BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476359
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72310.1 | Symbols: ATL3 | RING/U-box superfamily protein | ... 2082 0.0
> AT1G72310.1 | Symbols: ATL3 | RING/U-box superfamily protein
| chr1:27225897-27227545 FORWARD LENGTH=1649
Length=1649
Score = 2082 bits (1127), Expect = 0.0
Identities = 1400/1523 (92%), Gaps = 53/1523 (3%)
Strand=Plus/Plus
Query 51 TCTTTTTCTACTTCCTCTTCTCATAAACCCTTTTAAC-ATTTCCCTCTCAGCTCCATCAT 109
||||| |||||||||| || ||||||||| | || | | | |||||||||||| |||
Sbjct 115 TCTTTAGCTACTTCCTCCTCCCATAAACCC-TCTACCAAGTAAACTCTCAGCTCCACCAT 173
Query 110 TATTACACATCACTCGGTCTCAATTCCAAGCTCTGTATTCCAATCCTTTGTTGCATTAAC 169
|| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 174 TA--ACACAT--CTCGGTCTCAATTCCGAGCTCTGTATTCCAATCCTTTGTTGCATTTAC 229
Query 170 TCTCTGGGGTTTTGTTTAGTTTGCTTTTCTTCCATTTGGGTACCCA-CCAAA-AG--AA- 224
| |||||| ||||||||| |||| |||||||||||||||||||||| ||||| || ||
Sbjct 230 TTTCTGGGTTTTTGTTTATTTTGATTTTCTTCCATTTGGGTACCCACCCAAAGAGTAAAG 289
Query 225 --T-AA--------AGT--TT-CT-TGCTTTCCCTCACAAAACCCTAAATTTCATATCAC 269
| || || || || ||||||||||||||||||||| ||||||||||| |
Sbjct 290 TTTCAAGCTTTCGTGGTACTTGCTATGCTTTCCCTCACAAAACCCT-AATTTCATATC-C 347
Query 270 -CATCCAATTCCATGTTTTGCTCTGCTCAACTCTCTGTTTCTGCTTCTGAATCATCGTTT 328
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 348 TTATCCAATTCCATGTTTTGCTCTGCTCAACTCTCTGTTTCTACTTCTGAATCGTCGTTT 407
Query 329 TCCTTCATATAACCAAGCCAATTGTGTTGATTCATCTTGGCACATTCATTGTTTTGAGAA 388
|||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 408 TCCTTCATATAACCAAACCAATTCTGTTGAATCATCTTGGCACATTCATTGTTTTGAGAA 467
Query 389 GGAACAGAAAAAGTTCTGATCTTGTCTCC--TTCGCACATCAATGGACGATAATGGATCT 446
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 468 GGAACAGAAAAAGTTCTGATCTTGTC-CCTATTCGCACATCAATGGACGATAATAGATCT 526
Query 447 GCTCATAGCTCAATGTTCGGTGATCTATCAACAGAAGAAGTCACAAGCAAGATCATTCTC 506
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 527 ACTCATAGCTCAATGTTCGGTGACCTATCAACAGAAGAGGTCACAAGTAAGATCATTCTC 586
Query 507 ACAGCAATCATTGTTCTATTCATGGCTGTCCTTTTCGTCCTTATCCTCCATCTTTACGCC 566
|||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||
Sbjct 587 ACAGCAATCATTGTTCTATTCATGGCGGTTCTGTTCGTCCTTATCCTCCATCTATACGCC 646
Query 567 AAACTCTACTGGTGGAGAATAGATCAGCTCc-a-a-caacagcaacaacaacagcaagag 623
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 647 AAACTCTACTGGTGGAGAATAGATCAGCTCCAACAGCAACAGCAACAACAACAGCAAGAG 706
Query 624 caagaacaagaagaagaCCAATCATCCATTGCTCCGCCTGTAGTCACTCGTCGTCAGCGA 683
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 707 CAAGAGCAAGAAGAAGACCAATCATCCATTGCTCCACCTGTAGTCACTCGCCGTCAGCGA 766
Query 684 CGCCGTTTCATCTTCGTCCCAGGCCAAGACGCTCTATCCAACACTGGACTTACCTCTTTT 743
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 767 CGTCGTTTCATCTTCGTCCCAGGCCAAGACGCTCTAAGCAACACTGGACTAACCTCTTTT 826
