BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476349
Length=461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72170.1 | Symbols: | Domain of unknown function (DUF543) |... 699 0.0
> AT1G72170.1 | Symbols: | Domain of unknown function (DUF543)
| chr1:27156335-27157706 FORWARD LENGTH=567
Length=567
Score = 699 bits (378), Expect = 0.0
Identities = 437/465 (94%), Gaps = 5/465 (1%)
Strand=Plus/Plus
Query 1 AAAATGGCAGAGAAAAAGGATAGTTTGCCACCGGAGTACGATGTGAATGCTAAGTGGGAT 60
|||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 66 AAAATGGCGGAGAAAAAGGATAGTGTGCCACCGGAATACGATGTGAATGCTAAGTGGGAC 125
Query 61 GCATGTCTCGATCTCACTGTCCGCCGCTTCGTTTACTCTTCCCTTGGCGGTGCATTCGCC 120
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 126 GCATGTCTCGATCTCACTGTCCGCCGCTTCGTTTACTCTTCCCTCGGCGGCGCATTTGCC 185
Query 121 GGTCTTCTGTTCTTCAGGAGTCCTGTTACAAGATGGGCATCGATTGCTTTGGGTGCTGGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 186 GGTCTTCTGTTCTTCAGGAGTCCTGTTACAAGATGGGCATCGATTGCTTTAGGTGCTGGA 245
Query 181 ATTGGTATTGGCTCTGCATACACAGATTGTTCTCGTGCTTTTGATGCACCTTCTTCATCT 240
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 246 ATTGGTATTGGCTCTGCATATTCAGATTGTTCTCGTGCTTTTGATTCACCTTCTTCATCT 305
Query 241 TCAGCCAATTTAACAGCTCCCAAGAATACTA---CAGAGACTTCTTCTGTATCTCAGGCT 297
||||| |||||| ||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 306 TCAGCTAATTTAGCAGCTCCCAAGAATAATATTACAGAGACTTCTCCTGTATCTCAGGCT 365
Query 298 GCAGACGAGTAGACAATGTCGATAAAGTGTGAAGTTAGTAACACATCCAATGATCGGGGT 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 366 GCAGACGAGTAGACAATGTCGATAAAGTG-GAAGTTAGTAACACATCCAATGATCGGGGT 424
Query 358 ATTCAGAAACAGAGCTATTATCACGCAATGATT-GTTGAATTGTTTTCTAAACCTGGAAA 416
|||||||||||||||||||||| |||||| || |||||||||||| ||||||||| |||
Sbjct 425 GTTCAGAAACAGAGCTATTATCATGCAATGCTTTGTTGAATTGTTTCCTAAACCTGCAAA 484
Query 417 GACAAGACTCTTTTGAGATAATGTCAAATGTAAAAACCTTCTTTT 461
||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 485 GACAAGAGTCTATTGAGATAATGTCAAATGTAAAAACCTTTTTTT 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21967006313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5