BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476357
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72280.1 | Symbols: AERO1, ERO1 | endoplasmic reticulum oxid... 2556 0.0
> AT1G72280.1 | Symbols: AERO1, ERO1 | endoplasmic reticulum oxidoreductins
1 | chr1:27211845-27214665 REVERSE LENGTH=1763
Length=1763
Score = 2556 bits (1384), Expect = 0.0
Identities = 1643/1762 (93%), Gaps = 42/1762 (2%)
Strand=Plus/Plus
Query 1 ACATAACATTCATTGCTTGCTTAAGACGATCTTCAGACAC-A-AAACACAACAATGGGGT 58
|||| |||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1 ACATGACATTCATTGCTTGCTTAAGACGAACTTCAGACACAACAAACACAACAATGGGGT 60
Query 59 TTTGAGAATTTCCGGAAGACACAAAAAACGTGtttttctttctcttttttGTAAAAGGAT 118
|||||||| ||||||||||| ||||||||||| |||| | | | || |||||||||||||
Sbjct 61 TTTGAGAAATTCCGGAAGACTCAAAAAACGTG-TTTT-TATAT-TTATTTGTAAAAGGAT 117
Query 119 TTATTTG-------TC----T-C---------A-TT-T-ATAATGGGAAGAGGCGGAATC 154
||||||| || | | | || | |||||||||| ||||| ||||
Sbjct 118 TTATTTGTCCCATTTCAATTTCCATTTTTGTAATTTGTCATAATGGGAAAAGGCGCAATC 177
Query 155 AAAGAAGAAGAGAGCGaaaaaaaGAGAAGAACATGGCGATGGCCTTTAGCGACTTTGGTT 214
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 178 AAAGAAGAAGAGAGCGAAAAGAAGAGAAAAACATGGCGATGGCCTTTAGCGACTTTGGTT 237
Query 215 GTTGTGTTTTTGGCAGTTGCTGTGAGCTCTAGGACGAATTCTAATGTCGGTTTCTTCTTC 274
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GTCGTGTTTTTGGCAGTTGCTGTGAGCTCTAGGACGAATTCCAATGTCGGTTTCTTCTTC 297
Query 275 AGCGATCGAAATTCTTGTAGCTGTTCACTTCAGGGAACAGGTAAATACAAAGGTATGGTT 334
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 298 AGCGATCGAAATTCTTGTAGCTGTTCACTTCAGAAAACAGGTAAATACAAAGGTATGATT 357
Query 335 GAGGACTGTTGCTGTGATTACGAAACAGTTGACAATCTTAATAGTGAGGTTTTGAATCCT 394
|||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||
Sbjct 358 GAGGACTGTTGCTGTGATTATGAAACAGTTGACAATCTCAACACTGAGGTTTTGAATCCT 417
Query 395 TTGCTTCAAGATCTCGTCACAACTCCATTTTTTCGGTACTATAAGGTTAAACTGTGGTGT 454
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 418 TTGCTTCAAGATCTCGTCACAACTCCATTTTTCCGGTACTATAAGGTTAAACTATGGTGT 477
Query 455 GACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GACTGCCCATTCTGGCCAGACGATGGAATGTGTCGTTTGCGTGATTGCAGTGTCTGTGAA 537
Query 515 TGTCCAGAGAATGAGTTTCCAGAACCATTTAAAAAGCCATTTGTCCCAGGTCTTCCTTCT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGTCCAGAGAATGAGTTTCCAGAACCATTTAAAAAGCCATTTGTCCCAGGTCTTCCTTCT 597
Query 575 GATGATCTCATGTGTCAAGAGGGAAAACCTCAGGGAGCTGTTGACCGGACTATAGATAAC 634
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 GATGATCTCAAGTGTCAAGAGGGAAAACCTCAGGGAGCTGTTGACCGTACTATAGATAAC 657
Query 635 AGAGCTTTCAGAGGTTGGGTCGAAACCAAGAATCCATGGACGCATGACGATGACACAGAT 694
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAGCATTCAGAGGATGGGTCGAAACCAAGAATCCATGGACGCATGACGATGACACAGAT 717
Query 695 AGCGGTGAGATGACTTATGTCAATCTTCAGTTAAACCCCGAACGATATACTGGTTATACC 754
|| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 718 AGTGGTGAGATGAGTTATGTTAATCTTCAGTTAAACCCCGAACGGTATACTGGTTATACT 777
Query 755 GGACCTTCGGCTAGAAGGATTTGGGACTCCATATATTCGGAAAACTGTCCAAAATATTCA 814
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 778 GGACCTTCAGCTAGAAGGATTTGGGACTCCATATATTCAGAGAACTGTCCAAAATATTCA 837
Query 815 TCTGGGGAGACATGTCCGGAGAAAAAGGTATTGTACAAATTGATATCCGGTCTTCATTCT 874
