BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476336
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72050.2 | Symbols: TFIIIA | transcription factor IIIA | chr... 1027 0.0
> AT1G72050.2 | Symbols: TFIIIA | transcription factor IIIA | chr1:27115082-27117470
FORWARD LENGTH=1481
Length=1481
Score = 1027 bits (556), Expect = 0.0
Identities = 757/851 (89%), Gaps = 25/851 (3%)
Strand=Plus/Plus
Query 459 TGATAAGG-ACACTACTGGTAAG-GGCGATAGTGATAAGGAAAATGCTGGTAATGG-TGA 515
|||||||| | | | ||||| || |||| | |||| |||||||||| || ||||| ||
Sbjct 519 TGATAAGGAAAAAT-CTGGT-AGTGGCGGTTGTGAGAAGGAAAATGAAGGGAATGGCGGA 576
Query 516 TAGTGGTAAAGACAACACTGGTAATGGCGATTCTCAACCCT-CTGAATGTTCAACTGGTC 574
|||||||| ||||| | ||||||||||||||||| | ||| | || |||||||||||||
Sbjct 577 -AGTGGTAAGGACAATAATGGTAATGGCGATTCTC-AGCCTGCGGAGTGTTCAACTGGTC 634
Query 575 AGAAGAAGCTTGTCTGCAAAGAAATTGGTTGTGGGAAAGCCTTTAAGTATCCTTCACAGC 634
||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 635 AGAAGCAGGTTGTCTGCAAAGAAATTGGTTGTGGAAAAGCCTTTAAGTATCCTTCACAGC 694
Query 635 TACAAAAGCATCAGGATTCTCATGTGAAATTGGACTCTGTGGAGGCTTTTTGTTCCGAGC 694
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 695 TTCAAAAGCATCAGGATTCTCATGTGAAATTAGACTCTGTGGAGGCATTTTGTTCCGAGC 754
Query 695 CTGGGTGTATGAAGTACTTTACAAACGAAGAATGCCTCAAGGCACACATAAGATCCTGCC 754
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 755 CTGGGTGTATGAAGTACTTTACCAACGAAGAATGCCTCAAGTCACACATAAGATCCTGTC 814
Query 755 ATCAGCACATCAACTGTGACATATGTGGCTCTAAGCATCTT-AAAAAGAACATCAAGAGA 813
||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||||||
Sbjct 815 ATCAGCACATCAACTGTGAGATATGTGGTTCTAAGCAT-TTGAAAAAGAACATCAAGAGA 873
Query 814 CATCTACGGACCCATGATGAAGATTCCTCACCAGGAGAATTCAAGTGTGAAGTTGAGGGT 873
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 874 CATCTACGGACTCATGATGAAGATTCCTCACCAGGAGAAATCAAGTGTGAAGTTGAGGGT 933
Query 874 TGCTCTTCAACTTTCTCAAAGGCTTCTAATCTTCAGAAACACGTGAAAGCAGTGCATGAG 933
|||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 934 TGCTCTTCGACTTTCTCCAAGGCTTCTAATCTTCAGAAACACATGAAAGCAGTGCACGAT 993
Query 934 GATTTACGTCCCTTTGTCTGCGGTTTTCCAGGTTGTGGCATGAGATTTGCTTACAAACAT 993
||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 994 GATATACGTCCCTTTGTCTGTGGCTTTCCCGGTTGTGGCATGAGATTTGCTTACAAACAT 1053
Query 994 GTCAGAAACAATCACGAGAATTCTGGATGTCACGTTTATACCTGCGGTGATTTTGTTGAA 1053
||||||||||| ||||||||||| || | |||||| |||||||||||||||||||| |||
Sbjct 1054 GTCAGAAACAAGCACGAGAATTCCGGGTATCACGTATATACCTGCGGTGATTTTGTCGAA 1113
Query 1054 ACTGATGAAGATTTCACCTCAAGACCGAGAGGTGGACTAAAGAGGAAGCAAGTTACAGCG 1113
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1114 ACTGATGAAGATTTCACTTCAAGACCGAGAGGTGGACTAAAGAGGAAACAAGTTACTGCG 1173
Query 1114 GAAATGCTGGTACGAAAGAGGGTCATGCCTCCCCGGTTTGATTCAGAAGAACATGAGACT 1173
