BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476382 Length=1316 Score E Sequences producing significant alignments: (Bits) Value AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1450 0.0 AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 316 3e-85 > AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27288900-27291042 REVERSE LENGTH=1619 Length=1619 Score = 1450 bits (785), Expect = 0.0 Identities = 1037/1154 (90%), Gaps = 35/1154 (3%) Strand=Plus/Plus Query 143 ttCTTCTTGGTCATTAAGACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTACATGGGA 202 |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 291 TTCTTCCGGGTCACTAAGACATGAAGTTTTTCGGGTGGATGCAGAACAAGCTACATGGGA 350 Query 203 AACAAGGGATTAATACTCATAGACCAAGCATATCCTCTGTTTCTTCTCATCAACCGAGAG 262 |||||| || | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 351 AACAAGAGA-T--TACTCATAGACCAAGCATATCCTCTGCTTCTTCTCATCATCCGAGAG 407 Query 263 AGGAGTTTAGCGATTGGCCTCATGGACTACTCGCGATTGGAACGTTCGGTAACAAAGCGC 322 ||||||||| |||||||||||| ||| ||||||||||||| || |||||||||||| || Sbjct 408 AGGAGTTTAACGATTGGCCTCACGGATTACTCGCGATTGGTACATTCGGTAACAAAAAGC 467 Query 323 AGACATCACAAAAAGTTGATCAAGAAGAGATTCAAGAAGAGACGGTGTCT-A---A-A-G 376 ||||| |||||| | |||||||||||| ||||||||||||||| |||||| | | | | Sbjct 468 AGACACCACAAACACTTGATCAAGAAGTGATTCAAGAAGAGACAGTGTCTAACTTACACG 527 Query 377 TGGAA-G--GTCAAGCACAAGATAGAGATCAAGAACTTTCTTCAACCGATGATCTAGAAG 433 ||||| | ||||||||||||||| ||||||||| |||||||| ||||||||||||||| Sbjct 528 TGGAAGGTCGTCAAGCACAAGATACAGATCAAGAGCTTTCTTCCTCCGATGATCTAGAAG 587 Query 434 AAGATTTCACTCCAGAGGAAGTTGGGAAACTGCAGAAGGAGCTGACGAAACTCTTGACGA 493 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 588 AAGATTTCACTCCCGAAGAAGTTGGGAAACTACAGAAGGAGCTGACGAAACTCTTGACGA 647 Query 494 GAAGGAGCAAGAAGAGGAAGTCTGATGTGAATCGAGAATTGGCGAATCTTCCTTTGGATA 553 ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 648 GAAGGAGTAAGAAAAGGAAGTCTGATGTGAATCGAGAATTAGCGAATCTTCCTTTGGATA 707 Query 554 GATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGCAACGCGCTTTGTG 613 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 708 GATTCTTGAATTGTCCTTCGAGTCTTGAGGTCGATAGAAGAATCAGTAACGCGCTTTGTG 767 Query 614 ATGAGAAGGAAGAAGACATTGAGCGTACAATCAGTGTTATCTTAGGGAGATGCAAGGCGA 673 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || | Sbjct 768 ATGAGAAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTA 827 Query 674 TTTCGACAGAGAGCAAGAACAAGACGAAGAAGAGTAAGAGAGACTTGAGCAAAACCTCTG 733 |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 828 TTTCTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTG 887 Query 734 TTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAGGGTTTCTCTCCAGTTCCTAGCC 793 ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||| Sbjct 