BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476410
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72740.1 | Symbols: | Homeodomain-like/winged-helix DNA-bin... 1125 0.0
> AT1G72740.1 | Symbols: | Homeodomain-like/winged-helix DNA-binding
family protein | chr1:27380294-27382924 REVERSE LENGTH=1306
Length=1306
Score = 1125 bits (609), Expect = 0.0
Identities = 833/933 (89%), Gaps = 48/933 (5%)
Strand=Plus/Plus
Query 120 CAAGGGTTAGATGGGAAACCAGAAATTAAAGTGGACGG-GAGAGGAAGAGGAGGCGTTAC 178
||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 228 CAAGGGTTAGATGGGAAACCAGAAACTAAAGTGGACGGCG-GAGGAAGAGGAGGCGTTAC 286
Query 179 TCGCCGGAATTGGAAAGCACGGTCCTGGTAAGTGGAAGAATATTCTCCGGGATCCCGAAT 238
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 287 TCGCCGGAATCAGAAAGCACGGTCCTGGAAAGTGGAAGAATATTCTCCGGGATCCAGAAT 346
Query 239 TCGCTGATCAGCTCATCCATCGCTCCAATATTGACCTAAAGGATAAGTGGCGTAACTTGA 298
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 347 TCGCTGATCAGCTCATCCATCGCTCCAACATTGACCTAAAGGATAAGTGGCGTAACTTGA 406
Query 299 GTGTTGCCCCTGGTACTCAAGGTTCAACTAATAAGGCACGACCGA-CAAAAGTCAAAGAG 357
||||| |||||||||||||| ||| ||||||||||||||| || | ||||||||||||||
Sbjct 407 GTGTTCCCCCTGGTACTCAAAGTTTAACTAATAAGGCACGGCC-AGCAAAAGTCAAAGAG 465
Query 358 GAA-G-G-----CC--CTGCAGTTGCAATTGATGATATCACTAATCCCCCTCCTAATACT 408
||| | | || |||||| ||||| ||||| | |||||| ||| | || || |
Sbjct 466 GAAGGCGACACTCCGGCTGCAGATGCAAATGATGCTGTCACTATTCCACGGCC---TA-T 521
Query 409 ATCCCTACTATTCCACCTCCTCCCAATCGGCGTATTTTACCTTCTGAGTTGATCCCTGAT 468
| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 522 -T-CCTACTATTCCACCTCCTCCCGGTCGGCGTACTTTACCTTCTGAGTTGATCCCTGAT 579
Query 469 GAAAAGAGTAACGTTGTGGTGGATACAAAGAATGTTCCCAGGTATGACGGGATGATATTT 528
|| || |||||||||||| ||| |||||||||||| ||||||||
Sbjct 580 -----GA--AA-----------ATACAAAGAATGCTCCTAGGTATGACGGGGTGATATTT 621
Query 529 GAAGCTCTCTCTGCTTTAGCGGATGGTAATGGATCTGATGTCAGTTCCATTTTTCATTTC 588
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 622 GAAGCTCTCTCTGCTTTAGCCGATGGTAATGGATCTGATGTCAGTTCCATTTATCATTTC 681
Query 589 ATTGAGCCTAGGCATGAAGTACCGCCAAATTTTAGAAGAATCCTTAGTTCAAGACTGAGG 648
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 682 ATTGAGCCCAGGCATGAAGTACCGCCAAATTTTAGAAGAATCCTTAGTACAAGACTGAGG 741
Query 649 AGGCTTGCAGCTCAGAGCAAACTTGAAAAGGTTAGCACCTTCAAATCTTTGCAGAACTTC 708
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 742 AGGCTTGCAGCTCAGAGCAAACTTGAAAAGGTTAGCACCTTCAAATCTATACAGAACTTC 801
Query 709 TATAAGATACCGGATCCATCAGGAACaaaaaaaCCTGCCCCAAAAACAAAGGAGACACAT 768
||||||||||| ||||||||||||||||||| | || ||||||| ||||||||||||||
Sbjct 802 TATAAGATACCCGATCCATCAGGAACAAAAATAGGTGTCCCAAAACCAAAGGAGACACAT 861
Query 769 ACGAAGCTGCGCCAAGCAAACAATCAGGCTTCTGCT-ATTTCACTACAGATGATCGAGGA 827
||||||||||||||||||||||||||| | |||||| ||| ||| |||||||||||||||
Sbjct 862 ACGAAGCTGCGCCAAGCAAACAATCAGACCTCTGCTGATT-CACAACAGATGATCGAGGA 920
Query 828 AGCTGCAATAACCGCTGCCTGTAAAGTCGTAGAGGCAGAGAATAAAATAGACGTTGCCAA 887
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 921 AGCTGCAATAACCGCAGCCTGTAAAGTCGTAGAGGCGGAGAATAAAATAGACGTTGCCAA 980
Query 888 ACTAGCAGCAGAAGAGTTTGAGAAGATGACTAA-ACTTGCCGAAGAAACCGGAAAACTCC 946
|||||||||||||||||||||||||||||| || | |||| ||||||| |||||||||
Sbjct 981 ACTAGCAGCAGAAGAGTTTGAGAAGATGACAAAGA-TTGCAGAAGAAAATAGAAAACTCC 1039
Query 947 TGTTGATAGCTAATGAGATGCATGAACAATGTTC-TGGTGGCGAGCCTATGCTCTTGGCT 1005
|| | ||||||| |||||||||||||| |||||| || ||| ||| ||||||||||||||
Sbjct 1040 TGGTCATAGCTACTGAGATGCATGAACTATGTTCCTG-TGGGGAGACTATGCTCTTGGCT 1098
Query 1006 TGA---G--TCTATGGGACATTCCTTGTAGCTC 1033
||| | ||||||||||||||||||||||||
Sbjct 1099 TGAATTGAATCTATGGGACATTCCTTGTAGCTC 1131
Score = 82.4 bits (44), Expect = 8e-15
Identities = 47/48 (98%), Gaps = 1/48 (2%)
Strand=Plus/Plus
Query 1 TTTAATTTCGAGAGCGTAAATAGAAGACAAAATAAAA-GCATAAATTC 47
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3 TTTAATTTCGAGAGCGTAAATAGAAGACAAAATAAAAAGCATAAATTC 50
Score = 63.9 bits (34), Expect = 3e-09
Identities = 39/41 (95%), Gaps = 2/41 (5%)
Strand=Plus/Plus
Query 46 TCCTCCCGCAGTCACACAACTGCGCAGAGCCAGaaaa-aaa 85
|||||||||||||||||||||||||||||||| |||| |||
Sbjct 90 TCCTCCCGCAGTCACACAACTGCGCAGAGCCA-AAAATAAA 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5