BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476352
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72190.1 | Symbols: | D-isomer specific 2-hydroxyacid dehyd... 1808 0.0
> AT1G72190.1 | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase
family protein | chr1:27167363-27169717 REVERSE LENGTH=1238
Length=1238
Score = 1808 bits (979), Expect = 0.0
Identities = 1103/1163 (95%), Gaps = 7/1163 (1%)
Strand=Plus/Plus
Query 1 ATCTGAGTGATGACGATAATGTTCAAAATCGCGAAAGCTACACTACGAAACAGAAACTCA 60
||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||
Sbjct 13 ATCTGAGTGATGACGATAATGTTTAAAATCGCAAAAGCTACGTTACGAAGCAGAAACTCA 72
Query 61 AGCGTCGCTTCGCTATTCTACTCTCTACAAGCTCGTTCTATCTCCAGGCAAAGTAAGGTG 120
|||||||||||||| ||||||||| | |||||||| |||||||||||||||||||| |||
Sbjct 73 AGCGTCGCTTCGCTCTTCTACTCTATCCAAGCTCGCTCTATCTCCAGGCAAAGTAAAGTG 132
Query 121 GTTAAGACAGAGAGAATGGTTGAGAAAGAAGACATGCATGTAACTCGTG-TCTTATGT-T 178
||||||| |||||||| ||||||||||||||||||||||||||||||| || ||| | |
Sbjct 133 GTTAAGATTGAGAGAATAGTTGAGAAAGAAGACATGCATGTAACTCGTGTTC-TAT-TCT 190
Query 179 GCGGTCCGT-ACTTTCCTGATTCCTACAATTTCACCAGAGAGTACTTGCAACCTTACCCT 237
||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 191 GCGGTCC-TCACTTCCCTGATTCCTACAATTTCACCAGAGAATACTTGCAACCTTACCCT 249
Query 238 TTTATTCAGGTCGATGTTGTCCATTACCGTGATGTCCCTGAGGTTATAAAGAATTATCAT 297
|||||| |||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 250 TTTATTAAGGTTGATGTTGTCCATTACCGCGATGTCCCTGAGGTTATTAAGAACTATCAT 309
Query 298 ATATGTGTGGCAATGACTATGCAAATGGATTCAAATGTTATATCTCGTGCGAGCAAGATG 357
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 310 ATATGTGTGGCAATGACTATGCAAATGGATTCAAATGTTATATCTCGTGCAAGCAACATA 369
Query 358 AAGCTTATTATGCAGTATGGTGTTGGTCTCGATGGTGTTGACGTTGATGCTGCTACTAAA 417
||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||
Sbjct 370 AAGCTTATTATGCAGTACGGTGTTGGTCTCGACGGTGTTGACATTGATGCTGCTACTAAA 429
Query 418 CATGGGATTAAGGTCGCTAGAATTCCTAGTGAGGGTACTGGAAATGCTGCATCTTGCTCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CATGGGATTAAGGTCGCTAGAATTCCTAGTGAGGGTACTGGAAATGCTGCATCTTGCTCT 489
Query 478 GAGATGGCTATATATCTAATGCTGGGTCTTCTTAAGAAACAGAACGAAATGCAATTATCT 537
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 490 GAGATGGCTATATATCTAATGCTGGGACTTCTTAAGAAACAGAACGAAATGCAAATATCT 549
Query 538 CTGAGAAACAGATTACTTGGAGAACCAACCGGTGACACGCTTCTCGGTAAAACTGTATTT 597
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 550 CTGAGAAATAGACTACTTGGAGAACCAACCGGTGACACGCTTCTTGGTAAAACTGTATTT 609
Query 598 ATCTTAGGATATGGAAACATTGGAATAGAGCTGGCTAAACGGTTGAAGCCATTCGGGTCG 657
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 610 ATCTTAGGATATGGAAACATCGGAATAGAGCTGGCTAAACGGTTGAAGCCATTTGGGTCG 669
Query 658 AGAGTAATAGCCACGAAAAGAAGCTGGCCTGCTTCAATCGTCGACTCGGATTCCAGGGTA 717
||||||||||||||||||||| |||||||||||| ||||||||||| || |||||| ||
Sbjct 670 AGAGTAATAGCCACGAAAAGATTCTGGCCTGCTTCTATCGTCGACTCAGACTCCAGGCTA 729
Query 718 GTTGATGAGAAAGGTAGCCATGAAGACATTTACACATTCGCTGGCAAAGCTGATATAGTC 777
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 730 GTTGATGAGAAAGGTAGCCATGAAGACATTTACACATTCGCTGGCAAAGCCGATATAGTC 789
Query 778 GTTGTTTGTTTGAGGCTCAACAAAGAAACGGCCGAAATAGTGAACAAGAAGTTCATATGC 837
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 790 GTTGTTTGTTTGAGGCTCAACAAAGAAACGGCTGAAATAGTGAATAAGGAGTTCATATGC 849
Query 838 TCAATGAAAAAGGGTACTCTTCTTGTAAATATTGCCCGAGGTGGTCTTATTAACTATGAA 897
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 TCAATGAAAAAGGGTGCTCTTCTTGTAAATATTGCCCGAGGTGGTCTTATTAACTATGAA 909
Query 898 TCAGCTTTCCAGAATCTGGAGTCCGGTCATCTAGGAGGCCTTGGGATTGATGTGGCGTGG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TCAGCTTTCCAGAATCTGGAGTCCGGTCATCTAGGAGGCCTTGGGATTGATGTGGCGTGG 969
Query 958 TCTGAGCCGTTTGATCCAAATGATCCGATTTTGAAGTTCAAAAACTTTATTATAACCCCT 1017
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 970 TCTGAGCCGTTTGATCCAAATGATCCTATTTTGAAGTTCAAAAACGTTATAATAACCCCT 1029
Query 1018 CACGTTGCTGGAGTTACCGAATATTCATATAGGTCCATGGCCAAGATTGTCGGAGACCTC 1077
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CATGTCGCTGGAGTTACCGAATATTCATATAGGTCCATGGCCAAGATTGTCGGAGACCTC 1089
Query 1078 GCACTTCAGTTGCATGAAGGACTTCCTCTCACCGGAATCGAATTTGTCAATTAATGAGGT 1137
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1090 GCGCTTCAGTTGCATGAAGGACTTCCTCTCACCGGAATCGAATTCGTCAATTAA-GAGGT 1148
Query 1138 AACATTTTGGTGTAATATCGTCA 1160
|||||||| ||||| ||||||||
Sbjct 1149 AACATTTTCGTGTATTATCGTCA 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5