BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476389
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72550.1 | Symbols: | tRNA synthetase beta subunit family p... 2715 0.0
> AT1G72550.1 | Symbols: | tRNA synthetase beta subunit family
protein | chr1:27319688-27324037 REVERSE LENGTH=2185
Length=2185
Score = 2715 bits (1470), Expect = 0.0
Identities = 1762/1897 (93%), Gaps = 43/1897 (2%)
Strand=Plus/Plus
Query 1 AAACCCTAGTTCCAAAATCAGC-C-CACACT---AAGAAGAAGAAGTCATCTCTCTA--- 52
||||||||||||||||||| || | |||||| |||||||||| ||||||||||||
Sbjct 34 AAACCCTAGTTCCAAAATCTGCACACACACTCAGAAGAAGAAGACGTCATCTCTCTATCT 93
Query 53 ---TCTTTCTGCTAATTTCAC--A-AATCCGAGAATATGCCAACCATCAGTATTGGCAGA 106
|||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||
Sbjct 94 CTGTCTTTCTGCTAATTTCACGAAGAATCTGAGAATATGCCAACCATCAGTGTTGGCAGA 153
Query 107 GACCGGTTATTCGCTGCTCTTGGACAGTCCTACACTCAGGAAGAATTCGAGGATCTGTGT 166
||||| || ||||||||||||||| | ||||| ||||||||| |||||||||| |||||
Sbjct 154 GACCGTTTGTTCGCTGCTCTTGGAGAATCCTATACTCAGGAAAAATTCGAGGAACTGTG- 212
Query 167 TTTC-GTTTCGGTATCGAGCTTGATGATGTGACTACTGAGAAGGCAATTATAAGGAAAGA 225
|||| ||||||||||||||||||| |||||||||||||| |||||||| || || |||||
Sbjct 213 TTTCAGTTTCGGTATCGAGCTTGACGATGTGACTACTGAAAAGGCAATAATCAGAAAAGA 272
Query 226 GAAGCACATCGATGAAGAAGCTGATGATGATGAAGAAATCATCTACAAGATTGAAATTCC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GAAGCACATCGATGAAGAAGCTGATGATGATGAAGAAATCATCTACAAGATTGAAATTCC 332
Query 286 TGCCAACAGATATGATTTGCTTTGCCTCGAAGGGCTTGCGCAAGCTCTTCGCGTTTTCAA 345
|||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 333 TGCCAACAGACCTGATTTGCTTTGCCTCGAAGGGCTTGCTCAATCTCTTCGCGTTTTCAT 392
Query 346 CAAGAAACAGGAGATACCAACGTATACCCTTGCTGACATTAGCAAAGACAAGCTCCTTAA 405
| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 393 CGAGAAACAGGAGATACCAACGTATACTCTTGCTGACATTAGCAAAGACAAGATCCTTCA 452
Query 406 AATGAATGTTAAACCTGAGACATCGAAGATTCGCCCATTTGTCGTATGTGCTGTTTTAAG 465
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 453 AATGAATGTTAAACCTGAGACATCGAAGATTCGTCCATTTGTTGTATGTGCTGTTTTAAG 512
Query 466 AGGTGTAACGTTTGACGAGGCTCGTTACAACAGCTTCATTGATCTTCAGGATAAGCTACA 525
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 513 AGGTGTAACCTTTGACGAGGCTCGTTACAACAGCTTCATTGATCTTCAGGATAAGTTACA 572
Query 526 TCAGAATATTTGCCGGCGAAGATCCCTGGTTGCAATTGGAACTCATGACCTTGATACATT 585
||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 573 TCAGAATATTTGCAGGCGAAGGTCCTTGGTTGCTATTGGAACTCATGACCTTGATACATT 632
Query 586 GCAGGGCCCATTCACATACGAGGCTTTGCCGCCAACGGAGATAAATTTTGTACCTTTGAA 645
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 633 GCAGGGTCCTTTCACATACGAGGCTTTGCCGCCAACGGATATAAATTTTGTACCTTTGAA 692
Query 646 GCAAACAAAGAGCTTCAGGGCTGATGAACTAATTGAATTCTACAAGTCAGATATGAAGCT 705
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 693 GCAAACAAAGAGCTTCAGGGCTGACGAACTTATTGAATTCTACAAGTCTGATATGAAGCT 752
Query 706 GAAAAAATTCCTACACATAATCGAGAATTCACCCGTCTTCCCTGTTTTATACGACAGTAA 765
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GAAAAAGTTTCTACACATAATCGAGAATTCACCCGTCTTCCCTGTTTTATACGACAGTAA 812
Query 766 GAGAACTGTGCTGTCATTGCCGCCTATTATCAATGGTGCACATTCAGCAATTACCTTACA 825
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 813 GAGAACTGTGCTGTCATTGCCACCTATTATCAATGGTGCACATTCAGCAATTACCTTACA 872
Query 826 GACAAAGAATGTCCTCATTGAATGTACAGCAACTGATTTGACGAAGGCCAAAATTGTTTT 885
||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 873 GACAAAGAATGTCTTCATTGAATGTACTGCAACTGATTTGACGAAGGCCAAGATTGTTTT 932
