BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476362
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72330.3 | Symbols: ALAAT2 | alanine aminotransferase 2 | ch... 1910 0.0
AT1G17290.1 | Symbols: AlaAT1 | alanine aminotransferas | chr1:... 1666 0.0
> AT1G72330.3 | Symbols: ALAAT2 | alanine aminotransferase 2 |
chr1:27233475-27236789 FORWARD LENGTH=2042
Length=2042
Score = 1910 bits (1034), Expect = 0.0
Identities = 1157/1215 (95%), Gaps = 13/1215 (1%)
Strand=Plus/Plus
Query 738 GTTCATATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTGCCCAATT 797
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 829 GTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATT 888
Query 798 CCTCAGTATCCATTGTACTCTGCTTCAATTGCTCTTCATGGTGGATCTTTGGTTCCGTAC 857
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 889 CCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATGGTGGATCTTTGGTTCCGTAC 948
Query 858 TATCTTGATGAAGCAACCGGATGGGGACTGGAAATATCTGACCTTAAGAAGCAACTGGAG 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 949 TATCTTGATGAAGCAACAGGATGGGGACTGGAAATATCTGACCTTAAGAAGCAACTAGAG 1008
Query 918 GAAGCTAGGTCGAAGGGCATCGCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCA 977
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GAAGCTAGGTCCAAGGGCATCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCA 1068
Query 978 ACTGGGCAGGTTCTTGCTGAAGACAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGAG 1037
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1069 ACTGGGCAGGTTCTTGCGGAAGAAAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGAG 1128
Query 1038 GGTTTAGTTCTTTTAGCTGACGAGGTCTACCAAGAAAATGTTTACGTACCTGACAAAAAG 1097
||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1129 GGTTTGGTTCTTTTAGCTGATGAAGTCTACCAAGAAAATGTTTACGTCCCTGACAAAAAG 1188
Query 1098 TTCCATTCTTTCAAGAAAGTAGCTCGGTCTTTGGGCTATGGCGAAAAGGATATCTCGTTA 1157
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1189 TTCCATTCTTTCAAGAAAGTGGCTCGGTCTTTGGGCTATGGAGAAAAAGATATCTCGTTA 1248
Query 1158 GTCTCGTTCCAATCAGTTTCCAAAGGTTACTATGGAGAATGTGGAAAAAGAGGAGGTTAC 1217
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1249 GTCTCGTTCCAATCAGTCTCCAAAGGATATTATGGAGAATGTGGAAAAAGAGGAGGTTAC 1308
Query 1218 ATGGAGGTTACCGGATTCACTTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTG 1277
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 ATGGAGGTTACTGGATTCACTTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTG 1368
Query 1278 AATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAG 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 AATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAG 1428
