BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476404
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72670.1 | Symbols: iqd8 | IQ-domain 8 | chr1:27356683-27358... 2556 0.0
AT1G17480.1 | Symbols: IQD7 | IQ-domain 7 | chr1:6006461-600826... 115 1e-24
> AT1G72670.1 | Symbols: iqd8 | IQ-domain 8 | chr1:27356683-27358853
REVERSE LENGTH=1656
Length=1656
Score = 2556 bits (1384), Expect = 0.0
Identities = 1568/1657 (95%), Gaps = 12/1657 (1%)
Strand=Plus/Plus
Query 1 ATCATTCTTCAGGCCACCAAAATTCCCAGAAActttctctctctttttcttcttcttctt 60
||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||
Sbjct 1 ATCATTCTTCAGGCCACCAAAGTTCCCAGAAACTTTCTCTTTCTTCTTCTTCTCCTTCTT 60
Query 61 c--CCCTCTCGAGATTTTTTACTTATAAATTCTCGAATCGACCTTTCTCCGCCGGATCTG 118
| | |||||||| |||||||| ||| ||||||||| | ||||||||||||||||||||
Sbjct 61 CTTCTCTCTCGAGTTTTTTTACAAATATATTCTCGAACCCACCTTTCTCCGCCGGATCTG 120
Query 119 ATTCCAAAACCTGTGAAAGTCTCCAACTTTATTACAGA-TTTTGAAG---AAC-AAA-GG 172
||||||||||||||||||||||||| ||||| |||||| |||||||| ||| ||| ||
Sbjct 121 ATTCCAAAACCTGTGAAAGTCTCCAGCTTTACTACAGATTTTTGAAGAACAACAAAAGGG 180
Query 173 TTTCAAATTTGAGCAAATGGGTGGCTCTGGGAATTGGATTAAATCTCTGATAACTAACAA 232
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TTTCAAATTTGAGCAAATGGGTGGCTCTGGAAATTGGATTAAATCTCTGATAACTAACAA 240
Query 233 AAAACCCATCACTGATGATCAAGAGAAGAATATCAAGAAGAAATGGAAACTATGGAGGAC 292
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 AAAAAACATCACTGATGATCAAGAGAAGAACATCAAGAAGAAATGGAAACTATGGAGGAC 300
Query 293 TTCATCAGAAGGTTTAATTTCTTCCTCAAAAGGTTTCAAGAGCCGTGGTGGTAGTTACGG 352
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 301 TTCATCGGAAGGTTTGATTTCTTCCTCAAAGGGTTTCAAGAGCCGTGGTGGTAGTTATGG 360
Query 353 AACTCCTTCGTTGGGTTCAGATCCGCCGTCTTTCTCTGCTGACGAGTCTTTCACGGCGGC 412
|||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 361 AACTCCTTCGTTAGGCTCAGATCCGCCGTCATTCTCTGCTGACGACTCTTTCACGGCGGC 420
Query 413 TGTTGCTGCAGTCATCAGAGCTCCGCCGAAAGATTTCTTTCTTGTTAAACGAGAATGGGC 472
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TGTTGCTGCTGTCATTAGAGCTCCGCCGAAAGATTTCTTTCTTGTTAAACGTGAATGGGC 480
Query 473 TGCTACACGGATTCAGGCTGCTTTTCGAGCTTTCCTGGCAAGACAAGCGCTGAGAGCTTT 532
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 TGCTACACGGATTCAAGCTGCTTTTCGAGCTTTCCTGGCAAGACAAGCGCTGAGAGCTCT 540
Query 533 GAAGGCAGTGGTGAGGATTCAGGCGATATTCCGTGGCAGGCAAGTCCGGAAACAAGCAGA 592
|||||| || |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 541 GAAGGCCGTAGTGAGGATTCAGGCAATATTCCGTGGGAGACAAGTCCGGAAACAAGCAGA 600
Query 593 TGTGACACTAAGGTGTATGCAAGCTCTTGTTCGAGTCCAAGCTCGGGTACGAGCTCATTG 652
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 TGTCACCCTAAGGTGTATGCAAGCTCTTGTACGAGTCCAAGCTCGGGTACGAGCTCATTG 660
Query 653 CAATAGGGGGCCTTCAGATGGACTGGACTTGCAGAAGCCATCTGATCAACAAAAAGATGA 712
|| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 661 TAACAGGGGGCCTTCAGATGGACAGGAGTTGGAGAAGCCATCTGATCAACAAAAAGATGA 720
Query 713 TCCGGCCAAACAGGCTGAGAAGGGTTGGTGTGATAGCCCGGGAAGTATAAATGAAGTGAG 772
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 TCCGGCAAAACAGGCTGAGAAGGGTTGGTGTGATAGCCCGGGAAGTATCAATGAAGTGAG 780
Query 773 AACAAAGCTACAAATGAGGCAAGAAGGAGCAATCAAGAGGGAGAGAGCTATGGTATATGC 832
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AACGAAGCTACAAATGAGGCAAGAAGGAGCAATCAAGAGGGAGAGAGCTATGGTATATGC 840
Query 833 CTTGACACACCAGCCGAGGACATGTCCAAGTCCGGCCAAGGTGAACAAGCAAGGTAGTGT 892
