BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476333
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72030.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1245 0.0
> AT1G72030.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr1:27110865-27111932 FORWARD LENGTH=900
Length=900
Score = 1245 bits (674), Expect = 0.0
Identities = 789/845 (93%), Gaps = 5/845 (1%)
Strand=Plus/Plus
Query 1 GAAAAATGCTAGAAAAATAAACATGGCTCACTTGTCACAGAGCCTCTACTCCGCCGCCGC 60
|||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct 1 GAAAAATGCTAGAAAAATAAACATGGGTCACTTGCCACAGAGCCTCTACT---CCGCCGC 57
Query 61 TAGACCAAAGTTTCCATATCCTGGAAGCTGCGGCCAAGGAATATATCGACAGAAGCTGAC 120
| ||||||||||||||||||||||||||| ||| | |||| || ||| || |||||||||
Sbjct 58 TGGACCAAAGTTTCCATATCCTGGAAGCTCCGGTCTAGGAGTAGATCAACGGAAGCTGAC 117
Query 121 GTGGAGCCGCTTTCCGGTGATCGTACGGTGCGCATCTACCGAACCGTTAACGAGTTTGAC 180
|||||||||||| |||||| || |||||||||| || || || ||||||||||||||||
Sbjct 118 GTGGAGCCGCTTCCCGGTGTTCCTACGGTGCGCGTCGACGGAGTCGTTAACGAGTTTGAC 177
Query 181 TCAGAATAATGCGGCGGAGATAGAGTTAAAGTATCTAGTGAGTCAACACGGGTGGGACGT 240
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 178 TCAGAATAATGCGGCGGAGATAGAGTTGAAGTATCTGGTGAGTCAACACGGGTGGGACGT 237
Query 241 GAGGAGATTGAATAGAGACGACGAGGATGAGATCAGGAGAGTGTCTCTGGTTCAAGCCGA 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 GAGGAGATTGAATAGAGACGACGAGGATGAGATCAGGAGAGTGTCTCTTGTTCAAGCCGA 297
Query 301 AGCTTTCCACATCCCTCTCGCTCtttttaatgattttttctttatgttttttCAGGCAGA 360
|||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 298 AGCTTTCCACATCCCTCTTGCTCTTTTTGATGATTTTTTCTTCATGTTTTTTCAGGCAGA 357
Query 361 GGTTCTCTCAGCACTTCTTTACAAACTAAAGAATTCACCACCAGACAGATATGCATGTCT 420
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 358 GGTTCTATCAGCACTTCTTTACAAACTAAAGAATTCACCACCTGACAGATATGCATGTCT 417
Query 421 CGTGGCGGAGCAAACGAGCCAACCAGAAACTTCGTCGAGTTCAAGTGTCGTCGGAGTAGT 480
||||||||||||||| || || | ||||||| |||||| |||||||| |||||||||||
Sbjct 418 CGTGGCGGAGCAAACAAGTGAAACTGAAACTTTGTCGAGCTCAAGTGTTGTCGGAGTAGT 477
Query 481 TGATGTCACAGCTCAAA-TGGAAAGTTCAGTACTTTGCCATTTTCCGGGCGTCGAAGAAT 539
|||||| |||||||||| | ||||||||||||||| || |||||||||||||||||||||
Sbjct 478 TGATGTAACAGCTCAAACT-GAAAGTTCAGTACTTCGCTATTTTCCGGGCGTCGAAGAAT 536
Query 540 ATCTTTACGTCTCGGGTTTAGCCGTCTCAAAAGCTCAAAGGAGAAAGAAGATGGCAAGTA 599
|||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 537 ATCTATACGTCTCGGGTTTAGCTGTCTCAAAATCTCAAAGGAGAAAGAAGATGGCAAGTA 596
Query 600 CATTGTTAAAGGCATGTGATGTTTTGTGTTACTTGTGGGGTTTCAAGCTTCTTGCTCTAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CATTGTTAAAGGCATGTGATGTTTTGTGTTACTTGTGGGGTTTCAAGCTTCTTGCTCTAA 656
Query 660 GAGCTTATGAAGACGATGCAGCCGCTAGAAATCTTTACTCTAATGCGGGTTACAGCGTGG 719
|||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||
Sbjct 657 GAGCTTATGAAGACGATGCAGCTGCTAGAAATCTTTACTCGAATGCCGGCTACAGTGTGG 716
Query 720 TCGAGACTGACCCGTTGTGGACCTCTACTTGGATAGGCAGAAAGCGCCGCGTTCTTATGA 779
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 717 TCGAGACTGACCCGTTGTGGACCTCTACTTGGATAGGCAGAAAACGTCGCGTTCTTATGA 776
Query 780 CTAAACGCTTTTCGTAGGCGtttttttCATGTAAATTTTGGTTAAAACAATAAACACACT 839
|||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 777 GTAAACGCTTTTCTTAGGCGTTTTCTTCATGTACATTTTGGTTAAAACAATAAACACACT 836
Query 840 ACCAT 844
|||||
Sbjct 837 ACCAT 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5