|||||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||
Sbjct 1174 GAAATGCTGGTACGAAAGAGAGTCATGCCTCCTCGGTTTGATGCAGAAGAACACGAAACT 1233
Query 1174 TGCTAGAAGTATGTACAAAAG--AAG-ATCCAGAACTG-CAGACGATAA-TAGTATGGT- 1227
|||||| ||| || ||| || || ||| | | ||||| | | | | |
Sbjct 1234 TGCTAGTAGT--GTCCAAGCCTTAATTATATTTT-CTGTCTTAAGATAAGT-GAA-G-TA 1287
Query 1228 GTTTTGTGTAAAGTTCTTTTTGTTTGTGTGTTAG-A--AAGAAATATAGAACGACAATAG 1284
|||||||||||||||||||||||||||||||| | | |||||||||||||| |||||||
Sbjct 1288 GTTTTGTGTAAAGTTCTTTTTGTTTGTGTGTTGGTAGGAAGAAATATAGAACTACAATAG 1347
Query 1285 TAAGTAGTAAT 1295
|| ||||||||
Sbjct 1348 TAGGTAGTAAT 1358
Score = 728 bits (394), Expect = 0.0
Identities = 496/546 (91%), Gaps = 4/546 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAAGAAGCTAAAATTGATATAAAGACGTCGGCGAAGAAGGACATACGAAACTAT 60
|||||||||||||||||| ||||| | ||||| |||||||||||||| ||||| || |||
Sbjct 1 ATGGCGGAAGAAGCTAAAGTTGATGTGAAGACTTCGGCGAAGAAGGATATACGCAATTAT 60
Query 61 CTCTGCCAGTATTGCGGAATCAGCAGATCGAAAAAGTATCTCATCACTTCACACATCCAA 120
|| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 61 CTATGCCAGTATTGCGGAATCAGCAGATCTAAAAACTATCTCATCACTAAACACATCCAA 120
Query 121 TCTCATCATCAGATGGAACTTGAAGAGGAAAGAGATGATGAAGATTGTGAGGTTGAAGAA 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 121 TCTCATCATCAGATGGAACTTGAAGAGGAAAGAGATGATGAAGCTTGTGAGGTTGATGAG 180
Query 181 GAGTCTTCAAGTAAACATACTTGTCATGAATGTGGTGCTGAGTTTAAGAAGCCTGCTCAC 240
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GAGTCTTCAAGTAATCATACTTGTCAAGAATGTGGTGCTGAGTTTAAGAAACCTGCTCAC 240
Query 241 TTGAAGCAGCATATGCAGAGCCACTCTCTCGAGAGACCTTTTACTTGCTATGTGGATGAT 300
|||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||
Sbjct 241 TTGAAGCAGCATATGCAGAGTCATTCGCTCGAGAGATCTTTTACTTGCTATGTGGATGAT 300
Query 301 TGTGCTACTAGCTATAGGAGAAAGGATCATCTCAATAGGCATCTTCTTACACATAAAGGG 360
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTGCTGCTAGCTATAGGAGGAAGGATCATCTCAATAGGCATCTTCTTACACATAAAGGG 360
Query 361 AAGCTCTTTAAGTGTCCGAAGGAGAATTGCAAGAGTGAATTCTCAGTACAGGGCAACGTT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 361 AAGCTCTTTAAGTGTCCGAAGGAGAACTGCAAGAGTGAATTCTCAGTACAGGGAAATGTT 420
Query 421 AGTAGGCATGTTAAGAAATGTCATAGTAGTGGCGACAGTGATAAGGACACTACTGGTAAG 480
|||||||||||||||||| |||||||| || | || |||||||||||| ||||||| |
Sbjct 421 GGTAGGCATGTTAAGAAATATCATAGTAATGACAACCGTGATAAGGACAATACTGGTTTG 480
Query 481 GGCGATAGTGATAAGGAAAATGCTGGTAATGGTGAT-AGTGGTAAAGACAACA-CTGGTA 538
|||||| |||||||||| ||| || |||| || ||| | || ||| || || | ||||||
Sbjct 481 GGCGATGGTGATAAGGACAATACTTGTAAGGGGGATGA-TGATAAGGAAAA-ATCTGGTA 538
Query 539 ATGGCG 544
|||||
Sbjct 539 GTGGCG 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64557900870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5