Query 1338 CCTGGTGATGACTCATATGACTCATACATGGCAGAAAGAGATGGAATTCTCTCATCCATG 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 CCTGGTGATGACTCATATGACTCATACATGGCAGAAAGAGATGGAATTCTCTCATCCATG 1488
Query 1398 GCTAAACGTGCAAAGACTTTGGAAGACGGTCTCAACAGTTTAGAAGGTGTTACATGTAAC 1457
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1489 GCTAAACGTGCAAAGACTTTGGAAGACGCTCTCAACAGTTTAGAAGGTGTTACATGTAAC 1548
Query 1458 AGAGCGGAAGGAGCGATGTATCTCTTCCCGCGAATTAGCCTTCCTCAAAAGGCGATTGAA 1517
||||| |||||||| |||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 1549 AGAGCCGAAGGAGCAATGTATCTCTTCCCGCGAATTAACCTTCCTCAAAAGGCTATCGAA 1608
Query 1518 GCTGCTGAGGCCGAAAAAACTGCGCCAGATGCTTTCTACTGCAAACGCCTTCTCAATGCT 1577
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1609 GCTGCTGAGGCTGAAAAAACTGCACCAGATGCGTTCTACTGCAAACGCCTTCTCAATGCT 1668
Query 1578 ACTGGTGTAGTTGTAGTCCCTGGTTCTGGCTTTGGACAGGTTCCTGGAACATGGCACTTT 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ACTGGTGTAGTTGTAGTCCCTGGTTCTGGCTTTGGACAGGTTCCTGGAACATGGCACTTT 1728
Query 1638 AGATGCACAATACTTCCACAAGAAGACAAGATTCCGGCGATAGTGAATCGTCTCACAGAG 1697
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1729 AGATGCACAATACTTCCACAAGAAGACAAGATTCCAGCGATAGTGAATCGTCTGACAGAG 1788
Query 1698 TTCCACAAGAGCTTCATGGACGAGTTCCGCGACTAAAAA-ACCTGACCATGATGATGAAC 1756
|||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct 1789 TTCCACAAGAGCTTCATGGACGAGTTCCGCAACTAAAAGGACCTGACCATGAAGATGAAC 1848
Query 1757 TTAAAGACC-TTTTGA-GAAAAGTGTGATCAGTTTGAGTTATTTaaaaaaaa-aaGAAGG 1813
||||||||| |||||| |||||||||||||||||||||||||| |||||||| || ||
Sbjct 1849 TTAAAGACCCTTTTGAAGAAAAGTGTGATCAGTTTGAGTTATT-AAAAAAAAGAA-AA-- 1904
Query 1814 CTTATGTTTTGAATTTGATCAGGCAATTGTGGTCAGCTAATTTAATTTTAGAATATTTTG 1873
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1905 CTTGTGTTTTGAATTTGATCAGGCAATTGTGATCAGCTAATTTAATTTTAGAATATTTTG 1964
Query 1874 TACT-CCATGGCATGCCAATTTAAGATATGAAGATATGAAAATTGAGTAAATTTATTGGG 1932
|||| |||| |||| || | | | |||||||||||||||||| |||||||||||||||
Sbjct 1965 TACTTCCATTCCATGGCA-TGTCA--TATGAAGATATGAAAATT-AGTAAATTTATTGGG 2020
Query 1933 CTTTTTAATGGGCCT 1947
||| | |||||||||
Sbjct 2021 CTTATAAATGGGCCT 2035
Score = 1109 bits (600), Expect = 0.0
Identities = 713/763 (93%), Gaps = 26/763 (3%)
Strand=Plus/Plus
Query 1 ATTTTTGAGCGTGGAGGACAAGGCAAAATTCGGTGTTTGC-AGGCACTGGATATTGGGAC 59
|||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 31 ATTTCTGAGCGTGGAGGACAAGGCAAAATTCGGTG--TGCAAGGCACTGGATATTGGGAC 88
Query 60 CCTTGTTTCCTCGTGAGAGAATTTTCAATCTTGGGGCTTGAAGAGCACGTTCCTACCATA 119
|||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||
Sbjct 89 CCTTGTTTCCTCGTGAGAGAATTTTCAATCCTAGGGCTTAAAGAGCACGTTCCTAGTATA 148
