BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476382
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1450 0.0
AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 316 3e-85
> AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G17400.1);
Has 75 Blast hits to 75 proteins in 21 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses
- 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27288900-27291042
REVERSE LENGTH=1619
Length=1619
Score = 1450 bits (785), Expect = 0.0
Identities = 1037/1154 (90%), Gaps = 35/1154 (3%)
Strand=Plus/Plus
Query 143 ttCTTCTTGGTCATTAAGACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTACATGGGA 202
|||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 291 TTCTTCCGGGTCACTAAGACATGAAGTTTTTCGGGTGGATGCAGAACAAGCTACATGGGA 350
Query 203 AACAAGGGATTAATACTCATAGACCAAGCATATCCTCTGTTTCTTCTCATCAACCGAGAG 262
|||||| || | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 351 AACAAGAGA-T--TACTCATAGACCAAGCATATCCTCTGCTTCTTCTCATCATCCGAGAG 407
Query 263 AGGAGTTTAGCGATTGGCCTCATGGACTACTCGCGATTGGAACGTTCGGTAACAAAGCGC 322
||||||||| |||||||||||| ||| ||||||||||||| || |||||||||||| ||
Sbjct 408 AGGAGTTTAACGATTGGCCTCACGGATTACTCGCGATTGGTACATTCGGTAACAAAAAGC 467
Query 323 AGACATCACAAAAAGTTGATCAAGAAGAGATTCAAGAAGAGACGGTGTCT-A---A-A-G 376
||||| |||||| | |||||||||||| ||||||||||||||| |||||| | | | |
Sbjct 468 AGACACCACAAACACTTGATCAAGAAGTGATTCAAGAAGAGACAGTGTCTAACTTACACG 527
Query 377 TGGAA-G--GTCAAGCACAAGATAGAGATCAAGAACTTTCTTCAACCGATGATCTAGAAG 433
||||| | ||||||||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 528 TGGAAGGTCGTCAAGCACAAGATACAGATCAAGAGCTTTCTTCCTCCGATGATCTAGAAG 587
Query 434 AAGATTTCACTCCAGAGGAAGTTGGGAAACTGCAGAAGGAGCTGACGAAACTCTTGACGA 493
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 588 AAGATTTCACTCCCGAAGAAGTTGGGAAACTACAGAAGGAGCTGACGAAACTCTTGACGA 647
Query 494 GAAGGAGCAAGAAGAGGAAGTCTGATGTGAATCGAGAATTGGCGAATCTTCCTTTGGATA 553
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 648 GAAGGAGTAAGAAAAGGAAGTCTGATGTGAATCGAGAATTAGCGAATCTTCCTTTGGATA 707
Query 554 GATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGCAACGCGCTTTGTG 613
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 708 GATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGTAACGCGCTTTGTG 767
Query 614 ATGAGAAGGAAGAAGACATTGAGCGTACAATCAGTGTTATCTTAGGGAGATGCAAGGCGA 673
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 768 ATGAGAAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTA 827
Query 674 TTTCGACAGAGAGCAAGAACAAGACGAAGAAGAGTAAGAGAGACTTGAGCAAAACCTCTG 733
|||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 828 TTTCTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTG 887
Query 734 TTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAGGGTTTCTCTCCAGTTCCTAGCC 793
||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |||
Sbjct 888 TTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAAGGTTTTTCTCCCGTTCCTCGCC 947
Query 794 CTAGCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTAC 853
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTAC 1007
Query 854 ACAAGAAAATAAACACTCAAACTTCTTTAAAGCAAACATCAACGAAAAAATACTTGCAAG 913
|||||||| | ||||||||| |||| | |||||||||||| || ||||||||||||||||
Sbjct 1008 ACAAGAAAGTTAACACTCAAGCTTCATCAAAGCAAACATCGACAAAAAAATACTTGCAAG 1067
Query 914 ACAAGCAACAACTTTCTTTGAAGAATGAGGAAGAAGAAGAAAGAAGTAGTAGCGATGGGG 973
|||||||||| || || |||||||| ||||||||||||| | |||| |||| ||||||||
Sbjct 1068 ACAAGCAACAGCTCTCGTTGAAGAACGAGGAAGAAGAAGGACGAAGCAGTAACGATGGGG 1127
Query 974 GTAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGAATATTTGATTCAC 1033
| ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 1128 GGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGAATATATGGTCCAC 1187
Query 1034 TGTTCCCTTTTCATGTTCTTTCAAGAAAGTACAGATAGAGAATCTTCAATGATATCGATC 1093
| |||| ||||||||||||||||||||| ||||||||||||||||||| | || |||
Sbjct 1188 TTTTCCTTTTTCATGTTCTTTCAAGAAAATACAGATAGAGAATCTTCAC--A-AT--ATC 1242
Query 1094 AAGACAAAGAAAATT-CAAAAC--ATTCCAAAAGTTTTTGGGTCTCTCT--CTATCTGCA 1148
