BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476379
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72450.1 | Symbols: JAZ6, TIFY11B | jasmonate-zim-domain pro... 1109 0.0
> AT1G72450.1 | Symbols: JAZ6, TIFY11B | jasmonate-zim-domain protein
6 | chr1:27274065-27276317 REVERSE LENGTH=1262
Length=1262
Score = 1109 bits (600), Expect = 0.0
Identities = 907/1044 (87%), Gaps = 65/1044 (6%)
Strand=Plus/Plus
Query 154 GTCGACGGGACAAGGGCCGGAGAAGTCAAATTTTTCTCAGAGATGTAGTTTGCTCAGCCG 213
||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 184 GTCAACGGGACAAGCGCCGGAGAAGTCCAATTTTTCTCAGAGATGTAGTCTGCTCAGCCG 243
Query 214 GTACTTGAAGGAGAAGGGAAGTTTTGGGAATATTACTATGGGGTTGGCTCGAATATCCGA 273
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 244 GTACTTGAAGGAGAAGGGAAGTTTTGGGAATATTAATATGGGGTTGGCTCGAAAATCCGA 303
Query 274 TCTTGAGCTCGCCGGAAAATTCGATCTCAAAGGTCAACAAAATGTGATTGAGAAGGCAGA 333
|||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 304 TCTTGAACTCGCCGGAAAATTCGATCTCAAAGGACAACAAAATGTGATTAAGAAGGTAGA 363
Query 334 -AAC-AAGACCCTTTGAAGTGATTCAAAAGCT--TTCCG-AGCTTTCCGTTTGTGAGGCC 388
| | ||| | | | | | ||| ||| | ||| | || |||| || ||||||||
Sbjct 364 GACCTCAGAAAC-TAG-ACCG-TTC--AAGTTGATTCAGAAGTTTTCTATTGGTGAGGCC 418
Query 389 TCTACTTTTTCTGGAA-ACAAAGCCATATATGTTGATCTCAGTGAACCGGAAAAAGTTGT 447
||||||| | | ||| |||||||||||||| |||||||||||||||||| |||||| |
Sbjct 419 TCTACTTCTAC-CGAAGACAAAGCCATATATATTGATCTCAGTGAACCGGCAAAAGTAGC 477
Query 448 AGCAAAGCCTGGAAATTCACAGTTGACCATATTCTTTGGAGGAAAAGTGATGGTTTTCAA 507
| | || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 ACCGGAGTCTGGAAATTCACAGTTGACCATATTCTTTGGAGGAAAAGTTATGGTTTTCAA 537
Query 508 TGAGTTTCCTGAGGACAAAGCAAAGGAAATAATGGAAGTAGCAAAAGAAGCGAATCATGT 567
||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 538 CGAGTTTCCTGAAGACAAAGCTAAGGAGATAATGGAAGTAGCTAAAGAAGCGAATCATGT 597
Query 568 TGCTGTTGATTCGAATAACAACACTCAGAGTCACATGAATCTCGACATGAACAACAAAAG 627
|||||||||||| ||| |||| |||||||||||||||||| || |||||||
Sbjct 598 TGCTGTTGATTC---TAAGAACAGTCAGAGTCACATGAATCT-----TG----ACAAAAG 645
Query 628 CAACGTGGTGATTCCTGATCTGAACGAGCCAACAAGTTCGGGGAACAACGAAGATCAAGA 687
||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct 646 CAACGTGGTGATTCCCGATCTTAACGAGCCAACGAGTTCCGGGAACAATGAAGATCAAGA 705
Query 688 AACAGGGCAGCAACATCAGGTTGTGGAACGCATTGCAAGAAGATCTTCTCTTCATCGATT 747
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 706 AACTGGGCAGCAACATCAGGTTGTGGAACGCATTGCAAGAAGAGCTTCTCTTCATCGATT 765
Query 748 CTTTGCAAAAAGAAAAGACAGGGCTGTGGCTAGAGCTCCATATCAAGTGAACCAAAACGG 807
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 766 CTTTGCTAAACGAAAAGACAGGGCTGTGGCTAGAGCTCCATATCAAGTGAACCAACACGG 825
Query 808 TGGTCATCTTCCTCCCAAGCCAGAGATGGGTACTCCATCGATAAAGTCAGGCCAATCCTC 867
| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 826 TAGTCATCTTCCTCCCAAGCCAGAGATGGTTGCTCCATCGATAAAGTCAGGCCAATCGTC 885
Query 868 GCAACACTTTGCAACTCCTCCAAAACCAAAGGCACATAACCATATGCCAATGGAAGTGGA 927
||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 886 GCAACACATTGCAACTCCTCCAAAACCAAAGGCCCATAACCATATGCCGATGGAGGTGGA 945
Query 928 CAAGAAAGAAGGACAGTCTTCCAAAAATCTTGAACTCAAGCTTTAGGGC--ATA---T-C 981
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| | |
Sbjct 946 CAAGAAAGAAGGACAATCTTCCAAAAACCTTGAACTCAAGCTTTAGGGCGTATAAAATGC 1005
Query 982 ACGA--G--TTCACATTTCTAGTTT-CACTTATTTAGGATTTGAAGCCAAATACCCTTTT 1036
|||| | ||||| |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1006 ACGATCGAGTTCACGTTTCTAGTTTTCACTTATTTAGGATTTGAACCCAAATACCCTTTT 1065
Query 1037 A------CTT---TT------GACCAATTTAAGTGATTCATAGT---GTATTACGTAGCT 1078
| ||| || ||||||||||||| ||| ||||| |||||||||||||
Sbjct 1066 ATATTTTCTTCCATTACTTTTGACCAATTTAAGTTATTTATAGTACTGTATTACGTAGCT 1125
Query 1079 AGTATT-AT-TT-CTACACA--CATATTTTGATACTTGTTTTTTACATCTTGTTTAGATC 1133
|||||| || || | | ||| ||||||||||||||||||||||| || | |||| ||
Sbjct 1126 AGTATTTATATTTCAAAACATACATATTTTGATACTTGTTTTTTAGAT-TC-TTTA-AT- 1181
Query 1134 CTTTAAAATTGTCATTTAGATTAC 1157
| ||||||||||| | ||||||
Sbjct 1182 -T--AAAATTGTCATCTGGATTAC 1202
Score = 176 bits (95), Expect = 4e-43
Identities = 127/141 (90%), Gaps = 8/141 (6%)
Strand=Plus/Plus
Query 1 ATTTATTCGGGAGAGGTTAAATAAAAGCCTCAGAAACTTATTGGCTAGAATTGGTTATTT 60
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATTTATTCGGGAGAGG-T---TAAAAGCCACAGAAACTTATTGGCTAGAATTGGTTATTT 56
Query 61 ATAACAACAACATATGAGCAAAAAAGCTCAAAACATCTATATACCCTTTGTAATTCTCGA 120
|||||||||||| ||||||||||| |||||||||||||| |||| ||||| ||| |||||
Sbjct 57 ATAACAACAACACATGAGCAAAAA-GCTCAAAACATCTACATACTCTTTGGAATCCTCGA 115
Query 121 TTTTT---ACGTGTAAAGAAG 138
||||| |||||||||||||
Sbjct 116 TTTTTTGTACGTGTAAAGAAG 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5