Query 120 AA---G-----CAGATGCGGAGATTCTTGATTAACCAAGCTAAAGGTCTCGTCGACCATT 171
|| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AAGCTGATTCACAGATGCGGAGATTCTTGATTAACCAAGCTAAAGGTCTCGTCGACCATT 208
Query 172 CTCGTCGTCAACAT---CACAAAAGTCCAAGCTttctctctcctcaatctcgt---c--- 222
|||||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 209 CTCGTCGTCAACATCACCACAAAAGTCCAAGCTTTCTCTCTCCTCAACCTCGTCCCCTTG 268
Query 223 c-tc-t-t-gt-ct-ctctgtctcgtttcttctcttctacttcggagatgtctgcttctg 276
| || | | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CTTCTTCTCCTCCTGCTCTGTCTCGTTTCTTCTCTTCTACTTCGGAGATGTCTGCTTCTG 328
Query 277 attccacttcttctcttcCCGTTACTCTTGACTCCATCAATCCCAAGGTTCTGAAATGTG 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ATTCCACTTCTTCTCTTCCCGTTACTCTTGACTCCATCAATCCCAAGGTTCTGAAATGTG 388
Query 337 AGTATGCTGTTCGTGGAAAAATTGTCAACATTGCTCAGAAGTTGCAAGAAGACTTGAAGT 396
||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 389 AGTATGCTGTTCGAGGAGAAATTGTCAACATTGCTCAGAAGTTACAAGAAGACTTGAAGA 448
Query 397 CTAATAAGGATGCTTATCCCTTTGATGAGATAATCTATTGCAACATTGGGAATCCTCAAT 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CTAATAAGGATGCTTATCCCTTTGATGAGATAATCTATTGCAACATTGGGAATCCTCAAT 508
Query 457 CTCTTGGTCAACTGCCTATAAGGTTCTTCCGAGAGGTTCTCGCATTGTGTGACCACGCAA 516
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 509 CTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAGGTTCTCGCATTGTGTGACCACGCAA 568
Query 517 GCCTTTTGGATGAGTCTGAAACACATGGTTTGTTCAGTACCGATTCAATTGACCGAGCAT 576
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 569 GTCTTTTGGATGAGTCTGAAACCCATGGTTTGTTCAGTACCGATTCAATTGACCGAGCAT 628
Query 577 GGAAGATTTTGGACCAAATTCCCGGAAGAGCAACTGGTGCTTACAGTCACAGCCAGGGTA 636
||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 629 GGAGGATTTTGGACCATATTCCCGGAAGAGCAACTGGGGCTTACAGTCATAGCCAGGGTA 688
Query 637 TCAAGGGATTACGTGATGTAATTGCAGCTGGAATCGAAGCACGTGATGGCTTCCCCGCTG 696
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 689 TCAAGGGTTTACGTGATGTAATTGCAGCTGGAATCGAAGCACGTGATGGTTTCCCTGCTG 748
Query 697 ATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGT 739
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 ATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGT 791
> AT1G17290.1 | Symbols: AlaAT1 | alanine aminotransferas | chr1:5922630-5926400
FORWARD LENGTH=2080
Length=2080
Score = 1666 bits (902), Expect = 0.0
Identities = 1307/1503 (87%), Gaps = 25/1503 (2%)
Strand=Plus/Plus
Query 244 tcttc-tcttctacttcggagatgtctgcttctgattccacttcttctcttcCCGTTACT 302
||||| |||||| |||| || |||||||||||||||||| |||| |||||||||||||||
Sbjct 283 TCTTCTTCTTCTTCTTCCGATATGTCTGCTTCTGATTCCTCTTCCTCTCTTCCCGTTACT 342