|||||||| ||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 841 ATTGACACATCAGCCGAGGACATGTCCAAGTCCGGCCAAGGCGAGCAAGCAAGGGAGTGT 900
Query 893 TAAAAAGAGTAATGGGTCGTGCAAGAGCAGTCCAGGTTGGAATTGGCTTGACCGATGGGT 952
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAAAAAGAATAATGGGTCGTGTAAGAGCAGTCCAGGTTGGAATTGGCTTGACCGATGGGT 960
Query 953 TGCAGACAGGCCATGGGAAGGTCGGTTGATGGAAGGTCCTACGAACTCATCAGAGAATGC 1012
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 961 TGCAGACAGGCCATGGGAAGGTCGGTTGATGGAAGGTCCTACAAACTCATCAGAAAATGC 1020
Query 1013 AAGGAAAAGTGAGAGCAGTGTGTCTGAACATGACACGGTTCAGGTCAGGAAGAACAATCT 1072
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1021 AAGGAAAAGCGAGAGCAGTGTGTCTGAACATGATACGGTTCAGGTCAGGAAGAACAATCT 1080
Query 1073 AACAACCAGAGTTTTGGCTAGACCTCCTCCAATGTCATCGTCTGCTACGAGTTCTGAGTC 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CACAACCAGAGTTTTGGCTAGACCTCCTCCAATGTCATCGTCTGCTACGAGTTCTGAGTC 1140
Query 1133 TTCGTCAACATCTCAATCCCCAGTTCCCTTCTCGGGAAGTTTCCTTGAGGAAGGAGGGTA 1192
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTCATCGACTTCTCAATCCCCAGTTCCCTTCTCGGGAAGTTTCCTTGAGGAAGGAGGGTA 1200
Query 1193 CTACAGAAAGCCGAGCTACATGAGCCTGACACAATCTATTAAAGCTAAGCAGAGACGATC 1252
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 CTACAGAAAGCCTAGCTACATGAGCCTCACACAATCTATTAAAGCTAAGCAGAGACGATC 1260
Query 1253 AGGGTCTTCATCCTCTTGTTCCAAAACACCGTTTGAGAAGAAACAGTCAATGTCTTACAA 1312
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1261 AGGGTCTTCGTCCTCTTGTTCCAAAACACCGTTTGAAAAGAAACAGTCAATGTCTTACAA 1320
Query 1313 CGGAGATGTAAATGTAAGGCGTAGTGCTGGTTCGGATCCATTGAGCAACCAGTGGACTGA 1372
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1321 CGGAGATGTAAATGTAAGGCGTAGTGCTGGTTCGGATCCGTTGAACAACCAGTGGACTGA 1380
Query 1373 TCTATACCCACCAGCTCAAGTAACAGGTAGACATATGTGGGCAAAGAGCCAGAGAGGCTA 1432
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1381 TCTATACCCACCAGCTCAAGTAACAGGAAGACATATGTGGGCAAAGAGCCAGAGAGGCTA 1440
Query 1433 AGCAATCATGCCTTCAATCATCTCAACAGCTTGTTGGTCCCATGAAACACATACACGGAA 1492
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGCAATCGTGCCTTCAATCATCTCAACAGCTTGTTGGTCCCATGAAACACATACACGGAA 1500
Query 1493 TATAGATACAGAAGCAACTTCTGTGTATCTTTTT---ACATATGAATGTTGAGGAATTAG 1549
|||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||
Sbjct 1501 TATAGATACAGAAGCAACTTCTGTTTATCTTTTTTTTACATATGAATGTTAAGGAATTAG 1560
Query 1550 TTTCGAGACTACAAATCTCGTTGTTTGGCACTTGGATCATCAATCGTTTACTTCTCATAT 1609
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1561 TTTCGAGACTACAAATGTCGTTGTTTGGCACTTGGATCATTAATCGTTTACTTCTCGTAT 1620
Query 1610 TTCCTGAAACAATCTGTTCCTAGCTCTTGTCAACATG 1646
||| ||||||||||| ||||||||||||||||| |||
Sbjct 1621 TTC-TGAAACAATCTATTCCTAGCTCTTGTCAATATG 1656
> AT1G17480.1 | Symbols: IQD7 | IQ-domain 7 | chr1:6006461-6008266
REVERSE LENGTH=1464
Length=1464
Score = 115 bits (62), Expect = 1e-24
Identities = 101/119 (85%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 1140 ACATCTCAATCCCCAGTTCCCTTCTCGGGAAGT-TTCCTTGA-GGAAGGAGGGTACTA-C 1196
||||||||||| |||||| | ||||| | ||| || ||||| || || |||||||| |
Sbjct 1035 ACATCTCAATCACCAGTTGCATTCTCCAGCAGTGTT-CTTGATGG-TGGTGGGTACTATC 1092
Query 1197 AGAAAGCCGAGCTACATGAGCCTGACACAATCTATTAAAGCTAAGCAGAGACGATCAGG 1255
||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||
Sbjct 1093 -GAAAGCCGAGCTACATGAGCCTGACACAATCTACTCAAGCCAAGCAGAGACAATCAGG 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81324882900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5