BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476385
Length=2896
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72520.1 | Symbols: LOX4 | PLAT/LH2 domain-containing lipoxy... 4390 0.0
> AT1G72520.1 | Symbols: LOX4 | PLAT/LH2 domain-containing lipoxygenase
family protein | chr1:27308515-27312754 FORWARD LENGTH=3042
Length=3042
Score = 4390 bits (2377), Expect = 0.0
Identities = 2725/2890 (94%), Gaps = 36/2890 (1%)
Strand=Plus/Plus
Query 5 AAAATGGCTTTAGCTAATGAGATAATGGGTTCTCGTCTGATCTTTGAGAGATCATCATCA 64
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 94 AAAATGGCTTTAGCTAATGAGATAATGGGTTCTCGTCTAATCTTCGAGAGATCATCATCA 153
Query 65 CTTGCGTCTCCGTTTCAATCGCGTTTCTCCACCAAGAAGAGGACACAGAGAACGCAGTTC 124
||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 154 CTTGCGTCTCCGTTTCATTCGCGTTTCTCCATCAAGAAGAAGACACAGAGAACACAGTTC 213
Query 125 TCCATCAACCCTTTTGATCCGAAACCTATAAGAGCTGTTAACTCCAGCGGCGTTGTAGCA 184
|||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||
Sbjct 214 TCCATCAACCCTTTTGATCCGAGACCTATGAGAGCCGTTAACTCAAGCGGCGTTGTAGCG 273
Query 185 GCCATCAGC---GA---GG---AAACGCTGCGTATTAGCACCGTCGGTAGAAAAC----- 230
||||||||| || || ||||||||||||||||||| |||||||||||||
Sbjct 274 GCCATCAGCGAGGATTTGGTTAAAACGCTGCGTATTAGCACTGTCGGTAGAAAACAAGAG 333
Query 231 -AGGAGGAAGAGGAGGAGAAGTCGGTGAAGTTTAAGGTGAGAGCGGTTGCGACGGTGAGG 289
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 334 AAGGAGGAAGAAGAGGAGAAGTCGGTGAAGTTTAAGGTGAGAGCAGTTGCGACGGTGAGG 393
Query 290 AACAAGAACAAGGAAGATTTTAAAGATACTCTGGTTAAGCATTTGGATGCTTTTACTGAT 349
||||| ||||| || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 394 AACAAAAACAAAGAGGATTTTAAAGAAACTTTGGTTAAGCATTTGGATGCTTTTACTGAT 453
Query 350 AAAATCGGTAGAAACGTCGTCTTGGAGCTTATTAGTACCCAAGTTGATCCAAAAACGAAT 409
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 454 AAAATTGGTAGAAACGTTGTCTTGGAGCTTATGAGTACCCAAGTTGATCCAAAAACGAAT 513
Query 410 GAGCCAAAGAAGAGTAAAGCGGCGGTATTGAAAGACTGGTCAAAGAAATCGAAAAT-AAA 468
||||||||||||||||||||||| || |||||||| |||||||||||||| ||| | |||
Sbjct 514 GAGCCAAAGAAGAGTAAAGCGGCAGTTTTGAAAGATTGGTCAAAGAAATC-AAATTCAAA 572
Query 469 GGCGGAGAGAGTTCATTACACGGCGGAGTTCACGGTGGATTCCGCCTTTGGTTCGCCGGG 528
|||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 573 GGCGGAAAGAGTCCATTACACGGCCGAGTTCACGGTGGATTCAGCCTTTGGTTCTCCGGG 632
Query 529 AGCCATCACGGTAACCAACAAACACCAAAAAGAGTTCTTCCTTGAGAGCATCACCATTGA 588
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 633 AGCCATCACCGTGACCAACAAACACCAAAAAGAGTTCTTTCTTGAGAGCATCACCATCGA 692
Query 589 GGGTTTCGCATGTGGCCCTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCCCAAAAAGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 693 GGGTTTCGCATGTGGCCCTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCTCAAAAAGA 752
Query 649 CCATCCATCCAAACGAATTTTCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACCGTC 708
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CCATCCATCCAAACGAATTCTCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACCGTC 812
Query 709 CGGTCTAAGAACATTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGGAAAGGAGA 768
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 813 CGGTCTAAGAACATTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGTAAAGGAGA 872
Query 769 AAGAAAATTATCAGACAGAATCTACGATTTTGATGTCTACAACGACATAGGAAATCCGGA 828
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 873 AAGAAAATTATCAGACAGAATCTACGATTATGATGTGTACAACGACATAGGAAATCCGGA 932
Query 829 CATATCACG-GAAACTAGCCCGTCCCACATTTGGTGGTCC-TAAATTTCCTTACCCTAGA 886
||||||||| | ||||||||||||||||| ||||||| || | |||||||||||||||||
Sbjct 933 CATATCACGTG-AACTAGCCCGTCCCACACTTGGTGG-CCGTGAATTTCCTTACCCTAGA 990
