BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476393
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72610.1 | Symbols: GLP1, ATGER1, GER1 | germin-like protein... 1273 0.0
> AT1G72610.1 | Symbols: GLP1, ATGER1, GER1 | germin-like protein
1 | chr1:27339114-27340044 REVERSE LENGTH=931
Length=931
Score = 1273 bits (689), Expect = 0.0
Identities = 830/894 (93%), Gaps = 25/894 (3%)
Strand=Plus/Plus
Query 1 ACACAGTTTATCCAACACCTCTCTATATAAACACTC--ga--ga-a-gagt-ag-aga-- 50
||||||||||||| |||||||||||||||||||| | || || | |||| || |||
Sbjct 1 ACACAGTTTATCCCACACCTCTCTATATAAACACCCGAGACCGAGAGGAGTGAGAAGAGT 60
Query 51 a---aaaaagaaaagaaaagaagag-agT-TAGT--TCTTAAACCAATCATTCAAAAATG 103
| |||||||||||||||| |||| | | | | ||||||||||| ||||| ||||||
Sbjct 61 AGGGAAAAAGAAAAGAAAAGTAGAGTACTATCTTCCTCTTAAACCAACCATTC-AAAATG 119
Query 104 ATGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGAT 163
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGAT 179
Query 164 TTCTGTGTCGCAAACCTGAAACGCGCTGACACGCCTGCGGGTTACCCTTGCATTCGTCCC 223
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 180 TTCTGTGTCGCAAACCTGAAACGCGCTGAAACCCCTGCGGGTTACCCTTGCATTCGTCCC 239
Query 224 ATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCCGGAAACACTACA 283
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 ATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCTGGAAACACTACA 299
Query 284 AACATCATCAGCGCCGCTGTCACGCCCGCTTTCGTC-GCTCAGTTCCCAGGTCTGAACGG 342
|||||||||| |||||||||||| |||||||||| | ||||||||||| |||||||||||
Sbjct 300 AACATCATCAACGCCGCTGTCACACCCGCTTTCG-CAGCTCAGTTCCCGGGTCTGAACGG 358
Query 343 TCTAGGCCTCTCTACAGCTAGACTTGACCTAGCTCCTAAAGGTGTGATCCCAATGCACAC 402
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 TCTAGGCCTCTCTACAGCTAGACTTGACTTAGCTCCTAAAGGTGTGATCCCAATGCACAC 418
Query 403 TCACCCTGGTGCCTCTGAGGTTCTCTATGTCCTTGAC-GGCTCCATTACCGCTGGGTTTG 461
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 419 TCACCCTGGTGCCTCTGAGGTTCTCTTTGTCCTT-ACTGGCTCCATTACCGCTGGGTTTG 477
Query 462 TCTCCTCTGCAAACGCTGTCTACGTGCAGACACTTAAACCAGGACAGGTCATGATTTTCC 521
||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 478 TCTCCTCGGCAAACGCTGTCTACGTGCAGACACTCAAACCAGGACAGGTCATGGTTTTCC 537
Query 522 CACAGGGATTGCTGCATTTCCAGATCAATGCAGGAAAATCCTCTGCAGCAGCCATTGTCA 581
||||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct 538 CACAGGGCTTGCTTCATTTCCAGATCAACGCGGGAAAATCCTCTGCTTCAGCCGTTGTCA 597
Query 582 CATTCAACAGCGCTAGTCCGGGTCTGCAGATTCTCGATTTCGCACTCTTTGCTAACAATC 641
| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 598 CTTTCAACAGCGCTAATCCGGGTCTGCAGATTCTCGACTTCGCACTCTTTGCTAACAGTC 657
Query 642 TTCCCACTGAACTCGTTGTGGGTACTACTTTCCTTGACGCTACTACAGTCAAGAAGCTAA 701
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 TTCCCACTGAACTCGTCGTGGGTACTACTTTCCTTGACGCCACTACAGTCAAGAAGCTAA 717
Query 702 AGGGTGTTCTTGGAGGAACCGGCTaaaaaaaGACTTAGGACT-C-C-TTGACTAAAACAC 758
||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||
Sbjct 718 AGGGTGTTCTTGGAGGAACTGGCTAAAAAAAGACTTAGGACTACTCCTTGACTAAAACAC 777
Query 759 CAAAACCTGtttcttcttcttcttttctctttgattgattcttgtcttctctgttttgtg 818
|||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 778 CAAAACCTGTTTCTTCATCTTTTTTTCTCTTTAATTGATTCTTGTCTTCTCTGTTTTGTG 837
Query 819 tcccgtgtaattcttcAAAACCTGTCAAAATGGTTACATTGTATGTGAGTTTTT 872
| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 TGCCTTGTAATTCTTCAAAACCTGTCAAAATTGTTACATTGTATGTGAGTTTTT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5