BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476400
Length=2391
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72650.2 | Symbols: TRFL6 | TRF-like 6 | chr1:27349467-27353... 3469 0.0
> AT1G72650.2 | Symbols: TRFL6 | TRF-like 6 | chr1:27349467-27353740
FORWARD LENGTH=2419
Length=2419
Score = 3469 bits (1878), Expect = 0.0
Identities = 2238/2409 (93%), Gaps = 36/2409 (1%)
Strand=Plus/Plus
Query 1 AAAAAGAAAAGCCTAAAGAGAGCCAAACATAAAAAGCAGTACCAAAATTTTCCAAATTTC 60
||||| |||||||||||| ||||||||||| |||||||||||||||| |||||| ||||
Sbjct 16 AAAAAAAAAAGCCTAAAGGGAGCCAAACAT-AAAAGCAGTACCAAAAATTTCCACTTTTC 74
Query 61 TTTTAACCCTTTTTGCTTATCTAAGAAGTTTCTCGTCTGAAATCATCGAAGATTAATC-- 118
||||||| ||||||||| |||||||| ||||| ||||||||||||| |||||||||
Sbjct 75 -TTTAACCTTTTTTGCTTGTCTAAGAAACTTCTCCTCTGAAATCATCGTAGATTAATCTG 133
Query 119 TATTCTTAGATATGACTT-TGTCTCCGACGCTTTGAGGTCACCTGAAAGTGTAATCAATC 177
| |||||||| |||| || ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 134 TTTTCTTAGACATGA-TTAAGTCTCCGACGCTTTGAGGTAACCGGAAAGTGTAATCAATC 192
Query 178 GCTTTTCTGCTATAATTGTCACTCTCCGGCGACAAAACTTGGTTTCCGGTGGTAAGCAT- 236
|||| | |||| || |||||||||||||||||||||||||| ||||||||| | || |
Sbjct 193 GCTTGT-TGCTGTATTTGTCACTCTCCGGCGACAAAACTTGATTTCCGGTGAT-AGTGTG 250
Query 237 TTTTTAAGTTGGATTTGCGATGGGAACTGTGGTTGGAACTGTTGAGGACCGCAGAGATAT 296
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TTCCTAAGTTAGATTTGCGATGGGAACTGTGGTTGGAACTGTTGAGGACCGCAGAGATAT 310
Query 297 GTTTGAGGGCAGTGCTCAGACAAGGATCACACCGTTTTCTTCAACAAATCAGATTGGAAA 356
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 311 GTTTGAGGGCAATGCTCAGACAAGGATCACACCATTTTCTTCAACAAATCAGATTGGAAA 370
Query 357 TCCTGTTGCCTACAAGCTTGTCCGGGTTTCAGGAGATGGGAGTCTAGTGCCTGCAACCGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCCTGTTGCCTACAAGCTTGTCCGGGTTTCAGGAGATGGGAGTCTAGTGCCTGCAACCGA 430
Query 417 TGAAGAAATTTTGGAGGTCAATGAGACGGATATGCATATTGCATCAGATGCATGTCAGAC 476
||||||||||||||| |||||||| || |||||||||||| |||||||| | ||||||||
Sbjct 431 TGAAGAAATTTTGGAAGTCAATGACACCGATATGCATATTCCATCAGATACTTGTCAGAC 490
Query 477 TGTAGGCTACCTTGCAACCGATGAAGAAAAT-TCGGAGATCAATGAGACGGTTATGCATA 535
| ||||||||||||||||||||||||||||| | |||| || ||||||||| ||||||||
Sbjct 491 TATAGGCTACCTTGCAACCGATGAAGAAAATGT-GGAGGTCGATGAGACGGATATGCATA 549
Query 536 TTGCATCAGATGCTTGTCAGACTGTAGGCTACCTTCCAGCTGAAGTGATACCTTCTCGGT 595
||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 550 TTGCATCAGATGCTTGTCAGACTATAGGTTACCTTCCAGCTGAAGGGATACCTTCTCGGT 609
Query 596 TGTCCCAGCTTGAAAGTTCAGAAGCTATCAATTCAGGTTTATTGCAGTATGATAATGTGC 655
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 610 TGTCCCAGATTGAAAGTTCAGAAGCTATCAATTCAGGTTTATTGCATTCTGATAATGTGC 669
Query 656 AACCATATACAGACCAGGTAAAGTCTCCACCTGAGTATAATGAGAAGATGTTGCAAAAGG 715
||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||
Sbjct 670 AACCATATACAGACCAGGTAAAGTCTCGATCTGAGTATAACGAGGAGATGTTGCAAAAGG 729
Query 716 TTGAACAGGAAGAGAGGCTTG-GCAATGTACATGGATCTCAGATGCCTTCTACTCCTCCA 774
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||
Sbjct 730 TTGAACAGGAAGAGAGGCTTGAG-AATGTACATGGATCTCAGATGCCTTCCACTCCTGCA 788
