BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476337
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72060.1 | Symbols: | serine-type endopeptidase inhibitors ... 584 2e-166
AT1G72070.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 527 3e-149
> AT1G72060.1 | Symbols: | serine-type endopeptidase inhibitors
| chr1:27118447-27119011 FORWARD LENGTH=461
Length=461
Score = 584 bits (316), Expect = 2e-166
Identities = 358/377 (95%), Gaps = 7/377 (2%)
Strand=Plus/Plus
Query 12 ATACAAGATTTGGGTGATGTCTCTCATCGTAGCAGGAGCTATTCTAGGAGGAGTAATCCC 71
|||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||
Sbjct 56 ATACAAGATTTGGGTGATGTCTTTCATCATAGCAGGAGCTATTTTAGGAGGAATAATCCC 115
Query 72 TGGAGTTACTACAACGAAA-ACAGCGATCGCGTGTCCTCTGTATTGCTTACAAGTAGAGT 130
||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 116 TGGAGTTACTACAAC-AAAGACAGCGATCGCGTGTCCTCTCTATTGCTTACAAGTAGAGT 174
Query 131 ACATGACATGTCCTTCCTCCGGCGATGACAAGCTTCCTCCAAGATGCAATTGTTGTCTTG 190
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 175 ACATGACATGTCCTTCCTCCGGCGCTGACAAGCTTCCTCCAAGATGCAACTGTTGTCTTG 234
Query 191 CTCCAAAAAATTGTACTCTCCATCTCTCTGATTCTACAT-CTATCCATTGTAACAAATGA 249
|||| |||||||||||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 235 CTCCCAAAAATTGTACTCTCCATCTCTCTGATTCTAC-TACTATCCATTGTAGCAAATGA 293
Query 250 T-TATGTCTAGTAAGAAATACCTGATGGTATCCCTCCTTCGAATCCCATCCATTCCTCCC 308
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TATATATCTAGTAAGAAATACCTGATGGTATCCCTCCTTCGAATCCCATCCATTCCTCCC 353
Query 309 ACTCATCGATTTCACCCATTTCTGTAATCTCC-TCTTCTTCTACTTCTTTCTCAAACTTT 367
|||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||
Sbjct 354 ACTCATCGATTTCACCCATTTCTGTAATCTCCAT-TTCTTCTTCTTCTTTCTTAAACTTT 412
Query 368 TGCATCAAACACTGAAA 384
|||||||||||||||||
Sbjct 413 TGCATCAAACACTGAAA 429
> AT1G72070.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:27118621-27119708 REVERSE LENGTH=711
Length=711
Score = 527 bits (285), Expect = 3e-149
Identities = 323/340 (95%), Gaps = 7/340 (2%)
Strand=Plus/Minus
Query 45 AGGAGCTATTCTAGGAGGAGTAATCCCTGGAGTTACTACAACGAAA-ACAGCGATCGCGT 103
|||||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 693 AGGAGCTATTTTAGGAGGAATAATCCCTGGAGTTACTACAAC-AAAGACAGCGATCGCGT 635
Query 104 GTCCTCTGTATTGCTTACAAGTAGAGTACATGACATGTCCTTCCTCCGGCGATGACAAGC 163
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 634 GTCCTCTCTATTGCTTACAAGTAGAGTACATGACATGTCCTTCCTCCGGCGCTGACAAGC 575
Query 164 TTCCTCCAAGATGCAATTGTTGTCTTGCTCCAAAAAATTGTACTCTCCATCTCTCTGATT 223
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 574 TTCCTCCAAGATGCAACTGTTGTCTTGCTCCCAAAAATTGTACTCTCCATCTCTCTGATT 515
Query 224 CTACAT-CTATCCATTGTAACAAATGAT-TATGTCTAGTAAGAAATACCTGATGGTATCC 281
|||| | |||||||||||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 514 CTAC-TACTATCCATTGTAGCAAATGATATATATCTAGTAAGAAATACCTGATGGTATCC 456
Query 282 CTCCTTCGAATCCCATCCATTCCTCCCACTCATCGATTTCACCCATTTCTGTAATCTCC- 340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CTCCTTCGAATCCCATCCATTCCTCCCACTCATCGATTTCACCCATTTCTGTAATCTCCA 396
Query 341 TCTTCTTCTACTTCTTTCTCAAACTTTTGCATCAAACACT 380
| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 395 T-TTCTTCTTCTTCTTTCTTAAACTTTTGCATCAAACACT 357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5