Query 303 CTTGACTCCATCAATCCCAAGGTTCTGAAATGTGAGTATGCTGTTCGTGGAAAAATTGTC 362
|||||| ||||||| ||||||||| | ||||||||||||||||| |||||| ||||||||
Sbjct 343 CTTGACACCATCAACCCCAAGGTTATCAAATGTGAGTATGCTGTCCGTGGAGAAATTGTC 402
Query 363 AACATTGCTCAGAAGTTGCAAGAAGACTTGAAGTCTAATAAGGATGCTTATCCCTTTGAT 422
|||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||||||||
Sbjct 403 AACATTGCTCAGAAATTGCAAGAAGATTTGAAGACTAACAAGGACGCTTATCCCTTTGAT 462
Query 423 GAGATAATCTATTGCAACATTGGGAATCCTCAATCTCTTGGTCAACTGCCTATAAGGTTC 482
||||| ||||| || || || ||||||||||||||||||||||||| |||||||| |||
Sbjct 463 GAGATTATCTACTGTAATATCGGGAATCCTCAATCTCTTGGTCAACAGCCTATAACATTC 522
Query 483 TTCCGAGAGGTTCTCGCATTGTGTGACC-ACGCAAG-CCTTTTGGATGAGTCTGAAACAC 540
||| |||||||||| || || ||| || || | || ||| ||||||||| || |||||
Sbjct 523 TTCAGAGAGGTTCTTGCTTTATGT-TCCTACAC-AGCCCTGTTGGATGAGAGTGCAACAC 580
Query 541 ATGGTTTGTTCAGTACCGATTCAATTGACCGAGCATGGAAGATTTTGGACCAAATTCCCG 600
| |||||||||||| | ||||| ||||| || || ||||||||| |||||||||||||||
Sbjct 581 ACGGTTTGTTCAGTTCTGATTCGATTGAGCGTGCTTGGAAGATTCTGGACCAAATTCCCG 640
Query 601 GAAGAGCAACTGGTGCTTACAGTCACAGCCAGGGTATCAAGGGATTACGTGATGTAATTG 660
| ||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 641 GGAGAGCGACTGGTGCTTACAGCCACAGCCAGGGTATCAAGGGGTTACGTGATGCAATTG 700
Query 661 CAGCTGGAATCGAAGCACGTGATGGCTTCCCCGCTGATCCAAATGATATTTTCTTGACTG 720
| | |||||||||||| |||||||| ||||| |||||||| |||||||| ||| |||| |
Sbjct 701 CTGATGGAATCGAAGCCCGTGATGGTTTCCCTGCTGATCCTAATGATATATTCATGACAG 760
Query 721 ATGGTGCAAGTCCAGCGGTTCATATGATGATGCAACTTCTCTTGAGC-TCAGAGAAAGAT 779
||||||||||||||| ||||||||||||||||||||||||| | | | ||||||||||||
Sbjct 761 ATGGTGCAAGTCCAGGGGTTCATATGATGATGCAACTTCTCAT-AACTTCAGAGAAAGAT 819
Query 780 GGTATTCTTTGCCCAATTCCTCAGTATCCATTGTACTCTGCTTCAATTGCTCTTCATGGT 839
|| || ||||| || ||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 820 GGAATCCTTTGTCCTATTCCTCAGTATCCATTGTACTCAGCTTCAATTGCCCTTCACGGT 879
Query 840 GGATCTTTGGTTCCGTACTATCTTGATGAAGCAACCGGATGGGGACTGGAAATATCTGAC 899
||| |||||||||| ||||| |||||||||||| | |||||||| || |||||||||||
Sbjct 880 GGAACTTTGGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAG 939
Query 900 CTTAAGAAGCAACTGGAGGAAGCTAGGTCGAAGGGCATCGCTGTAAGGGCCTTGGTTGTC 959
|| ||||| ||||| || || |||||||| ||||||||| |||| || || |||| ||||
Sbjct 940 CTGAAGAAACAACTTGAAGATGCTAGGTCAAAGGGCATCACTGTGAGAGCTTTGGCTGTC 999
Query 960 ATAAACCCCGGTAACCCAACTGGGCAGGTTCTTGCTGAAGACAACCAGCGTGACATTGTT 1019
|| ||||| || ||||| || |||||||||||| | ||||| |||||||||||| |||||
Sbjct 1000 ATTAACCCTGGAAACCCGACAGGGCAGGTTCTTTCGGAAGAAAACCAGCGTGACGTTGTT 1059
Query 1020 AATTTCTGCAAGCAAGAGGGTTTAGTTCTTTTAGCTGACGAGGTCTACCAAGAAAATGTT 1079