888 TTTCTCATCTTCTCAAGAAGATGTTTGTCTGTACAGAAGGTTTTTCTCCCGTTCCTCGCC 947 Query 794 CTAGCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTAC 853 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 CTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTGAGAATGATGCTAC 1007 Query 854 ACAAGAAAATAAACACTCAAACTTCTTTAAAGCAAACATCAACGAAAAAATACTTGCAAG 913 |||||||| | ||||||||| |||| | |||||||||||| || |||||||||||||||| Sbjct 1008 ACAAGAAAGTTAACACTCAAGCTTCATCAAAGCAAACATCGACAAAAAAATACTTGCAAG 1067 Query 914 ACAAGCAACAACTTTCTTTGAAGAATGAGGAAGAAGAAGAAAGAAGTAGTAGCGATGGGG 973 |||||||||| || || |||||||| ||||||||||||| | |||| |||| |||||||| Sbjct 1068 ACAAGCAACAGCTCTCGTTGAAGAACGAGGAAGAAGAAGGACGAAGCAGTAACGATGGGG 1127 Query 974 GTAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGAATATTTGATTCAC 1033 | ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct 1128 GGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGAGATCTGAATATATGGTCCAC 1187 Query 1034 TGTTCCCTTTTCATGTTCTTTCAAGAAAGTACAGATAGAGAATCTTCAATGATATCGATC 1093 | |||| ||||||||||||||||||||| ||||||||||||||||||| | || ||| Sbjct 1188 TTTTCCTTTTTCATGTTCTTTCAAGAAAATACAGATAGAGAATCTTCAC--A-AT--ATC 1242 Query 1094 AAGACAAAGAAAATT-CAAAAC--ATTCCAAAAGTTTTTGGGTCTCTCT--CTATCTGCA 1148 ||||||| || | | || |||||||||||||||||||| ||||||||| Sbjct 1243 AAGACAATTTCTTTTTCTCT-CTGATG--AAAAGTTTTTGGGTCTCTCTATCTATCTGCA 1299 Query 1149 GAGAGCCCATGAGTCCCtttttttGCATGGTTGGGTCCATAAAACCTAAACATGTTTTGG 1208 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1300 GAGAGCCCATGAGTCCCTTTTTTTGCATGGTTGGGTCCATAAAACCAAAACATGTTTTGG 1359 Query 1209 GAACTAAAACATCAGATA--GTACATGAGATATTTGTATGCGTA--T----GTGTGTATA 1260 |||||||| ||||||| | ||||||||||||| | ||||| || | ||||||||| Sbjct 1360 GAACTAAA-CATCAGACATCGTACATGAGATATGTATATGCATACATACATGTGTGTATA 1418 Query 1261 TTATAAAGATAGAT 1274 | ||||||||||| Sbjct 1419 TG-TAAAGATAGAT 1431 Score = 110 bits (59), Expect = 5e-23 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 1 TCTCTTTCGAAGAAGTGAATCTGGACGAAGAACTAAGGCCGTCA-TTTCGGAACTTGAAC 59 ||| ||||||||||||||||||||||||||||||||||||| || ||| |||| |||||| Sbjct 97 TCTTTTTCGAAGAAGTGAATCTGGACGAAGAACTAAGGCCGCCAATTTTGGAATTTGAAC 156 Query 60 CATCAAATTCATCAA 74 ||||||||||||||| Sbjct 157 CATCAAATTCATCAA 171 Score = 71.3 bits (38), Expect = 2e-11 Identities = 42/44 (95%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1273 ATGTAGTTGTGTATTTTCAGGTGGATAACCTTTGGTTTATAGAA 1316 |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1448 ATGTAGTTTTGTATTTTCAGGTGGATAACCTTTGGTTTCTAGAA 1491 > AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5960481-5962481 REVERSE LENGTH=1477 Length=1477 Score = 316 bits (171), Expect = 3e-85 Identities = 490/633 (77%), Gaps = 66/633 (10%) Strand=Plus/Plus Query 436 GATTTCACTCCAGAGGAAGTTGGGAAA-CTGCAGAAGGAGCTGACGAAACTCTTGACGAG 494 ||||||||||| || || ||| ||||| ||||||| ||| ||| ||| |||||| | Sbjct 510 GATTTCACTCCTGAAGAGGTT-GGAAAGTTGCAGAAAGAGTTGATGAAGCTCTTGTC--- 565 Query 495 AAGGAGC-AAGAAGAGGAAGTCTGATGTGAATCGAGA-AT--TGGCGAATCTTCCTTTGG 550 || || | ||||| |||||||||||||||||| |||| | || ||||||||||| | Sbjct 566 AA-GAACTAAGAAAAGGAAGTCTGATGTGAATAGAGAGCTCATGAAAAATCTTCCTTTAG 624 Query 551 ATAGATTCTTGAATTGTCCTTCGAGTCTT-GAGGTCGATAGAAGAATCAGCAA----C-- 603 ||||||||||||| ||||| |||||| || ||||| ||||| |||||||||| | Sbjct 625 ATAGATTCTTGAACTGTCCATCGAGT-TTAGAGGTGGATAGGCGAATCAGCAATGCGCTT 683 Query 604 -GCGCT-TTGT-GA----T-----GAG---AAGGAAGAAGACATTGAGCGTACAATCAGT 648 ||||| |||| || | ||| ||||| ||||| || ||||| || || | Sbjct 684 AGCGCTGTTGTGGATTCGTCAGAGGAGAATAAGGAGGAAGATATGGAGCGAACGATTAAC 743 Query 649 GTTA-TCTTAGGGAGATGCAAGGCGATTTCGACAGAGAGCAAGAACAAGACGAAGAAGAG 707 |||| || |||| |||||||| | ||| || | |||||| ||||| | || ||| | || Sbjct 744 GTTATTC-TAGGTAGATGCAAAGAGATATCAATAGAGAGTAAGAA-TA-AC-AAG-A-AG 797 Query 708 TAAGAGAGACTTGAGCAA-AACCTCTGTTTC-TCATCTTCTCAAGAAGATGTTTGTCTGT 765 ||||||||| | ||||| || |||||| || | ||||| |||||||||| |||||||| Sbjct 798 -AAGAGAGACATAAGCAAGAA-CTCTGTCTCAT-ATCTTTTCAAGAAGATTTTTGTCTGC 854 Query 766 ACAGA-GGGTTTCTCTCCAGTTCCTAGCCCTAGCTTGAGAGACACGTTTCAAGAAACAAG 824 |||| ||| || ||| ||| || ||||||||||||||||||||| |||||||| |||| Sbjct 855 GCAGATGGGATT-TCTACAGCCCCAAGCCCTAGCTTGAGAGACACGCTTCAAGAATCAAG 913 Query 825 AATGGAGAAGTTGCTG-AGAATGATGCTACACAAGAAAATAAACACTCAA-ACTTCTTTA 882 ||||||||||||| || || |||||||| || ||||| || || ||||| || || | Sbjct 914 AATGGAGAAGTTGTTGAAG-ATGATGCTCCATAAGAAGATTAATGCTCAAGCCTCCTCGA 972 Query 883 AAGCAAACATCA---ACGA-AAA-A-ATACTTGCAAGACAAGCAACAACTTTCTTTGAAG 936 || | ||||||| || | ||| | |||||||||||||||| |||| || || ||||| Sbjct 973 AA-CCAACATCATTGACAACAAAGAGATACTTGCAAGACAAGAAACAGCTCTCACTGAAG 1031 Query 937 AATGAGGAAGAAG--A--A--G--A-AAGAAGTAGTAGCGATGGGGGTAAATGGGTCAAA 987 | ||||||||||| | | | | |||||||||||||||||| ||||||||||||| Sbjct 1032 AGTGAGGAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGCGATGGATATAAATGGGTCAAA 1091 Query 988 ACAGATTCTGATTTCATTGTTCTTGAGATCTGA 1020 ||||||||||||||||| ||||| ||||| ||| Sbjct 1092 ACAGATTCTGATTTCATAGTTCTCGAGATATGA 1124 Score = 65.8 bits (35), Expect = 1e-09 Identities = 40/42 (95%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 161 ACATGAAGTTCTTCGGGTGGATGCAGAACAAGCT-ACATGGG 201 |||||||||||||||||||||||||||||||||| | ||||| Sbjct 235 ACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTA-ATGGG 275 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64758703050 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5