BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476360
Length=2390
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72320.1 | Symbols: APUM23, PUM23 | pumilio 23 | chr1:272288... 3877 0.0
> AT1G72320.1 | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228860-27232997
REVERSE LENGTH=2535
Length=2535
Score = 3877 bits (2099), Expect = 0.0
Identities = 2296/2393 (96%), Gaps = 5/2393 (0%)
Strand=Plus/Plus
Query 1 TCTCTGCGCCGCGTTCTCT-GT-TGAGCTCACGCTTCTTCGTTTCTCCTCTTACGTCAAC 58
||||||||||||||||| | || ||||||||||||| |||||||||||||| ||||||||
Sbjct 40 TCTCTGCGCCGCGTTCT-TAGTCTGAGCTCACGCTTGTTCGTTTCTCCTCTAACGTCAAC 98
Query 59 TGTGTTTTTGCATACTCAGAGGGTTTAACATAGTTGGGGCTAGGAATTTACATGGTTTCA 118
||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 99 TGTGTTTTTGCATCCTCAAAGGGTTTAACATAGTTGGGGCTAGGAATTTTCATGGTTTCT 158
Query 119 GTTGGTTCTAAATCATTGCCATCTAGGAGGCACAGGACTATTGAGGAAGATTGCGTGATG 178
|||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 159 GTTGGTTCTAAATCATTGCCATCTAGGAGGCACAGGACCATTGAGGAAGATAGCTTGATG 218
Query 179 GGTGAACGGGGAAAGTCTAGTAACAATCACGGCGAAAGGAAGAAGGGAATGCGAAGGAAG 238
|||||||| ||||||||||||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 219 GGTGAACGAGGAAAGTCTAGTAACAATCACAGTGAAAGGAATAAGGGAATGCGTAGGAAG 278
Query 239 GACCATAAAAGTGGCCGTGGATTTGATGGAGATAGCAACAAGAGGAATCAATCTGGTGGT 298
|||||||| || |||||||||||||| |||||||| ||||| ||| ||||| ||||||
Sbjct 279 GACCATAAGGGTAACCGTGGATTTGATGTAGATAGCAGCAAGAAGAACCAATCCGGTGGT 338
Query 299 GCCCCCAATGTAAAGCCAGCATCAAAGAAACAATCCGAATTCGAACATCAGAATCAATTT 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 339 GCCCCCAATGTAAAGCCAGCATCAAAGAAACACTCCGAATTCGAACATCAGAATCAATTT 398
Query 359 GTCAGGAAAGAGATTGATCCAGAAACTTCAAAATATTTCTCTGAGATTGCCAATCTCTTT 418
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 399 GTCAGGAAAGAGATTGATCCAGAGACTTCAAAGTATTTCTCTGAGATTGCCAATCTCTTT 458
Query 419 GATAGTAATGAAGTTGAATTAGAGGAACGTTCAGTAATATGTGGAAATGCCCTTGAAGAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GATAGTAATGAAGTTGAATTAGAGGAACGTTCAGTAATATGTGGAAATGCCCTTGAAGAA 518
Query 479 ACAAGAGGGAGGGAATACGAAATTGCAACAGACTATATCATAAGTCATGTCTTGCAAACT 538
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 519 ACAAGAGGGAGGGAGTATGAAATTGCTACAGACTATATCATAAGTCATGTCTTGCAAACT 578
Query 539 CTACTTGAGGGATGTGAACTTGACCAACTCTGCAGTTTCATACGAAATTCTGCAACTGTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 579 CTACTTGAGGGATGTGAACTTGACCAACTCTGCAGTTTCATACGAAATTCTGCTAGTGTG 638
Query 599 TTCCCAGCCATTGCAATGGATAGATCTGGTTCTCATGTTGCAGAGTCTGCTCTCAAATCC 658
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 639 TTCCCAGCCATTGCAATGGATAGATCTGGTTCTCATGTCGCAGAGTCTGCTCTCAAATCC 698
Query 659 TTGGCCACACATCTTGAAAATCCAGATGCCTATTCTGTTATTGAGGAGGCATTGAATTCT 718
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 699 TTGGCCACACATCTAGAAAATCCAGACGCCTATTCTGTTATTGAGGAGGCTTTGCATTCT 758
