BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476398

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72645.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   237    1e-61


> AT1G72645.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 35333 Blast hits to 
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; 
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; 
Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:27348381-27349219 
FORWARD LENGTH=839
Length=839

 Score =  237 bits (128),  Expect = 1e-61
 Identities = 163/179 (91%), Gaps = 5/179 (3%)
 Strand=Plus/Plus

Query  381  TAATGGGTTTGTGTTTAGAttttttc-ttttcttttCAAGTCTCCATTGTTGCAGGAGAA  439
            |||||| ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||
Sbjct  565  TAATGGTTTTGTGTTTAGTTTTTTTCTTTTTCCTTTCAAGTTTCCATTGTTGCAGGAGAA  624

Query  440  ACAGGTCTACTCATG-CATGCAACTTCCATTCCATGATGCAGCAAAAGGATCGTTGTTGC  498
            ||||||||||||| | |||||||||||||||| |||||||||||||| |||| |||||||
Sbjct  625  ACAGGTCTACTCA-GACATGCAACTTCCATTC-ATGATGCAGCAAAATGATCATTGTTGC  682

Query  499  AAGAGAAGAAAAGTCCACAATGAGGTTCTGAAGGATCAAGGACATTGTTTACCAACAAA  557
            ||||||||| ||||||||||||| || || |||||||||||||||| |||| |||||||
Sbjct  683  AAGAGAAGAGAAGTCCACAATGATGT-CTCAAGGATCAAGGACATTATTTAGCAACAAA  740


 Score =  231 bits (125),  Expect = 4e-60
 Identities = 160/175 (91%), Gaps = 9/175 (5%)
 Strand=Plus/Plus

Query  174  TTTTGATGGTATAAGAGGATCCAATGACAATGCTTATATTAAAAATGGAGTTTATAGTCT  233
            |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  303  TTTTGATGGTATAAGAGGATTCAGTGACAATGCTTATATTAAAAATGGAGTTTATAGTCT  362

Query  234  CTCTGAACTATCTATTTCCAAGTTCTTGGGAGTTCGGAAGCACCTTACATCGGCGACATT  293
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  363  CTCTGAACTATCTATGTCCAAGTTCTTGGGAGTTCGGAAGCACCTTACATCGTTGACATT  422

Query  294  TGTTCTACTCTTTCTAAGTTTTCCTATGACAATTCTTTTCGTTTGCACATGCAGA  348
            |||||||        | ||||||||||||||||||||||||||||||||| ||||
Sbjct  423  TGTTCTA--------A-GTTTTCCTATGACAATTCTTTTCGTTTGCACATTCAGA  468


 Score =  113 bits (61),  Expect = 2e-24
 Identities = 141/176 (80%), Gaps = 19/176 (11%)
 Strand=Plus/Plus

Query  12   TTTTGT-TCTCTCTTTCTATGAGTCTCTTTATTCATAGATGTATTCGTTTGATTCTATCT  70
            |||||| | | || |||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct  42   TTTTGTGT-TATC-TTCTATGAGTCTCTTTATTCATAGATGTTTTCGTTTGATTATATAT  99

Query  71   A---TA-T-AT-ATA-C--CTTACTGAT-TAGTTATGTTATGAATTTATGA-TGTAGCTT  119
            |   || | ||  || |   ||| |||| ||| |  ||| | | || | || || | || 
Sbjct  100  ACCTTAGTCATGTTATCTATTTA-TGATGTAGCT-CGTTCTTACTTGA-GATTGCA-CTA  155

Query  120  GT-TTCTTGCTTATTGACATATAAATCTTGATTTAAACTCCCTCTGGATATTCTTT  174
            ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  156  GTAGTCTTGCTTAATGACATATAAATCTTGATTTAAACTCCCTCTGGATATTCTTT  211



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29638146730


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5