Query 744 GAACTCAGTTCCTTACCAATTGTCTTTTTCAGACAAGATAGTTGCAAAGATGGTTTGGAA 803
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 827 GAACTTAGTTCCTTACCAATTGTGTTTTTCAGACAAGATAGTTGCAAAGATGGTTTGGAA 886
Query 804 TGCTCTATTTGTTTGTCTGAGCTTGTTAAAGGAGATAAAGCAAGGCTGCTTCCAAAGTGT 863
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 887 TGCTCTATTTGTTTGTCTGAGCTTGTTAAAGGAGATAAAGCTAGGCTGCTTCCAAAGTGT 946
Query 864 AACCATAGCTTCCATGTTGAGTGTATTGACATGTGGTTTCAGTCTCACTCTACTTGTCCG 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AACCATAGCTTCCATGTTGAGTGTATTGACATGTGGTTTCAGTCTCACTCTACTTGTCCG 1006
Query 924 ATTTGTAGAAACACGGTTCTTGGTCCTGA-CAAAGCTAGCTCAAAGAGAGTTGAACAAGT 982
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1007 ATTTGTAGAAACACTGTTCTTGGTCCTGAGCAA-GCTAGCTCAAAGAGAGTTGAACAAGT 1065
Query 983 TCCAGACAATGCAGATCATGCTGGTAGCACCAATAACAACCATGATGCTTTGTCACAAAT 1042
||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 1066 TCCAGACAATGCAGAAAATGCTGGTACCACCAATAACAACCATGATGCTTTGTCTCAACT 1125
Query 1043 TTCAACTTCTTCTCCGGAATTTCCCACCAATGTCTTGGTATGGGGTCGCCAGGATCAGGT 1102
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1126 TTCAACTTCTTCTCCAGAATTTCCCACCAATGTCTTGGTATGGGGTCGTCAGGATCAAGT 1185
Query 1103 TAGTACCGGAAACAACAATGTCGGGCCTCAAGAAGACAGTGTTGCTGGTAATGGTGCTTC 1162
|||||||||||||| |||||| ||| ||||||||||| ||| ||||||||||||||||||
Sbjct 1186 TAGTACCGGAAACACCAATGTTGGGACTCAAGAAGACGGTGCTGCTGGTAATGGTGCTTC 1245
Query 1163 TCAGAGTCAAGAAGCTGTTGTTCTGGATATCAATGATTCTTCCA-TA-ACAAGTCAGAAT 1220
|||||||||||||||||||||||||||||||| |||||||||| || | || ||| |||
Sbjct 1246 TCAGAGTCAAGAAGCTGTTGTTCTGGATATCAGCGATTCTTCCAGTAGA-AA-TCATAAT 1303
Query 1221 GTATCATCTTCGTCGTCATCGATGAGGTTTATTGTTGAGGAGGACGAAGCAAAATCTCCA 1280
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1304 GTATCATCTTCGTCGTCATCTATGAGGTTTATTGTTGAGGAGGAAGAAGCAAAATCTCCA 1363
Query 1281 ATGACAACGAGGTTGAGGTCTTTAAGGAGGTTTTTAAGCAGAGACAAGAGAGTGGCTTgt 1340
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||| ||||
Sbjct 1364 ATGACAACGAGGTTGAGGTCCTTAAGGAGGTTTCTGAGCAGAGACAAGAGAGTGGGTTGT 1423
Query 1341 agcagtagtagtactagtagtagtagtagCAGCTCCAATGCTGTTGCTTCTGTTGATCCT 1400
|||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1424 AGCAATAGTAGTACTAGTA--A-TAGTAGCAGCTCCAATGCTGTTGCTTCTGTTGATCCT 1480
Query 1401 TGAAGATTGTTATTACTTATTAGATTAGCTGAGTGAGATTGCCTGAAGATGTCAAACTGT 1460
|||||||||| | | ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGAAGATTGT-A--A-TTA---GCTTAGCTGAGTGAGATTGCCTGAAGATGTCAAACTGT 1533
Query 1461 GT--ATGTGGTCTCGGCTCTTTATTGGCTGTGTTTGAGAGCTTTCTTTGTCATCCAAGCA 1518
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1534 GTGTATGTGGTCTCGGCTCTTTATTGGCTGTGTTTGAGAGCTTTCTTTGTCATCCAAGTA 1593
Query 1519 AATCATTTATGTATTCCACGGGT 1541
|||||||||| ||||||||||||
Sbjct 1594 AATCATTTATCTATTCCACGGGT 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5