Query 719 ATATGCAAGGTGATTGTGGATAATCCTCTTGATATGATGTGCAACTGCTATGGTTCTCAT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 759 ATATGCAAGGTGATTGTGGATAATCCTCTTGATATGATGTGCAACTGCTATGGTTCGCAT 818
Query 779 GTTCTTCGAAGGCTTCTTTGTCTTTGCAAAGGAGTCTCTTTAGATTCTCCTGAGCTTTAT 838
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 819 GTACTACGAAGGCTTCTTTGTCTTTGCAAAGGAGTCTCTTTAGATTCCCCTGAGCTTTAT 878
Query 839 GGCGCAAAATCATCAAAAGCTCTGGCCAAACGTTTGAATCTGAAGATGTCTCAGTTGGAT 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 879 GGCGCAAAATCATCAAAAGCTCTGGCCAAACGTTTGAATCTGAAGATGTCTCAGCTAGAT 938
Query 899 GACAATACTCTAGAACTCCCTCATCAAGGGTTTCCAGATATGCTCAAGTACCTTTTATCT 958
||||||| | ||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 939 GACAATAATTTAGAAATCCCTCATCAAGGGTTTCCAGGTATGCTCACGTACCTTTTATCT 998
Query 959 GGGATATTAAATTGTAGCAGAGAGGATATGAAGTATCTTCAAGTCGATCAGTATAGCAGT 1018
||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 999 GGGCTATTAAGTTGTAGCAGAGAGGACATGAAGTATCTTCAAGTCGATCAGTATAGCAGT 1058
Query 1019 TTGGTCTTACAGACGGCTCTCAGACTAATGCTGAAACAAGATGAGGAGTTGCTTGAAATC 1078
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1059 TTGGTCTTACAGACGGCTCTCAGACTAATGCTGAAACAAGATGAGCAGTTGCTTGAAATC 1118
Query 1079 ATTCCACTTATTCTGCGCTGCAACTCTACTAATAAAAAAGTAGAGGGGTTTCATATAGAG 1138
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1119 ATTCCGCTTATTCTGCGCTGCAACTCTACTAATAAAAAAGTAGAAGGGTTTCATATAGAG 1178
Query 1139 ACTAATGTTGCCAAAGAAATTTTAGTGTCAATGAAGGATAATTCATTTAGTCATCTGGTG 1198
||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 1179 ACTAATGTTGCCAAAGAAATTTTAGAGTCGATGAAGGATAATTCATTCAGTCATCTGGTG 1238
Query 1199 GAGGTTATTTTGGAAGTGGCCCCTGAAAGTTTGTATAACGAAATGTTCAACAAAGTTTTC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 GAGGTTATTTTGGAAGTGGCCCCTGAAAGTTTGTATAACGAAATGTTCAACAAAGTTTTC 1298
Query 1259 AAGAATTCTTTATTTGAGCTTTCAGTTGATCGGTGTGCAAATTTTGTTATCCAAGCATTA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1299 AAGAATTCTTTATTTGAGCTTTCAGTTGATCGGTGTGCAAATTTTGTTATTCAAGCATTA 1358
Query 1319 ATCTCCCATGCAAGAGACCAAGAGCAGATGGGCATGATGTGGGAAGAATTAGCTCCAAGA 1378
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1359 ATCTCCCATGCAAGAGACCAAGAGCAGATGGGTATTATGTGGGAAGAATTAGCTCCAAGA 1418
Query 1379 TTCAAGGATCTTCTTGAGCAAGGGAAGTCAGGTGTTGTGGCTTCTCTGATAGCGGTTAGC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1419 TTCAAGGATCTTCTTGAGCAAGGGAAGTCAGGTGTTGTGGCTTCTCTGATAGCAGTTAGC 1478
Query 1439 CAAAGGCTTCAAAGTCATGAACATAAGTGTTGTGAGGCCCTTGTTGGTGCAGTATGCTCC 1498
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1479 CAAAGGCTTCAAAGTCATGAAAATAAGTGTTGTGAGGCCCTTGTTGGTGCAGTATGCTCC 1538
Query 1499 ACAAATGAATCCCGTATCTCCATTGTTCCACGGTTGCTGTTTCTTGATTACTACTTTGGT 1558
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1539 ACAAATGAATCCCGTATCTCCATTCTTCCACGGTTGCTGTTTCTTGATTACTACTTTGGT 1598
Query 1559 TGCCAAGATAAATCTGCATGGGAGTGGGCACCTGGTGCAAAGATGCATGTCATGGGTTGT 1618
|| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 TGTCGAGATAAGTCTACATGGGAGTGGGCACCTGGTGCAAAGATGCATGTCATGGGTTGT 1658
Query 1619 TTGATCCTTCAGGGGATTTTCAAGTTTTCTAGCGATCATATACAGCCATACATAACAAGC 1678
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1659 TTGATACTTCAGGGGATTTTTAAGTTTTCTAGTGATCATATACAGCCATACATAACAAGC 1718
Query 1679 TTAACTTCTATGAAAGCTGAGTATATCACTGAAACAGCAAAAGATTCCAGTGGAGCACGT 1738
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1719 TTAACTTCTATGAAAGCTGAGTATATCACTGAAACGGCAAAAGATTCCAGTGGAGCACGT 1778
Query 1739 GTCATCGAGGCCTTTCTTACCTCAAATGCTGCTACAAAACAGAAACGCAGACTAATTATA 1798
|||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1779 GTCATCGAGGCCTTTCTTGCCTCAGATGCTGCTACAAAACAGAAACGTAGACTAATTATA 1838
Query 1799 AAGTTACGTGGACATTTTGGCGAGCTCTCATTACACACATCTGGTTCATTTACAGTTGAG 1858
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1839 AAATTACGTGGACATTTTGGCGAGCTCTCATTACACACGTCTGGTTCATTTACAGTTGAG 1898
Query 1859 AAGTGCTTCGATGCATGTAATTTGACACTAAGGGAAGCCATAGCAACTGAACTGTTGGAT 1918
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1899 AAGTGCTTCGATGCATGTAATTTGACACTAAGGGAAGCCATAGCATCTGAACTGTTGGAT 1958
Query 1919 GTGAAAGTTGATCTCTCGAAAACAAAGCAAGGGCCTTATCTGCTAAGGAAACTTGATATC 1978
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1959 GTGAAAGTTGATCTCTCGAAAACAAAGCAAGGGCCTTATCTGCTTAGGAAACTTGATATC 2018
Query 1979 GATGGTTATGCCAGCAGACCTGATCAGTGGAAATCAAGACAAGAAGCTAAGCAATCAACA 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 GATGGTTATGCCAGCAGACCTGATCAGTGGAAATCAAGACAAGAAGCTAAGCAATCAACA 2078
Query 2039 TATAACGACTTTTGTTCTACATTTGGGTCCAACAAATCAAATTTTCCAAAGAACACATTT 2098
|||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2079 TATAACGAATTTTGCTCTGCATTTGGGTCCAACAAATCAAATTTTCCAAAGAACACCTTT 2138
Query 2099 GTCTCTGACACATCTGAGGATGCATATCAGGAAATAGAAGTAAAGAATACAAGGAAAGAG 2158
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2139 GTCTCTGACGCATCTGAGGATGCAGCTCAGGAAATAGAAGTAAAGAATACAAGGAAAGAG 2198
Query 2159 ATTGACCATCATCCTACCTCTGGGTTTAAGCGTCACCGAGAAGAACATGCAAAGGATAAG 2218
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 2199 ATTGACCATCATCCTACTTCCGGGTTTAAGCGTCACCGAGAAAAACATGCAAAGGATAAG 2258
Query 2219 GATGAACCTTTTGCAGGTGAAAAAAGGA-CAAAACAGAAGAAGAATAAAACTAGTGAAGC 2277
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 2259 GATGAACCTTTTGCAGGTGAAAAAAG-ATCGAAACAGAAGAAGAATAAAACTAGTGAAGC 2317
Query 2278 AACAGATAAACCAAAACTAGCTGGCAGCAAAAGACCTTTCCTTTCTGGCGAGATGACTGG 2337
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2318 AACAGATAAACCAAAACTAGCTGGCAGCAAAAGACCTTTCCTTTCTGGTGAGATGACTGG 2377
Query 2338 AAAGAATAGGCATTCAAATAAATTGAGAATCTGAAGGTTAGACTCCTTACTCT 2390
||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2378 AAAGAATCGGCATTCAAATAAAATGAGAATTTGAAGGTTAGACTCCTTACTCT 2430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118674088380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5