||||||| || | | || |||||||||||||||||||| |||||||||
Sbjct 1243 AAGACAATTTCTTTTTCTCT-CTGATG--AAAAGTTTTTGGGTCTCTCTATCTATCTGCA 1299
Query 1149 GAGAGCCCATGAGTCCCtttttttGCATGGTTGGGTCCATAAAACCTAAACATGTTTTGG 1208
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1300 GAGAGCCCATGAGTCCCTTTTTTTGCATGGTTGGGTCCATAAAACCAAAACATGTTTTGG 1359
Query 1209 GAACTAAAACATCAGATA--GTACATGAGATATTTGTATGCGTA--T----GTGTGTATA 1260
|||||||| ||||||| | ||||||||||||| | ||||| || | |||||||||
Sbjct 1360 GAACTAAA-CATCAGACATCGTACATGAGATATGTATATGCATACATACATGTGTGTATA 1418
Query 1261 TTATAAAGATAGAT 1274
| |||||||||||
Sbjct 1419 TG-TAAAGATAGAT 1431
Score = 110 bits (59), Expect = 5e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 1 TCTCTTTCGAAGAAGTGAATCTGGACGAAGAACTAAGGCCGTCA-TTTCGGAACTTGAAC 59
||| ||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||
Sbjct 97 TCTTTTTCGAAGAAGTGAATCTGGACGAAGAACTAAGGCCGCCAATTTTGGAATTTGAAC 156
Query 60 CATCAAATTCATCAA 74
|||||||||||||||
Sbjct 157 CATCAAATTCATCAA 171
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1273 ATGTAGTTGTGTATTTTCAGGTGGATAACCTTTGGTTTATAGAA 1316
|||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1448 ATGTAGTTTTGTATTTTCAGGTGGATAACCTTTGGTTTCTAGAA 1491
> AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:5960481-5962481 REVERSE LENGTH=1477
Length=1477
Score = 316 bits (171), Expect = 3e-85
Identities = 490/633 (77%), Gaps = 66/633 (10%)
Strand=Plus/Plus
Query 436 GATTTCACTCCAGAGGAAGTTGGGAAA-CTGCAGAAGGAGCTGACGAAACTCTTGACGAG 494
||||||||||| || || ||| ||||| ||||||| ||| ||| ||| |||||| |
Sbjct 510 GATTTCACTCCTGAAGAGGTT-GGAAAGTTGCAGAAAGAGTTGATGAAGCTCTTGTC--- 565
Query 495 AAGGAGC-AAGAAGAGGAAGTCTGATGTGAATCGAGA-AT--TGGCGAATCTTCCTTTGG 550
|| || | ||||| |||||||||||||||||| |||| | || ||||||||||| |
Sbjct 566 AA-GAACTAAGAAAAGGAAGTCTGATGTGAATAGAGAGCTCATGAAAAATCTTCCTTTAG 624
Query 551 ATAGATTCTTGAATTGTCCTTCGAGTCTT-GAGGTCGATAGAAGAATCAGCAA----C-- 603
||||||||||||| ||||| |||||| || ||||| ||||| |||||||||| |
Sbjct 625 ATAGATTCTTGAACTGTCCATCGAGT-TTAGAGGTGGATAGGCGAATCAGCAATGCGCTT 683
Query 604 -GCGCT-TTGT-GA----T-----GAG---AAGGAAGAAGACATTGAGCGTACAATCAGT 648
||||| |||| || | ||| ||||| ||||| || ||||| || || |
Sbjct 684 AGCGCTGTTGTGGATTCGTCAGAGGAGAATAAGGAGGAAGATATGGAGCGAACGATTAAC 743
Query 649 GTTA-TCTTAGGGAGATGCAAGGCGATTTCGACAGAGAGCAAGAACAAGACGAAGAAGAG 707
|||| || |||| |||||||| | ||| || | |||||| ||||| | || ||| | ||
Sbjct 744 GTTATTC-TAGGTAGATGCAAAGAGATATCAATAGAGAGTAAGAA-TA-AC-AAG-A-AG 797
Query 708 TAAGAGAGACTTGAGCAA-AACCTCTGTTTC-TCATCTTCTCAAGAAGATGTTTGTCTGT 765
||||||||| | ||||| || |||||| || | ||||| |||||||||| ||||||||
Sbjct 798 -AAGAGAGACATAAGCAAGAA-CTCTGTCTCAT-ATCTTTTCAAGAAGATTTTTGTCTGC 854
Query 766 ACAGA-GGGTTTCTCTCCAGTTCCTAGCCCTAGCTTGAGAGACACGTTTCAAGAAACAAG 824
|||| ||| || ||| ||| || ||||||||||||||||||||| |||||||| ||||
Sbjct 855 GCAGATGGGATT-TCTACAGCCCCAAGCCCTAGCTTGAGAGACACGCTTCAAGAATCAAG 913
Query 825 AATGGAGAAGTTGCTG-AGAATGATGCTACACAAGAAAATAAACACTCAA-ACTTCTTTA 882
||||||||||||| || || |||||||| || ||||| || || ||||| || || |
Sbjct 914 AATGGAGAAGTTGTTGAAG-ATGATGCTCCATAAGAAGATTAATGCTCAAGCCTCCTCGA 972
Query 883 AAGCAAACATCA---ACGA-AAA-A-ATACTTGCAAGACAAGCAACAACTTTCTTTGAAG 936
|| | ||||||| || | ||| | |||||||||||||||| |||| || || |||||
Sbjct 973 AA-CCAACATCATTGACAACAAAGAGATACTTGCAAGACAAGAAACAGCTCTCACTGAAG 1031
Query 937 AATGAGGAAGAAG--A--A--G--A-AAGAAGTAGTAGCGATGGGGGTAAATGGGTCAAA 987
| ||||||||||| | | | | |||||||||||||||||| |||||||||||||
Sbjct 1032 AGTGAGGAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGCGATGGATATAAATGGGTCAAA 1091
Query 988 ACAGATTCTGATTTCATTGTTCTTGAGATCTGA 1020
||||||||||||||||| ||||| ||||| |||
Sbjct 1092 ACAGATTCTGATTTCATAGTTCTCGAGATATGA 1124
Score = 65.8 bits (35), Expect = 1e-09
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 161 ACATGAAGTTCTTCGGGTGGATGCAGAACAAGCT-ACATGGG 201
|||||||||||||||||||||||||||||||||| | |||||
Sbjct 235 ACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTA-ATGGG 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5