Query 775 GATGCCAATATCCAGTGTTCTAATGAAAACAACTTTTTTGAGGAGGATCAAGTCCACCAT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GATGCCAATATCCAGTGTTCTAATGAAAACAACTTTTTTGAGGAGGATCAAGTCCACCAT 848
Query 835 GAAGATTTGCTGCAAAATGAATGCAATATGAATCAATCTGATAAGATTGAACCATGCTCA 894
|||| ||| ||||| |||||||||| |||||| ||||||||| ||| |||| |||||||
Sbjct 849 GAAGCTTTACTGCAGGATGAATGCAAGATGAATGAATCTGATATGATGGAACGATGCTCA 908
Query 895 AACGCAGCAGCTAGTCCCAAAGAAACTACATTGTCTGCTGCTGCTCAAAAACCTGATTTT 954
||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 909 AACGCAGTTGCTAGTCCAAAAGAAACTGCATTGTCTGCTGCTGCTCAAAAACCTGATTTT 968
Query 955 TCTAGAGTTAGAGGCGAGATCTGCTTGGATAATTTACCGATTAAAGCACTGCAAGAAACA 1014
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TCTAGAGTTAGAGGTGAGATCTGCTTGGATAATTTACCGATTAAAGCACTGCAAGAAACA 1028
Query 1015 TTCAGGGCTACGTTTGGCCGTGAGACGACTGTTAAGGACAAGACGTGGCTCAAAAGGAGG 1074
|||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1029 TTCAGGGCAACTTTTGGCCGTGATACGACTGTTAAGGACAAGACGTGGCTTAAAAGGAGG 1088
Query 1075 ATTGCAATGGGACTTATTAATTCTTGTGATGTACCAGCAACTAACCTGAGAGTGAAGGAT 1134
|||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||
Sbjct 1089 ATTGCAATGGGACTTATTAATTCTTGTGATGTACCAACAACTAACTTGAGGGTGAAAGAT 1148
Query 1135 AA-AATGTTAGTTGGAAATCAAGAGAAGTCCAATGATGTGACTAATGCCATTAGCAATGA 1193
|| || |||| |||||||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct 1149 AACAA-GTTAATTGGAAATCAAGAGAAGTCCAACGATGTGACGAATGCCATTAGAAAGGA 1207
Query 1194 TATGGGTGATGACGTAAGAGCTACTAAAGTGAAAGATGCACCATCGAGTACTGATCATGT 1253
||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1208 GATGGGAGATGACGTAAGAGCTACTAAAATGAAAGATGCTCCATCGAGTACTGATCATGT 1267
Query 1254 GAAGGGACATTCAAACGGTGGTGACCACTATTATGCTAGTGATGATTATTCCAATGAACA 1313
||| ||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||
Sbjct 1268 GAATGGACATTCAAACGGTGGCAACCACTATTACGCTAGTGAGGATTATTCCAGTGAACA 1327
Query 1314 GAGGGCTGCAAAACGAGTTAGGAAGCCTACACGAAGATACATTGAAGAACTTTCAGAAAC 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1328 GAGGGCTGCAAAACGAGTTAGGAAGCCTACACGAAGATACATTGAAGAACTTTCGGAAAC 1387
Query 1374 AGATGAAAAACAGCAAAATGAGAAGTCAATGATTCCTTCTAAAGATCAGAGGCTGTCCGA 1433
|||||| |||||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 1388 AGATGATAAACAGCAAAATGACAAGTCAGTGATTCCTTCTAAAGATCAGAGGTTGTCCGA 1447
Query 1434 AAAATCTGAGGTCAGGTCTATCAGTGTCTCCTCGGGGAAGAGAGTTACCGTCACCAGGAT 1493
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1448 AAAATCTGAGGTCAGGTCTATCAGTGTCTCCTCAGGGAAGAGAGTTACTGTCACCAGGAT 1507
Query 1494 GGTATCCCTTGCTGGATCTGAGATTGAGGTTCCTTATGTTTCTCATGTCCGGAGAAGCCG 1553
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GGTATCCCTTGCTGGATCTGAAATTGAGGTTCCTTATGTTTCTCATGTCCGGAGAAGCCG 1567
Query 1554 CCCAAGAGAGAACATTATGGCTCTTATGGGATGTCATTCCAGTTGCTTGGAAGATAAAGC 1613
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1568 TCCAAGAGAGAACATTATGGCTCTTTTGGGATGTCATTCCAGTTACTTGGAAGATAAAGC 1627
Query 1614 TAGTGCAACAGAGAGTAACCTCAATCTGAGTCCATCTCAGTTAAGCAGTGAGGTTGTGAA 1673
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1628 TAGTGCAGCAGAGAGTAACCTCAATCTGAGTCCATCCCAGTTAAGCAGTGAGGTTGTGAA 1687
