BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476413
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72760.1 | Symbols: | Protein kinase superfamily protein | ... 3278 0.0
> AT1G72760.1 | Symbols: | Protein kinase superfamily protein
| chr1:27385421-27388274 REVERSE LENGTH=2094
Length=2094
Score = 3278 bits (1775), Expect = 0.0
Identities = 1994/2100 (95%), Gaps = 13/2100 (1%)
Strand=Plus/Plus
Query 1 ATGTATGCAAGAAGAGTAAGAGGGACCTCGGCGGACTATGGCACAATCACGGCGATTGCC 60
|||| |||||||||||| ||| ||||||||| ||||||||||| ||||||||||| |||
Sbjct 1 ATGTCTGCAAGAAGAGTTAGAAGGACCTCGGAGGACTATGGCAGTATCACGGCGATCGCC 60
Query 61 ATTGATAAGGACAAGAACAGCCAACACGCCTTGAAATGGGCCGTTGAAAATATCGTTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 61 ATTGATAAGGACAAGAACAGCCAACACGCCTTGAAATGGGCCGTTGAAAATATTGTTGCT 120
Query 121 GATACTCCACAATGTGTCCTTCTCCACGTTCAACTGGGAAACACAGGAGGACATTTTCAT 180
||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 121 GATGCTCCACAATGTGTCCTTATCCACGTTCAACTAGGAGACACAGGAGGACATTTTCAT 180
Query 181 CAGGACAATCAGGACGAGGCGCATCAATTCTTTCTTCCTTTCAGAGGATTCTGCGCTCGA 240
|||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CAGGACAATCCGGACGAGGCACATGAATTCTTTCTTCCTTTCAGAGGATTCTGCGCTCGA 240
Query 241 AAAGGAATCATAGCAAAGGAGGTTATTCTTCATGATATTGACATCTCCAATGCTATTGTC 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGAATCATAGCAAAAGAGGTTATTCTTCATGATATTGACATCTCCAATGCTATTGTC 300
Query 301 AACTACATCACCAACAATTATTACATTGCAAATCTTGTTGTTGGCGCATCTGCACGCAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACTACATCACCAACAATTATTACATTGCAAATCTTGTTGTTGGCGCATCTGCACGCAAT 360
Query 361 TCCTTCCTCAAAAAGTTTAAGAGTCCAGATGTACCAACCACTCTGCTTACGACGACTCCA 420
|||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 TCCTTCCTTAAAAAGTTTCAGAGTCCAGATGTACCAACCACTCTGCTTAAGACGACTCCA 420
Query 421 GAGACTTGTGCTGTCTTTGTTGTGACCAAAGGTAGGCTTTTAAAAAGCAGATCCGCGAGT 480
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GAGACTTGTGCCGTCTTTGTTGTGACCAAAGGTAAGCTTTTAAAAAGCAGATCCGCGAGT 480
Query 481 CACCCTCATAAACTTTCCAGACAACAAAATCTCTCTTCTTTGTTGTATAACTCAACAAGC 540
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 CACCGTCATAAACTTTCCAGACAACAAAATCTCTCTTCTTTGTTGTACAACTCAACAA-- 538
Query 541 TCCGTTTCCAATGACTCTGATAGGGAATCATTATCATCACCTGTATCTACACAAACCAAC 600
| |||| ||||||||| || | |||| |||||||||||||||||||||||||||||
Sbjct 539 -AC---TCCATTGACTCTGACAGCGCATCAATATCATCACCTGTATCTACACAAACCAAC 594
Query 601 AAACCAAATTCAGATTTCTTCCAACCCAATTCACCTCGCATATCACCACCGCCATCTATG 660
|||||||||||| |||| |||||||| |||||||||||||| ||| |||||| |||||||
Sbjct 595 AAACCAAATTCAAATTTTTTCCAACCTAATTCACCTCGCATCTCAACACCGCAATCTATG 654
Query 661 AGTGAGATCTCTCAGTCAGAGACTGATAATGGCAGTAGTGATATGGTATCAACTGTGAGT 720
||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 655 AGTGAAATCTCTCAGTCAGAGACTGACAATGGAAGTTGTGATATGGTATCAACTGTGAGT 714
Query 721 TCTTACACCGTCTCTGAAAGTTCCACTACCATCGGAAGCTCGATCTCTTCAACGTCAACG 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 715 TCTTACACCGTCTCTGATAGTTCCACTACCATCGGAAGCTCGATCTCTTCAACTTCCACG 774
Query 781 GAAAGTCCACATG-CGGGAAATTTCGTGGAACAACAGAATCAAAATCTTGAAGCAGAGGT 839
|||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 775 GAAAGTCCACTTGTC-GGAAATTACGTGGAACAACAGAATCAAAATCTTGAAGCAGAGGT 833
Query 840 GAGGAAACTGAGACTGGAATTGAAGCAGTTTAAGATGGACAAAGACACTACAAACCAAAA 899
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 834 GAGGAGACTGAGACTGGAATTGAAGCAGTTTAACAAGGACAAAGACACTACAAACCAAAA 893
Query 900 CGAAAACTCCCAAGAAAGCCCAAGGTCAGATGAAAAAATAGAGCTGCCTAGAGCATTGTC 959
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 894 AGAAAACTCCCAAGAAACCCCATGGTCAGATGAAAAAATAGAGCTGCCTAGAGCATTGTC 953
Query 960 TGAGAGGGAAAAGCAGAAAAAGCAG--T-CTGCAATCCAAGCCGCTGAAATAGCAAAGCG 1016
||| ||||||| |||||||| |||| | ||||| ||||||| |||||||||||||||||
