BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476412
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72750.1 | Symbols: ATTIM23-2, TIM23-2 | translocase inner m... 1829 0.0
AT1G17530.1 | Symbols: ATTIM23-1, TIM23-1 | translocase of inne... 424 1e-117
> AT1G72750.1 | Symbols: ATTIM23-2, TIM23-2 | translocase inner
membrane subunit 23-2 | chr1:27383365-27384524 FORWARD LENGTH=1160
Length=1160
Score = 1829 bits (990), Expect = 0.0
Identities = 1112/1168 (95%), Gaps = 19/1168 (2%)
Strand=Plus/Plus
Query 1 ACAACTGGACTGAGTCTTTCCCTAAAAACCCTAAACAGAGATTTTTTGTTTTGCTTT-GT 59
||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||| ||
Sbjct 1 ACAACTGGACTGAGTCTTTCCCTAAAAACCCTAAACATAGATTTTTAGTTTAG-TTTGGT 59
Query 60 TTCATTTCTCATTTCGGCAACCAACCAAACAAACATTCAGAGAGACACAACACAA-CACA 118
|||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||
Sbjct 60 TTCATTTCTCATTTCGGCAACC-A--AACCAAACATTCAGAGAGACACAACACAACCACA 116
Query 119 TCATCACACG-TT-tctct-tctctttcctctccgtcgtctctctctctATAGCCACCAT 175
|||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 117 TCATCACACGTTTCTCTCTCTCTCTTTCCTCTCCGTCGTCTCTCTCTCTCTAGCCACCAC 176
Query 176 CAAAATCCATAAAACCTAGACTTTTCTC-CCCAATCCATGGCGGCTAATAACAGATCCGA 234
|||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 177 CAAAATCCTTAAAACCTAGACTTTTCTCTTCC-ATCGATGGCGGCTAATAACAGATCCGA 235
Query 235 TCATGGGTCAGACGAAAACACAAGACTTTACAATCCTTACCAAAACTACGAAGTCCCAAT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCATGGGTCAGACGAAAACACAAGACTTTACAATCCTTACCAAAACTACGAAGTCCCAAT 295
Query 295 CAACAAATCTCAGTACCTTTACAAGCTTCCAACATCCCCTGAGTTTCTCTTCACGGAGGA 354
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 296 CAACAAATCTCAGTACCTTTACAAGCTTCCTACCTCCCCTGAGTTTCTCTTCACGGAGGA 355
Query 355 GTCTTTAAGGCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAACAGCTTA 414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGCTTTAAGGCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAACAGCTTA 415
Query 415 CCTCGGTGGATCCGTTGCCGGAGCTTCTGTTGGAGTTATCACTGGAGTCAAAAGCTTCGA 474
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 CCTCGGTGGCTCCGTTGCCGGAGCTTCTGTTGGAGTCATCACTGGAGTCAAAAGCTTCGA 475
Query 475 ATCTGGCGACACGACGAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGGTCAAACGGG 534
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 ATCTGGCGACACTACTAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGGTCAAACTGG 535
Query 535 TCGAACTTGGGGTAATAGGATTGGTATCATTGGGTTGGTTTACGCAGGGATCGAGAGTGG 594
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 536 TCGAACTTGGGGTAATCGGATTGGTATCATTGGATTGGTTTACGCAGGGATCGAGAGTGG 595
Query 595 TGTTGTGGCTGCCACGGATAGAGATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGGAC 654
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 TATTGTGGCTGCCACGGATAGAGATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGAAC 655
Query 655 CGGAGCTGTTTGTAGAGCGGCTAGAGGAGTGAGATCTGCGGCTGTGGCTGGTGCTCTTGG 714
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 656 CGGAGCTGTTTGTAGAGCGGCGAGAGGAGTGAGATCTGCAGCTGTAGCTGGTGCTCTTGG 715
Query 715 TGGACTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGCGGTATGTGCCCAT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGGACTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGCGGTATGTGCCCAT 775
Query 775 TTGAAGACTGCAAGAGTCTAATTGGAAGACTCTGTTTCG--TCATTTTTGGAATTTTTGA 832
||||||||||||||||||||||||| ||||||| ||||| || || ||| |||||||||
Sbjct 776 TTGAAGACTGCAAGAGTCTAATTGGCAGACTCTTTTTCGGGTCGTTGTTGAAATTTTTGA 835