Query 1674 CCGAGATTCGGTGGAAAATTCTGCTTCTCGACCGGTCCAAAAAGAATTTGCTACAAGTGA 1733
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1688 CCGAGATTCGGTGGAAAAGTCTGCTTCTCGACCGGTCCAAAACGAATTTGCTACAAGTGA 1747
Query 1734 CGATAACAATGAGGAGCATATTGTCTCTGAGGTTGATCAAGACATGGAGCCAGAGCACAT 1793
||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1748 CGAGAACAATGTGGAGCATATTCTCTCTGAGGTTGATCAAGAGATGGAGCCAGAGCACAT 1807
Query 1794 AGACTCATCTGGAAATAGCTCGGATGACAATAATAACATTGGCGTGCCAATCATGCAAGG 1853
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 1808 AGACTCATCTGGAAATAGCTCGGATGAGAATAA---CATTGGTGTGCCAATCATGCAAGG 1864
Query 1854 TGGTACACTTAGAAGGAAGCATCATCGAGCTTGGACTCTGTCTGAGGTTA-CAAAACTAG 1912
|||| | ||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1865 TGGTGCGCTTAGAAGGAAGCATCATCGAGCTTGGACTCTGTCTGAGAT-AGCAAAACTAG 1923
Query 1913 TTGAAGGTGTATCAAAATATGGAGCCGGGAAGTGGTCTGAAATCAAAAAGCATTCCTTTT 1972
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1924 TTGAGGGTGTATCAAAATATGGAGCCGGGAAGTGGTCTGAAATCAAAAAGCATTTGTTTT 1983
Query 1973 CATCATACTCATATCGGACCTCTGTAGATCTCAAGGACAAATGGCGAAATCTTCTGAA-A 2031
||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 1984 CATCACACTCCTATCGTACCTCTGTAGATCTCAAGGACAAATGGCGAAACCTTTTGAAGA 2043
Query 2032 TCAAGCTTTGCTCAGAGTCCCTCACACAGCACGGGAAATCTCAAGAAACATGGGTCAATG 2091
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||
Sbjct 2044 -CAAGCTTTGCTCAGAGTCCCTCAAACAGCGTGGGAAGTCTCAAGAAACATGGGTCGATG 2102
Query 2092 CATATTCCTACGCAGATTCTGTTAAGGGTAAGGGAGCTCGCGGAGAAGCAATCTCAGTAA 2151
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2103 CATATTCCTACGCAGATTCTGTTACGGGTAAGGGAGCTTGCGGAGAAGCAATCTCAGTAA 2162
Query 2152 GCAAGTTTGTTGGAGATAGCAACAGAAAGGAAAAGGAAACAAGATCCGACTTCTAGTAGC 2211
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 2163 GCAAGTTTGTTGGAGATAGCAACAGAAAGGAAATGGAAACAAGGTCCGACTTCTTGTAGC 2222
Query 2212 TGAGTTTTT---GTAAAATAGCAACTCAAGTAAGGGAGACGAGAAATGTGAGATAA---- 2264
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2223 TGAGTTTTTTTTGTAAAATAGCAACTCAAGTAAGGGAGACGAGAAATGTGAGATAAGATA 2282
Query 2265 -CAGTTTCT-T--TAGACTTGTAACTTTCTAAGGAAGCTTTGTGGGTTATATATAT--AT 2318
|||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2283 ACAGTTTCTGTAGTAGACTTGTAACTTTCTAAGGAGGCTTTGTGGGTTATATATATTTAT 2342
Query 2319 GAGAAAAGTACTAAGCAGTGTCTGTGTCTTGAATTGGTATCAATGGGTTCTCTATAATAT 2378
|||||||||| |||| |||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 2343 GAGAAAAGTATTAAGTAGTGTCTGTGTCCTGAATTGGTATGAATGA-TTCTCTATAATAT 2401
Query 2379 CCATGGAAG 2387
|||||||||
Sbjct 2402 CCATGGAAG 2410
Score = 119 bits (64), Expect = 1e-25
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 408 TGCAACCGATGAAGAAATTTTGGAGGTCAATGAGACGGATATGCATATTGCATCAGATGC 467
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 503 TGCAACCGATGAAGAAAATGTGGAGGTCGATGAGACGGATATGCATATTGCATCAGATGC 562
Query 468 ATGTCAGACTGTAGGCTACCTT 489
||||||||| |||| ||||||
Sbjct 563 TTGTCAGACTATAGGTTACCTT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118724288925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5