTTTGTCTTAACCGGTGGTTACTATGTCAACAAAGTGCCA 1792
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1736 GTGACCGTGACAATGCTAGCGTTTGTCTTAACCGGTGGTTACTACGTCAACAAAGTGCCA 1795
Query 1793 TCCGGAATGGTGTGGTTGAAATACGTCTCCACAACATTTTATTGTTACCGTCTTTTAGTG 1852
||||||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1796 TCCGGAATGGTGTGGATGAAATACGTTTCCACGACGTTTTATTGTTACCGTCTTTTAGTG 1855
Query 1853 GCTG-TCCAATATGGGAGTGGGGAAGAGATATTGCGAATGCTTGGATGTGATTCGAAGGG 1911
|| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1856 GC-GATCCAATACGGGAGTGGGGAAGAGATATTGCGAATGCTTGGATGTGATTCAAAGGG 1914
Query 1912 TAAGCAAGGAGCGGGTGCGGCGACATCGGCTGGATGCCGGTTTGTGGAAGAGGAAGTGAT 1971
||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1915 TAAGCAAGGAGCGAGTGCGGCGACATCGGCTGGATGTCGATTTGTGGAGGAGGAAGTGAT 1974
Query 1972 CGGAGATATTGGTCTATGGACGAGCGTTGGTGTTTTGTTTTTGATGTTTGTTGGGTATAG 2031
||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1975 CGGAGATGTTGGGATGTGGACGAGCGTTGGTGTTTTGTTTTTGATGTTTTTTGGGTATAG 2034
Query 2032 AGTATTGGCATATCTAGCTTTGAGGCGTATTAAACATTAAATAAA 2076
|||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2035 AGTATTGGCATATCTAGCTTTGAGACGTATCAAACATTAAATAAA 2079
Score = 215 bits (116), Expect = 2e-54
Identities = 134/142 (94%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 2068 TTAAATAAAAATGAGTGGGTAAAATTTAGTTTTTAGGGCTT-TAATTCGGAATATTAAGA 2126
|||||||||||||||||||| ||||||| ||||||||| || || ||||||||||||| |
Sbjct 2101 TTAAATAAAAATGAGTGGGT-AAATTTAATTTTTAGGG-TTCTAGTTCGGAATATTAAAA 2158
Query 2127 CGTCGCTAATTGTAATTTTGCGGTTTAGCGACGGGTTCAGTTTTTAACATGTGAAAATGA 2186
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2159 CGTCGCTAATTGTAATTTTGCGATTTAGCGACGGGTTCAGTTTTTAACATGTGAAAATGA 2218
Query 2187 AAATGACAAGTATTTTTAGTTG 2208
|||||||||||||||||| |||
Sbjct 2219 AAATGACAAGTATTTTTAATTG 2240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109537589190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5