BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476373
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72416.3 | Symbols: | Chaperone DnaJ-domain superfamily pro... 839 0.0
> AT1G72416.3 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:27258856-27260291 REVERSE LENGTH=1057
Length=1057
Score = 839 bits (454), Expect = 0.0
Identities = 624/699 (89%), Gaps = 39/699 (6%)
Strand=Plus/Plus
Query 1 GCACGATACCCAAAATATCAAACtcttcttc-ttt---aac-c-t-tc-tcttctcttct 52
||||||||||||||||||||||||||||||| ||| | | | || |||||||||||
Sbjct 1 GCACGATACCCAAAATATCAAACTCTTCTTCTTTTCCCTTCTCTTCTCTTCTTCTCTTCT 60
Query 53 tcCACGTTTACGCGTATCCACA-CATCTATACATTCATTAATCTCGATCTTTCTTTATCT 111
||||||||||||||||| |||| | ||||||||| ||||||||| |||| ||||||||||
Sbjct 61 TCCACGTTTACGCGTATACACATC-TCTATACATACATTAATCTTGATCCTTCTTTATCT 119
Query 112 CTTTGCTTCTAATAAACTCCAACGAAGTGCTCTTGCTTTTTCTCATTCTTATATATCATC 171
||||||||| |||||||||||| ||| |||||| |||||||||||||||| |||||||
Sbjct 120 CTTTGCTTCCAATAAACTCCAAAGAACAGCTCTTTCTTTTTCTCATTCTTA-CTATCATC 178
Query 172 ATCAATGGAGAAG-GAAGACTTGTACGCTGT-TATGGATTTGAACAATGAATGTACACAA 229
|| ||||||| || ||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 179 ATTAATGGAG-AGAGAAGACTTGTACGCTGTCT-TGGATTTGAACAACGAATGTACACAA 236
Query 230 AGAGATCTCAAACTTTCTTACAAGAACCTTGCTCTGAAATGGCATCCAGATCGGTTTCTT 289
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 237 GGAGATCTCAGACTTTCTTACAAGAACCTTGTTCTGAAATGGCATCCAGATCGGTTTCTT 296
Query 290 GAAGATATTGAGAAAGATGAAGCCAAGATGAAATTTCAGTCCATTCAACGAGCCTATTCT 349
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGAAATAGAGAAAGATGAAGCTAAGATGAAATTTCAGTCCATTCAACGAGCCTATTCT 356
Query 350 GTTTTGTCGGATTCCAACAAGAGGCTGTTGTATGACGTCGGTGCTTATGACAGTGATGAC 409
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 357 GTTTTGTCGGATTCCAACAAGAGGCTTTTGTATGACGTCGGTGCTTATGATAGTGATGAC 416
Query 410 GACGAAACTGGAATGGCTGATTTCATAAATGAGATGGTGACGCTGATGGCTCAAACTCAA 469
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 GACGAAACTGGAATGGCTGATTTCATAAATGAGATGGTGACGCTTATGGCTCAAACTCAA 476
Query 470 TCTACGGGTGACGAAAGTTTAGAGGAATTTGAAGAGTTGTTTGAAGAATTATTGAAGGAT 529
|||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 477 TCTACGGGGGACGAAAGTTTAGAGGAATTTGAAGAGTTATTTCAAGAATTGTTGAAGGAT 536
Query 530 GATGTGAATCAATTCAAAACTCGTTCGTATTCG-C--CG-GTT---AAT---G-G-CACG 577
|||||||||||||||||||||||||| | |||| | | ||| ||| | | ||||
Sbjct 537 GATGTGAATCAATTCAAAACTCGTTCATCTTCGTCTTCATGTTCGCAATTTAGTGGCACG 596
Query 578 TCGG-T--G--C-ATCGCGATGATTTATCAAAT------GATATTCCGAATAAAATTAAC 625
||| | | | || ||||||||||||||||| |||||||| || |||||||||
Sbjct 597 TCGACTTTGGTCCATTGCGATGATTTATCAAATTCAAATGATATTCCCAACAAAATTAAC 656
Query 626 GCTCATGACAACTGTTGTTGTATAAGTTCTAGTAAGGTA 664
| ||||||||||| |||||||||||||||||||||||||
Sbjct 657 GGTCATGACAACTATTGTTGTATAAGTTCTAGTAAGGTA 695
Score = 106 bits (57), Expect = 3e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 659 AAGGTAGGTGGTCCATCGACGAGATTCCAAGTTGGCAATAGAAGATCTAAGAAGTAGAGC 718
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 862 AAGGTAGGTGGTCCATCGACGAGATTCCAAGCTGGCAATAGAAGATCTAAGAAGTAGAGC 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5