BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476354
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72230.1 | Symbols: | Cupredoxin superfamily protein | chr1... 1360 0.0
> AT1G72230.1 | Symbols: | Cupredoxin superfamily protein | chr1:27188066-27189244
FORWARD LENGTH=918
Length=918
Score = 1360 bits (736), Expect = 0.0
Identities = 856/912 (94%), Gaps = 16/912 (2%)
Strand=Plus/Plus
Query 1 TAGAGCAGAGGAGGAACAAGTCTTTATC-CCTAAATATG-AAAAAAGTTTTCAAAACTTA 58
||||||||| |||||||||||| ||||| || ||||||| ||||||||||| ||||||||
Sbjct 2 TAGAGCAGAAGAGGAACAAGTCCTTATCTCC-AAATATGAAAAAAAGTTTTGAAAACTTA 60
Query 59 AATGATATGAGAGAGCTTTAGTTGGAGGGTAAGTGGACCTAACTCTACTAACTCCAACAT 118
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATG--ATGAGAGAGCTTTAGTTGGAGGGTAAGTGGACCTAACTCTACTAACTCCAACAT 118
Query 119 ATCCTTTAATTTGTTTCCAATCTCTCTATATATTTGATCACAACTTACAAGGAATTTCCT 178
| || | ||||||||||| ||||||||||| || |||||||| |||||||||| |||
Sbjct 119 A-CC-CT--TTTGTTTCCAA--TCTCTATATATCTGCTCACAACTCACAAGGAATTCCCT 172
Query 179 TTGTCACACAATTTTATTAGAATAAAGATACTGTTACACTCAACACACAAAAATGGCAAA 238
| || ||||||||||| | |||||| |||| ||||||| || ||||||||||||||||
Sbjct 173 TAGTTACACAATTTTA--A-AATAAATATACCGTTACACAAAATACACAAAAATGGCAAA 229
Query 239 CTTGAGTACACTTGTTGGTTTTCTTGTCATCATCTTCTTCAATGTGTTTGCACCTGCTTC 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 230 CTTGTGTACACTTGTTGGTTTTCTTGTCATCATCTTCTTCAATGTGTTTGCACCTGCCTC 289
Query 299 TTCTGCCAGTCACCCCGTCGAATGGTCGCTCGGGAAAGACTATAGCTCATTGGCTACCGG 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 290 TTCTGCCAGTCACCCCGTCGAATGGTCGCTCGGGAAAGACTATAGCTCGTTGGCTACCGG 349
Query 359 AAAGTCCTTCGCTGTTGGCGATACCATCGTGTTCAACTATGGTGCGGGTCACACGGTGGA 418
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 350 AAAGTCCTTCGCGGTCGGCGATACCATCGTGTTCAACTACGGTGCGGGTCACACGGTGGA 409
Query 419 CGAAGTGAGCGAAAGTGACTACAAGAGTTGCACATTGGGGAACGCAATTTCTTCGGACAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CGAAGTGAGCGAAAGTGACTACAAGAGTTGCACATTGGGGAACGCAATTTCTTCGGACAG 469
Query 479 TAGTGGAACCACAAGTATAGCTCTCAAGACATCTGGTCCTCACTACTTCATCTGCAGTAT 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 470 TAGTGGAACCACAAGTATAGCTCTCAAGACACCTGGTCCTCACTACTTCATCTGCGGTAT 529
Query 539 CCCCGGCCACTGCACCGGCGGCATGAAGCTCTCTGTCACCGTTCCAGCAGCTTCATCAGG 598
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 530 CCCCGGCCACTGCACTGGCGGGATGAAGCTCTCTGTCATTGTTCCAGCAGCTTCATCAGG 589
Query 599 GGGCAGTACTGGAGACGGTACCACTGACAAAAATACACCCGTACAAGACGGAAAAACTAC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CGGCAGTACTGGAGACGGTACCACTGACAAAAATACACCCGTACAAGACGGAAAAACTAC 649
Query 659 ACCCTCAGAAGGTAAAAAGGCTAGTCCTTCTGCTTCGGGCACGGCCGAGTTGAAGCCGTT 718
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 650 ACCCTCAGAAGGTAAAAAGGCTAGTCCTTCTGCTTCGGCCACGGCCGTGTTGAAGCCGTT 709
Query 719 GGATGCTTTGGTTGTGACTTGTGTAGTTGCATTGTTGTATGCTTTGGCTCTCTCTTAATT 778
|||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 710 GGATGCTTTGGTTGTGACTTGTGTAGTTGCATTGATGTACACTTTGGCTCTCCCTTAATT 769
Query 779 AGTTGGTTTCAAGTGTTTTGCTGTGGTTTGACTCGTTTGAAGGACCAGGCTAGAGGCAGT 838
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGTTGGTTTCTTTTGTTTTCCTGTGGTTTGACTCGTTTGAAGGACCAGGCTAGAGGCAGT 829
Query 839 GCTATTATATGCTTCTTATTATTAATTATCTCTCATGATTTTTCCTATGTTTTGTCTCGT 898
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GCTGTTATATGCTTCTTATAATTAATTATCTCTCATGATTTTTCCTATGTTTTGTCTCGT 889
Query 899 ATTT-TCA-TTT 908
|||| ||| |||
Sbjct 890 ATTTATCAATTT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5