Query 833 TAGGGGAAATGGTGAGAATTTGATAGGTTTGGTATGTCTTGGAATCATAAAAATGAAAAC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TAGGGGAAATGGTGAGAATTTGATAGGTTTGGTATGTCTTGGAATCATAAAAATGAAAAC 895
Query 893 TTTATTTGGTTTCTAGAGGTACAACAAGTCTGTATGTCTGTCAGTCATAATGCAGTTTCA 952
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 TTTATTTGGTTTCTAGAGGTACAACAAGTCTGTATGTCA---AGTCATAATGCAGTTTCA 952
Query 953 CTTTGAAGAATAACCTGCAAACCTTTTTTCTTATATTCATACTGATAAAATGTTTTACCG 1012
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 953 CTTTGAAGAATAACCTGCAAACCTTTTT-CTTATATTCATACTGATTAAATGTTTTGCCG 1011
Query 1013 ATTGGTAATTTAATTTGTCATGAGTGTGTTTCTTCTAGTTAGTTGTTTTATGTTTCTGTT 1072
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1012 ATTGGTAATTTAATTTGTCATGAGTGTGTTTGTTCTAGTTAGT-GTTTTATGTTTCTGTT 1070
Query 1073 TTTGATCAATGTTAACTCTTTCTTGATTCGTTGAGAAACGGATGTGTTGTATTAGATTTG 1132
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1071 TTTGATCAATGTTAACTCTTTCTTGATTCGTTGAGAAACTGATGTGTTGTATTACATTTG 1130
Query 1133 TAA-TGAAGCTCTTCTCCCAAGTTTTTT 1159
|| ||||||||||||| ||||||||||
Sbjct 1131 AAAATGAAGCTCTTCTCTCAAGTTTTTT 1158
> AT1G17530.1 | Symbols: ATTIM23-1, TIM23-1 | translocase of inner
mitochondrial membrane 23 | chr1:6027631-6028506 FORWARD
LENGTH=876
Length=876
Score = 424 bits (229), Expect = 1e-117
Identities = 454/561 (81%), Gaps = 21/561 (4%)
Strand=Plus/Plus
Query 230 TCCGATCATGGGTCAGACGAAAACACAAGACTTTACAATCCTTACCAAAACTACGAAGTC 289
|||||||||| || ||||||||||| | |||||| |||||||||| |||||| | |||
Sbjct 111 TCCGATCATGAATCCGACGAAAACACCCGTCTTTACCATCCTTACCAGAACTACCAGGTC 170
Query 290 CCAATCAACAAATCTCAGTACCTTTACAAGCTTCCAACATCCCCTGAGTTTCTCTTCACG 349
|| || |||||||||||| || ||||||||||| || || || || ||||| ||||||
Sbjct 171 CCGAT---CAAATCTCAGTATCTATACAAGCTTCCGACTTCTCCGGAATTTCTATTCACG 227
Query 350 GAGGAGTCT-TTAAGGCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAAC 408
|| |||||| | || ||| ||| |||| ||||| || ||||||||||||||||| || ||
Sbjct 228 GAAGAGTCTCTCAA-GCAGCGTCGATCATGGGGAGAAAATCTCACTTTCTACACAGGGAC 286
Query 409 AGCTTACCTCGGTGGATCCGTTGCCGGAGCTTCTG-TTGGAGT-TATCACTGG-AGTCAA 465
| ||| || | || || || ||||| ||||| | | ||| | | || |||| | ||||
Sbjct 287 GGGTTATCTAGCCGGCTCTGTAGCCGGTGCTTCAGCTGGGA-TCT-TCTCTGGTA-TCAA 343
Query 466 AAGCTTCGAATCTGGCGACACGACGAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGG 525
|| |||||| ||| |||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 344 GAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGATTTTGAATTCGTCTGG 403
Query 526 TCAAACGGGTCGAACTTGGGGTAATAGGATTGGTATCATTGGGTTGGTTTACGCAGGGAT 585
||| | ||||| ||||||||||||||| |||| || |||||||| | |||||||||||
Sbjct 404 TCAGGCAGGTCGTACTTGGGGTAATAGGGTTGGGATTGTTGGGTTGATCTACGCAGGGAT 463
Query 586 CGAGAGTGGTGTTGTGGCTGCCACGGAT-AGAGATGATGTTTGGACCAGTGTGGTGGCTG 644
||||||||||| ||||| | || ||| || || ||||||||||||||||| || ||||
Sbjct 464 TGAGAGTGGTGTGGTGGCGGTAACTGATAAG-GACGATGTTTGGACCAGTGTTGTCGCTG 522
Query 645 GTCTTGGG-ACCGGAGCTGT-TTGTAGAGCGGCTA-GAGGAGTGAGATCTGCGGCTGTGG 701
||| |||| || ||||| || || ||| || || | ||||||||||||||||||||||||
Sbjct 523 GTC-TGGGAACTGGAGCGGTCTT-TAGGGCAGC-ACGAGGAGTGAGATCTGCGGCTGTGG 579
Query 702 CTGGTGCTCTTGGTGGACTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGC 761
|||||||| |||| ||| |||||||||| || ||||| || |||||||| || | ||||
Sbjct 580 CTGGTGCTTTTGGCGGAATTGCGGCTGGTGCAGTTGTGGCGGGGAAGCAGGTTTTCAAGC 639
Query 762 GGTATG-TGCCCATTTGAAGA 781
|||||| | | ||| ||||||
Sbjct 640 GGTATGCT-CACATATGAAGA 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5