BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476353
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72200.1 | Symbols: | RING/U-box superfamily protein | chr1... 1788 0.0
> AT1G72200.1 | Symbols: | RING/U-box superfamily protein | chr1:27169795-27171321
REVERSE LENGTH=1527
Length=1527
Score = 1788 bits (968), Expect = 0.0
Identities = 1277/1422 (90%), Gaps = 38/1422 (3%)
Strand=Plus/Plus
Query 9 AGAAATA-AGACAAAGGTTATTGTTTTTCATTGCATGGACCGGAGAGCCAAACCGACGAA 67
||||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 103 AGAAATATAGAC-AA-GTTATTGTTTTTCATTGCATGGACCGGAGAGCCAAACTGACGAA 160
Query 68 AGTTTGGTCCTCATGAACCCCAAAGGTAATAA-TAATCTCAACCGTTCAATCATCGGTGG 126
||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 161 AGTTTGGTCCTCATGAACCCCAAAGGT-AGAACCAATCTCAACCGTTCAATCATCGGTGG 219
Query 127 TCATGATCATGGCTCGATCCTACAACTACTCCTCTTTCTGCTACTCCTCTCCAGCCACGG 186
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TCATGATCATGGCTCGATTCTACAACTACTCCTCTTTCTGCTACTCCTCTCCAGCCACGG 279
Query 187 CGGATTTCAGCTCGTCGCGGGTCAAGCCACTCACGGTGGTTCAGACGTTCCCGGAGATAG 246
|||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 280 TGGATTTAAATTCGTCGCGGGTCAAGCCACTCACGGTGGTTCAGACGTTTCCGGAGATAG 339
Query 247 CTCTCGGTTTGACCCAACCATGGCAATACTCATGATCGTCCTCGTCAGCGTCTTCTTCTT 306
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 340 CTCTCGGTTTGACCCAACCATGGCAATACTCATGATCGTCCTCGTCAGTGTTTTCTTCTT 399
Query 307 TCTCGGGTTTTTCTCGGTCTATATCCGAAGATGTCTTGAGCGAGTCATGGGGATGGACTA 366
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 400 TCTTGGGTTTTTCTCAGTCTATATCCGAAGATGTCTCGAGCGAGTCATGGGGATGGACTA 459
Query 367 CGGAAACCCCAACGACGCCGGAAACTGGTTTGCCACAAACCTGCAACAGGCGCGTGGGCT 426
||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct 460 TGGAAACCCCAACGACGCCGGAAACTGGCTTGCCACGAACCGGCAACAGGCGCGTGGGCT 519
Query 427 CGACGCGTCGGTCATCGAGACTTTTCCAACTTTCCGATACGCAACCGTGAAGGCGCTTAG 486
|||||||||| |||||||||||||||||||||||| |||| | ||||||||| |||||||
Sbjct 520 CGACGCGTCGATCATCGAGACTTTTCCAACTTTCCAATACTCCACCGTGAAGACGCTTAG 579
Query 487 GATCGGCAAAGAAGCGCTTGAGTGTCCTGTTTGCTTAAACGAGTTTGAAGACGATGAAAC 546
||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 580 GATCGGCAAAGAAGCACTCGAGTGTTCTGTTTGCTTAAACGAGTTCGAAGACGATGAAAC 639
Query 547 GCTGCGTTTAATACCCAAATGCTGCCACGTGTTCCATCCTGGTTGCATTGACGCTTGGCT 606
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GCTGCGTTTAATTCCTAAATGCTGCCACGTGTTCCATCCTGGTTGCATTGACGCTTGGCT 699
Query 607 CCACTCTCACGCCACGTGTCCTCTATGCCGCGCTGATCTTGTACCCGTGCCGGGTGAACC 666
|| ||||||| ||||||||||||| ||||||||||||||| | ||||| ||||||||| |
Sbjct 700 CCGCTCTCACACCACGTGTCCTCTTTGCCGCGCTGATCTTATCCCCGTACCGGGTGAATC 759
Query 667 CATCGTCTCTATTCAAATACCCGGTTTAGTTAACGATCCTCCCGGTTCTGATCCGAGCGG 726