Query 887 CGCTGTCGAACCGGCCGGTCTTCCACAGACACCGATATGATGTCTGAGAGGCGGGTGGAG 946
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 991 CGCTGTCGAACCGGCCGGTCTTCAACCGACACCGATATGATGTCTGAGAGGCGGGTGGAG 1050
Query 947 AAACCATTACCGATGTATGTGCCAAAAGATGAGCAGTTCGAGGAGTCTAAGCAGAACACT 1006
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1051 AAACCATTACCGATGTATGTGCCAAGAGATGAGCAGTTCGAGGAGTCTAAGCAGAACACT 1110
Query 1007 TTTGCTGCATGTAGGCTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGC 1066
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTTGCTGCATGTAGACTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGC 1170
Query 1067 ATTTTGGCTGAGGACTTCGCTAACTTCGGCGAGATCGATAGTCTTTACAAAGAAGGCTTG 1126
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1171 ATTTTGGCTGAGGACTTCGCTAACTTTGGTGAGATCGATAGTCTTTACAAAGAAGGCTTG 1230
Query 1127 CTTCTCAAGTTAGGGTTTCAAGATGATATGTTCAAGAAGTTCCCTTTGCCTAAGATCGTC 1186
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1231 CTTCTCAAGTTAGGGTTTCAAGATGATATGTTCAAGAAATTCCCTTTACCGAAGATCGTC 1290
Query 1187 ACTACCCTCCAAAAATCAAGCGAAGGCTTGCTTAGATACGACACTCCAAAAATAGTTTCA 1246
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1291 ACTACCCTCCAAAAATCAAGCGAGGGCTTGCTTAGATACGACACTCCTAAAATAGTTTCA 1350
Query 1247 AAGGATAAATACGCATGGCTTAGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1306
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1351 AAGGATAAATATGCATGGCTTCGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1410
Query 1307 AACCCGGTCAACATAGAACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCCGAG 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1411 AACCCGGTCAACATAGAACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCTGAA 1470
Query 1367 ATCTACGGTCCAGGTCTTCACTCCGCTCTCACAGAAGACCACATCATCGGTTACCTTGAC 1426
|||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 1471 ATCTACGGACCAGGTCTTCACTCCGCTCTCACGGAAGACCACATCATCGGTCAACTTGAT 1530
Query 1427 GGCTTATCCGTACAACAAGCGTTAGAGACAAACCGATTGTTTATGGTGGACTACCATGAC 1486
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1531 GGCTTAACCGTACAACAAGCGTTAGAGACGAACCGTTTGTTTATGGTGGACTACCATGAC 1590
Query 1487 ATATACTTACCGTTTCTAGATCGAATCAACGCGCTAGATGGACGCAAAGCTTACGCGACT 1546
||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 1591 ATATACTTACCGTTTCTAGATAGAATCAACGCGCTTGATGGACGCAAGGCTTACGCGACT 1650
Query 1547 CGAACCATATTGTTCTTGACCCGTCTAGGTACACTCAAGCCTATAGCGATCGAGCTAAGC 1606
||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 1651 CGAACCATATTGTTCTTGACCCGACTCGGTACACTCAAGCCTATCGCCATCGAGCTAAGC 1710
Query 1607 CTCCCGTCTCAATCAAGCTCAAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGTAGAC 1666
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 CTCCCTTCTCAATCAAGCTCAAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGTAGAC 1770
Query 1667 GCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGATCTAATGACGCTGGT 1726
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1771 GCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGGTCCAATGACGCTGGT 1830
Query 1727 GTCCACCAGCTTGTGAATCATTGGTTACGTACTCACGCGTGTTTAGAGCCGTTTATATTA 1786
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1831 GTCCACCAGCTTGTGAATCATTGGTTACGTACTCATGCGTGTTTGGAACCGTTTATATTA 1890
Query 1787 GCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCACATG 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 GCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCACATG 1950
Query 1847 AGGTACACTTTGGAGATCAATGCCGTGGCACGACAGACTTTGATTAGCGCGGACGGTGTG 1906
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1951 AGGTACACTTTGGAGATCAATGCCGTGGCACGACAGACTTTGATTAGTGCGGACGGTGTG 2010