|| |||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 1060 AAGTTCTGCAAGCAAGAGGGTTTAGTTCTTTTAGCAGACGAGGTTTATCAAGAGAATGTC 1119
Query 1080 TACGTACCTGACAAAAAGTTCCATTCTTTCAAGAAAGTAGCTCGGTCTTTGGGCTATGGC 1139
|| || |||||||||||||||||||| |||||||||||||| || ||| ||||||| ||
Sbjct 1120 TATGTCCCTGACAAAAAGTTCCATTCCTTCAAGAAAGTAGCCCGCTCTATGGGCTACGGT 1179
Query 1140 GAAAAGGATATCT-CGTTAGTCTCGTTCCAATCAGTTTCCAAAGGTTACTATGGAGAATG 1198
|| |||||| | | | |||||||| |||||||| || |||||||| ||||||||||| ||
Sbjct 1180 GAGAAGGATCT-TGCCTTAGTCTCTTTCCAATCTGTCTCCAAAGGGTACTATGGAGAGTG 1238
Query 1199 TGGAAAAAGAGGAGGTTACATGGAGGTTACCGGATTCACTTCTGATGTAAGAGAACAGAT 1258
||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1239 TGGGAAAAGAGGTGGTTACATGGAGGTTACTGGATTCACTTCTGATGTAAGAGAGCAGAT 1298
Query 1259 ATACAAAATGGCTTCTGTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCT 1318
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1299 ATACAAAATGGCTTCTGTGAATCTTTGTTCCAACATCTCTGGTCAAATTCTTGCTAGCCT 1358
Query 1319 TGTCATGAGCCCACCCAAGCCTGGTGATGACTCATATGACTCATACATGGCAGA-AAGAG 1377
||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||| |
Sbjct 1359 CATCATGAGCCCACCCAAGCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAG-G 1417
Query 1378 ATGGAATTCTCTCATCCATGGCTAA-ACGTGCAAAGACT-TTGGAAGACGG-TCTCAACA 1434
|||||||||||||||| |||| || ||||||||||||| ||| |||| || ||| ||||
Sbjct 1418 ATGGAATTCTCTCATCTTTGGC-AAGACGTGCAAAGACTCTTG-AAGA-GGCTCTGAACA 1474
Query 1435 -GTTTAGAAGGTGTTACATGTAACAGAGCGGAAGGAGCGATGTATCTCTTCCCGCGAATT 1493
| | ||| || |||||||| || ||||| |||||||| |||||||| ||||| | ||
Sbjct 1475 AGCT-AGAGGGAGTTACATGCAATAGAGCAGAAGGAGCTATGTATCTATTCCCTTGCCTT 1533
Query 1494 -AGCCTTCCTCAAAAGGCGATTGAAGCTGCTGAGGCCGAAAAAACTGCGCCAGATGCTTT 1552
| |||||| |||||||| |||| |||||||||||| ||||| || || ||||| |||
Sbjct 1534 CA-CCTTCCACAAAAGGCAATTGCAGCTGCTGAGGCGGAAAAGACAGCACCAGACAATTT 1592
Query 1553 CTACTGCAAACGCCTTCTCAATGCTACTGGTGTAGTTGTAGTCCCTGGTTCTGGCTTTGG 1612
|||||||||||||||||| || |||||||| |||| || |||||||||||||||||| |
Sbjct 1593 CTACTGCAAACGCCTTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAG 1652
Query 1613 ACAGGTTCCTGGAACATGGCACTTT-AGATGCACAATACTTCCACAAGAAGACAAGATTC 1671
|||||| |||||||||||||| ||| || ||||| |||||||| ||||| || |||||||
Sbjct 1653 ACAGGTACCTGGAACATGGCA-TTTCAGGTGCACTATACTTCCCCAAGAGGATAAGATTC 1711
Query 1672 CGGCGATAGT-GAATCGTCTCACAGAGTTCCACAAGAGCTTCATGGACGAGTTCCGCGAC 1730
| ||||| || || |||||| || | ||||||| ||||||||||||||||||||||||||
Sbjct 1712 CAGCGATTGTTGA-TCGTCTAACTGCGTTCCACCAGAGCTTCATGGACGAGTTCCGCGAC 1770
Query 1731 TAA 1733
|||
Sbjct 1771 TAA 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96435246945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5