||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 760 CATAGTCTCTATTCAAATACCTGGTTTAGTTAACGATCCTCCTGGTTCTGATCCGAACGG 819
Query 727 TGATCGGATTAGAGT-TTTAGGTTCTCCGGACGCACGATTGATTGACTCGGTGGCGTTGA 785
||||||||||||| | |||||||||||| || || ||||||||||| || |||||||| |
Sbjct 820 TGATCGGATTAGA-TCTTTAGGTTCTCCTGATGCGCGATTGATTGAGTCAGTGGCGTTAA 878
Query 786 CTTGTAATCAGAGCATGCCACGTAGGTCTATGTCTACCGGATGGAATTTAGCCGGAATGT 845
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 879 CTTGTAACCAGAGCATGCCACGTAGGTCTATGTCGACCGGATGGAATTTAGCTGGAATGT 938
Query 846 TCACGAATTCTGATCGGACCGGTCAACATTCAGGGAATCTAGACCGATTCACGCTTAAAT 905
||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||| ||
Sbjct 939 TCACGAATTCTGACCGGACCGGTCAACATTCAGAGAATCTCGACCGGTTCACGCTTAGAT 998
Query 906 TACCGCAAGACATTCACAATAAGCTAGTGAATCCCAGCCTTTCAAAAGGCCACGTGTTGT 965
|||| |||||||| || |||||| |||||||||||| ||||||||||| || ||| |
Sbjct 999 TACCACAAGACATACATAATAAGTTAGTGAATCCCAACCTTTCAAAAGTTCATGTGGCCT 1058
Query 966 TACCTCATGTGATGAGTTCAGCGAGAGGATACAGAACCGGAAGCTTAGGAAGTGAGCGAA 1025
||||||| |||||||||||| |||||||||| |||||||| |||||||| |||||| |||
Sbjct 1059 TACCTCAGGTGATGAGTTCAACGAGAGGATATAGAACCGGGAGCTTAGGGAGTGAGAGAA 1118
Query 1026 ACTACTTTTACTATGAACGGTTCGACCAAGATGGCCGGTTAGACCGTAGACCATTCTCAA 1085
| || ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1119 ATTATTTTTATTATGAACGGTTCGACCAAGATGGCCGGTTAGATCGAAGACCATTCTCCA 1178
Query 1086 TAACTCCTCCATACCGGACAGGTTCAATCAATAACACATCACCAGGTGACAGTAGTGATC 1145
|||||||||| ||||||||| |||| |||||| ||| || ||||||| |||| ||| |
Sbjct 1179 TAACTCCTCCGTACCGGACAAGTTCGATCAATCACATGTCTCCAGGTGGCAGTGGTGGTG 1238
Query 1146 AT--G-TGCGTGCTGGTTCACCCAAAAGTTTGCTTCTAGCGATGAAATCACCGTTCGATC 1202
|| | |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 1239 ATAAGGTGCGTGCTAGTTCACCCAAAAGTTTGCTTCTAGCTATGCGATCGCCGTTCGATC 1298
Query 1203 GATTATTTCTTGGAAAGAACAACAACGTCGGTGAGCGTTCGTCGGATCACCTTCGTTCCG 1262
||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 1299 GATTATTTCTTGGAAAGAACAACAACGTCGGGGAAAATTCTTCGGATCACCTTCGTTCCT 1358
Query 1263 GCGATGCTACACCGTCGAATACTGTGTAATTTGGTTATCGAGAAAGT-T-TCTG--CAT- 1317
| |||||||| ||||| |||||||| |||||||||||| |||||||| | |||| |||
Sbjct 1359 GTGATGCTACTCCGTCAAATACTGTATAATTTGGTTATTGAGAAAGTGTCTCTGTACATA 1418
Query 1318 TCTT------C-------A-------GTTTCAACTT-TAATGTCTCGGAACAATCGAACA 1356
|||| | | ||||||| || ||||||| |||||||||||||||
Sbjct 1419 TCTTTATTTTCTTTCTGCATTTTTCAGTTTCAA-TTATAATGTCCCGGAACAATCGAACA 1477
Query 1357 TACGAATTATGGTTTAATAGGAACATTTATGAAATTTTTGGG 1398
||||||||||||||||||| || ||||||||||||||| |||
Sbjct 1478 TACGAATTATGGTTTAATACGA-CATTTATGAAATTTTGGGG 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5