Query 1907 ATCGAGTCGTGCTTCACAGCTGGTCAATACGGTCTAGAGATTAGTTCCGCTGCGTATAAG 1966
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 ATCGAGTCGTGCTTCACTGCTGGTCAATACGGTCTAGAGATTAGTTCCGCTGCGTATAAG 2070
Query 1967 AACAAATGGCGGTTCGATATGGAAGGCCTCCCTGCTGATCTCATCCGAAGGGGAATGGCT 2026
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2071 AACAAATGGCGGTTTGATATGGAAGGTCTCCCTGCTGATCTCATCCGAAGGGGGATGGCT 2130
Query 2027 GTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTCGAAGACTACCCATACGCC 2086
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2131 GTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTTGAAGACTACCCATACGCC 2190
Query 2087 AACGACGGTCTCTTATTATGGTCCGCGATCCAAACCTGGGTCCGAACCTACGTGGAACGT 2146
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2191 AACGACGGTCTCTTATTATGGTCCGCAATCCAAACTTGGGTCCGAACCTACGTGGAACGT 2250
Query 2147 TATTACCCAGACCCGAATCTAATCCAAACCGACA-TCGAACTCCAAGCCTGGTACTCCGA 2205
|||||| || || |||| |||||||||||||| | | || ||||||||||||||||| ||
Sbjct 2251 TATTACGCAAACTCGAACCTAATCCAAACCGATACT-GAGCTCCAAGCCTGGTACTCTGA 2309
Query 2206 GTCAATCAACGTAGGTCACGCCGATCACCGCGACGCCGAGTGGTGGCCGGAGCTTTCCAC 2265
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2310 GTCAATCAACGTAGGTCACGCTGATCACCGCGACGCCGAGTGGTGGCCGAAGCTTTCCAC 2369
Query 2266 CGTCGAAGATCTCGTCTCTGTCATCACCACCATCATCTGGCTCGCCTCCGCACAACACGC 2325
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2370 CGTCGAAGATCTCGTCTCCGTCATCACCACCATCATCTGGCTCGCCTCGGCACAACACGC 2429
Query 2326 TGCACTCAACTTCGGACAATATCCTTACGGCGGCTATGTCCCAAACCGGCCACCGTTGAT 2385
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| | ||
Sbjct 2430 GGCACTCAACTTCGGACAATATCCTTACGGTGGCTACGTCCCGAACCGACCACCGCTAAT 2489
Query 2386 GCGGCGGTTGATTCCCGACGAGTCAGATCCCGAGTTCGCGAGTTTTATCGAAGATCCTCA 2445
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2490 GCGGCGGTTGATTCCCGACGAGTCAGATCCCGAGTTCACGAGTTTTATCGAAGATCCTCA 2549
Query 2446 AAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAGACGACGAAGTTTATGGCAGTGGT 2505
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2550 AAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAAACGACGAAGTTTATGGCGGTGGT 2609
Query 2506 TGATACATTGTCAACACATTCACCGGATGAGGAGTATATCGGAGAGAGACAACAACCGTC 2565
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2610 TGATACATTGTCGACACATTCGCCGGATGAGGAGTATATCGGAGAGAGACAACAACCGTC 2669
Query 2566 GATATGGACCGGAGATGCTGAGATTGTTGATGCGTTTTATGGATTTTCGGCGGAAATCGG 2625
||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 2670 GATATGGACTGGAGATGCTGAGATCGTAGATGCGTTTTATGGATTCTCGGCGGAAATCGG 2729
Query 2626 ACGGATAGAGAAGGAGATTGAGAAGAGGAATCGTGATCCTAGCCGTAGGAATCGGTGTGG 2685
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2730 ACGGATAGAGAAGGAGATTGACAAGAGGAATCGTGATCCTAGCCGTAGGAATCGCTGTGG 2789
Query 2686 CGCCGGAGTTTTACCGTACGAGTTGATGGCTCCAAGTTCTGAACCCGGTGTTACGTGTAG 2745
||| ||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2790 CGCGGGAGTGTTACCGTATGAGTTGATGGCTCCGAGTTCTGAACCGGGTGTTACGTGTAG 2849
Query 2746 AGGCGTGCCTAATAGTGTATCCATTTAGAATTATTAAATTTG--A--GTATAGAGAATTT 2801
||| ||||||||||||||||| ||||||||||||| ||||| | |||||||||||||
Sbjct 2850 AGGAGTGCCTAATAGTGTATCTATTTAGAATTATTCAATTTTTCAAAGTATAGAGAATTT 2909
Query 2802 TATAAGTAAATAAATAGATTTTTGTCGCAAATATTTTGTATAGTTTATTTGCCGATGTTG 2861
|||||||| |||| |||||||| | |||| ||| | |||||||||||||| |||
Sbjct 2910 TATAAGTATATAATTAGATTTT-GACGCAG-TAT---G----GTTTATTTGCCGATATTG 2960
Query 2862 TAAAATTCTT 2871
||||||||||
Sbjct 2961 TAAAATTCTT 2970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143928959467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5