Query 886 GAATACAATGGTTACAACCTTTTCAGAATATTGTGCGAGAAAATTTGAGATTGAGCCTGT 945
||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 933 GAATACAATGGTTACAACCTTCTCAGAATTTTGTGCCAGAAAATTTGAGATTGAGCCTGT 992
Query 946 TGAAGTTACGTACGACGATGGAAAGTCATACATCTATCCGGATTTAGCTGTCTATGATAT 1005
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TGAAGTTACATACGACGATGGAAAGTCATACATCTATCCGGATTTAGCTGTCTATGATAT 1052
Query 1006 GGAAGTTCCTCTCTCTTACATTACAGACTCAATTGGAGTCTCTTTGGAGGTGGAACAGGT 1065
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1053 GGAAGTTCCTCTCTCTTTCATTACAGACTCAATTGGAGTCTCTTTAAAGGTGGAACAGGT 1112
Query 1066 TACAAGTCTGCTGACCCGAATGCAGTTGCATGCTGAGCAAGCAAAATCTAGTGATAACCA 1125
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1113 TACAAGTCTGCTGACCCGAATGCAGCTGCAAGCTGAGCAAGCAAAATCTAGTGATAACCA 1172
Query 1126 GTGTGCCATCAAAGTACATGTACCCCCCAGCAGGAGCGACGTTCTCCACCCTTGTGATGT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GTGTGCCATCAAAGTACATGTACCCCCCAGCAGGAGCGACGTTCTCCACCCTTGTGATGT 1232
Query 1186 TATGGAGGATGTTGCCATTGCCTATGGTTTCAATAACATCCCAACAAGAAAGCCTGCTTC 1245
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1233 TATGGAGGATGTTGCCATTGCCTATGGTTTCAATAACATTCCAACAAGAAAGCCTGCTTC 1292
Query 1246 GATAAAACCACTGCCTTTGAATGAGCTCACTGATCTTCTAAGAATAGAGATTGCGATGAA 1305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 GATAAAACCACTGACTTTGAATGAGCTCACTGATCTTCTAAGAATAGAGATTGCGATGTG 1352
Query 1306 TGTGTACACCGAGGTGGTAACGTGGCTACTATGCTCGCATAAAGAGAACTTTGCGATGCT 1365
||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1353 TGTGTACACGGAGGTGGTAACGTGGCTACTATGCTCACATAAGGAAAACTTTGCGATGCT 1412
Query 1366 AAATAGAGTGGATGATAACTCAGCCGTCATAATTGGGAACCCGCGGTCTGCTGATTTTGA 1425
|||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1413 AAATAGAGAGGATGTTAATTCAGCCGTCATAGTTGGGAACCCGCGGTCTGCTGATTTTGA 1472
Query 1426 GGCCATGAGGAGGACTCTGATGCCCGGGAT-ATTGAAGACAGTTGGTTC-CAACAA-AGA 1482
||||||||||||| |||| |||||||| || |||||||||||||||| | |||||| | |
Sbjct 1473 GGCCATGAGGAGGGCTCTCATGCCCGG-ATTATTGAAGACAGTTGGT-CACAACAATAAA 1530
Query 1483 CCACCCTAAACCAATTAAGATTTATGAAATCAGTGATGTGGCCATGTTGGACGAGAGCAA 1542
||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 1531 T-ACCCTAAACCAATTAAGATTTTTGAAATCAGTGATGTGGTCATGTTGGATGAGAGCAA 1589
Query 1543 AGATGTTGGTGCATCCAATCGTCGCCATCTCGCTGCACTACACTGTGGTGCTACTTCTGG 1602
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1590 AGACGTTGGTGCATCCAATCGTCGCCATCTCGCTGCACTATACTGTGGTGCTACTTCTGG 1649
Query 1603 ATTTGAGCTTATCCATGGCCTCGTGGATAGAATTATGGAAGTGATGGCAATCCCATTTGT 1662
||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||| |
Sbjct 1650 ATTTGAGCTTATCCATGGCCTGGTCGATAGGATCATGGAAGTGATGGCAATACCATTTCT 1709
Query 1663 AAAAATC-A--A---T---G-AC-AAT-AA---------CGGATACTATATAAAGCTCTC 1701
|| |||| | | | | || ||| || |||||||||| ||||||||||
Sbjct 1710 AACAATCCATGAAAATAACGTACCAATCAATGAAAAAGACGGATACTATGTAAAGCTCTC 1769
Query 1702 TCAAGAGCCCGAGTTTCTACCGGGCAGGCAAGCTAGCATCGTTGTCAGAGGGAAACAAAT 1761
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1770 CCAAGAACCCGAGTTTCTACCGGGCAGGCAAGCTAGCATCATTGTCAGAGGGAAACATAT 1829
Query 1762 TGGTAACTTTGGAATCGTGCATCCTCAGGTTTTGAACAACTTTGACATCCCTGATCCATG 1821
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1830 TGGTAACTTTGGAATCGTGCATCCTGAGGTTTTGAACAACTTTGACATCCCTGATCCATG 1889
Query 1822 CTCTTTCGTGGAGATAGACATCGAAGCTCTCTTATAG 1858
||||| | ||||| |||||||||||||| ||||||||
Sbjct 1890 CTCTTACTTGGAGTTAGACATCGAAGCTATCTTATAG 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91967398440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5