||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 838 TCTGGGGAGACTTGTCCAGAGAAAAAAGTTTTGTACAAATTGATATCCGGTCTTCATTCT 897
Query 875 TCAATCTCGATGCACATAGCTGCTGATTATCTTCTTGATGAGTCAAGCAACCAGTGGGGA 934
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 898 TCAATCTCGATGCACATAGCTGCTGATTATCTTCTTGATGAGTCTAGAAACCAGTGGGGA 957
Query 935 CAGAATATCGAGCTGATGTATGATCGAATTCTGAGACATCCGGATCGTGTCAGAAATATG 994
||||| || ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||
Sbjct 958 CAGAACATTGAGCTGATGTACGATCGTATTCTTAGACATCCAGATCGTGTCAGAAATATG 1017
Query 995 TACTTCACGTATCTCTTTGTGCTACGTGCTGTAACTAAAGCAACAGCATACTTGGAGCAG 1054
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 TACTTCACGTATCTCTTTGTGCTACGTGCTGTTACTAAAGCAACAGCATACTTGGAGCAG 1077
Query 1055 GCAGAGTATGACACAGGAAACCATGCTGAAGATCTGAAAACACAGTCCTTGATCAAACAG 1114
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 GCAGAGTATGACACAGGAAACCATGCTGAAGATCTGAAAACACAATCCTTGATCAAACAG 1137
Query 1115 TTATTGTATAGTCCAAAACTTCAAACAGCGTGTCCGGTTCCGTTTGATGAAGCTAAGTTG 1174
|| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||
Sbjct 1138 TTGTTGTATAGTCCGAAACTCCAAACAGCTTGTCCTGTTCCGTTTGATGAAGCTAAACTG 1197
Query 1175 TGGCAAGGTCAAAGTGGACCAGAATTGAAACAGCAAATCCAGAAACAATTCAGAAATATA 1234
|||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 1198 TGGCAAGGTCAAAGTGGACCAGAACTGAAACAGCAGATTCAGAAACAATTCAGAAATATA 1257
Query 1235 AGTGCACTAATGGATTGCGTAGGTTGTGAAAAATGCCGGCTTTGGGGGAAACTTCAGGTT 1294
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1258 AGTGCACTAATGGATTGCGTAGGTTGTGAAAAATGCCGACTTTGGGGGAAACTTCAGGTT 1317
Query 1295 CAGGGTCTTGGGACAGCATTGAAAATTCTCTTCTCTGTTGGAAATCAAGACATTGGTGAC 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CAGGGTCTTGGGACAGCATTGAAAATTCTCTTCTCTGTTGGAAATCAAGACATTGGTGAC 1377
Query 1355 CAAACACTGCAACTGCAACGGAATGAGGTGATTGCGCTGGTGAATTTACTCAACCGTCTC 1414
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1378 CAAACACTGCAACTGCAACGGAATGAGGTGATTGCACTGGTGAATTTGCTCAACCGTCTC 1437
Query 1415 TCTGAGTCGGTTAAAATGGTCCACGATATGGGACCTGACGTAGAGCGGCTAATGGAGGAT 1474
|| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 1438 TCCGAGTCGGTTAAAATGGTCCACGATATGAGTCCTGACGTGGAGCGGCTAATGGAGGAT 1497
Query 1475 CAGATAGCTAAAGTATCAGCTAAACCTGGAAGATTAAGAAGAATATGGGATTTAGCTGTC 1534
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1498 CAGATAGCCAAAGTATCAGCTAAACCTGCAAGATTAAGAAGAATATGGGATTTAGCTGTC 1557
Query 1535 TCCTTCTGGTGAGTTACACAACGAACTGTCCAGCTATTAGGCATTCATGGTCAATCTATA 1594
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1558 TCATTCTGGTGAGTTACACAACGAACTATCCAGCTTTTAGGCATTCATGGTCAATCTATA 1617
Query 1595 AAAGCCTAGGATGGATAAGTCATTGTTGTAACGACTGAAGGaaaaaaaa-TCATTATAGA 1653
|||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||
Sbjct 1618 CAAGCCTAGGATGGATA-GTCATTGTTGTAACGAATTAAGGAAAAAAAAATCATTATAGA 1676
Query 1654 GAACTCATACAAAAGAtttttttGTAAAACAGATAAA-GAAATATAGATTCTTGAGGTAA 1712
||| | | |||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 1677 GAA---A-A-----GATTTTTT-GTAAAACAGATAAAAGAAATAGAGATTCTTGAGGTAA 1726
Query 1713 CTAATCCATACTGATACAAAAG 1734
|||||| ||||||| ||| |||
Sbjct 1727 CTAATCTATACTGACACAGAAG 1748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85742530860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5