Sbjct 954 TGATAGGGAAACGCAGAAAACGCAGTCTGCTGCATTCCAAGCAGCTGAAATAGCAAAGCG 1013
Query 1017 CATAGCGAAAATGGAGAGCCAAAAGATAAGATTACTAGAGATGCAAGCCAATTTGGACAA 1076
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1014 CATAGCGAAAATGGAGAGCCAAAAGAGAAGATTACTTGAGATGCAAGCCAATTTGGACAA 1073
Query 1077 ACAGAAGATGGTCACTACGGTGTCTTACAGACGTTATAGTATCAAAGATGTTGAAGGTGC 1136
||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1074 ACAGATGATGTTCACAACGGTTTCTTACAGACGTTATAGTATCAAAGATGTTGAAGATGC 1133
Query 1137 AACCTATGGTTTTTCTGATGCTCTAAAGATTGGGGAAGGAGGTTATGGACCTGTTTACAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AACCTATGGTTTTTCTGATGCTCTAAAGATTGGGGAAGGAGGTTATGGACCTGTTTACAA 1193
Query 1197 AGCTGTTCTCGATTACACTCCTGTCGCCATTAAAATCTTGAAGTCGGGTATCACAGAGGG 1256
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGCTGTCCTCGATTACACTTCTGTCGCCATTAAAATCTTGAAGTCGGGTATCACAGAGGG 1253
Query 1257 ACTAAAACAGTTCCGACAAGAGATTGAGGTTCTGAGTAGCATGAGGCACCCTAATATGGT 1316
||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1254 ACTGAAACAGTTCCAACAAGAGATTGAGGTTCTTAGTAGCATGAGGCACCCTAATATGGT 1313
Query 1317 GATCCTTCTCGGTGCATGTCCCGAGTATGGTTGTCTTGTATATGAGTATATGGAAAATGG 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AATCCTTCTCGGTGCATGTCCCGAGTATGGTTGTCTTGTATATGAGTATATGGAAAATGG 1373
Query 1377 AACACTTGAAGATCGCCTCTTCTGCAAAAACAATACACCCCCACTTTCATGGAGAGCAAG 1436
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1374 AACACTCGAAGATCGCCTCTTCTGCAAAAACAACACACCCCCACTTTCATGGAGAGCAAG 1433
Query 1437 ATTCAGAATCGCTTCTGAGATTGCCACAGGACTTCTTTTCCTTCACCAGGCAAAACCTGA 1496
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1434 GTTCAGAATCGCTTCTGAGATTGCCACAGGTCTTCTTTTCCTTCACCAGGCAAAACCTGA 1493
Query 1497 GCCCTTAGTTCATCGTGATCTGAAGCCAGCAAACATTCTACTTGATAAACATCTCACTAG 1556
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1494 GCCCCTAGTTCACCGTGATCTGAAGCCAGCAAACATTCTACTCGATAAACATCTCACTTG 1553
Query 1557 CAAAATCAGTGATGTCGGTCTAGCTCGCTTGGTACCTCCCT-CTGTGTCTGATAGCTACA 1615
||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||
Sbjct 1554 CAAAATCAGTGATGTCGGTCTAGCTCGCTTGGTACCT-CCTGCTGTGGCTGATACCTACA 1612
Query 1616 GTAACTATCACATGACCTCTGCAGCCGGTACATTTTGTTACATTGACCCTGAGTATCAGC 1675
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 GTAACTATCACATGACTTCTGCAGCCGGTACATTTTGTTACATTGACCCTGAGTATCAGC 1672
Query 1676 AAACCGGAATGCTTGGAGTGAAATCTGACGTCTACTCTTTTGGTGTGGTGCTTCTGCAAA 1735
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 1673 AAACCGGAATGCTTGGAGTGAAATCTGACCTCTATTCTTTTGGTGTGGTGCTACTGCAAA 1732
Query 1736 TCATAACAGCCCAACCAGCAATGGGGTTAGGCCATAAAGTAGAGATGGCTATTGAAAATA 1795
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1733 TCATAACAGCCCAACCAGCAATGGGGTTAGGCCATAAAGTAGAGATGGCGGTTGAAAATA 1792
Query 1796 ATAATCTGAGAGAAATTTTGGATCCAACTGTATCAGAATGGCCTGAAGAAGAGACTCTGG 1855
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1793 ATAATCTGAGAGAAATTTTGGATCCAACAGTATCAGAATGGCCTGAAGAAGAGACTCTGG 1852
Query 1856 AGTTGGCTAAATTGGCTTTGCAGTGTTGTGAACTGAGGAAAAAGGATAGACCTGATCTTG 1915
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1853 AGTTGGCTAAATTGGCTTTACAATGTTGTGAACTGAGGAAAAAGGACAGACCTGATCTTG 1912
Query 1916 CCTTAGTTCTGTTACCAGCTCTGAACAGGCTTAAAGAGTTTGCTACAGAGGATCATGAAC 1975
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1913 CCTTAGTTCTGTTACCAGCTCTGAACAGGCTTAAAGAGTTTGCAACAGAGGATCATGAAC 1972
Query 1976 GTATTCAGGATAGAACATCTCATGTGTCACATGAACACAATTCAGTTCCACTTTCCCCGA 2035
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1973 GTATTCAGGATAGAACATCTCATGTGTCACATGAACACAATTCAGTTCCGCTTTCCCCGA 2032
Query 2036 TTCCTTCCTCTCAGGTTAGTTTCTTAGAACCGTTCTTTTTAAGGGATCTTAGCTGCAAAT 2095
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 2033 TTCCTTCCTCTCAGGTTAGTTTCTTAGAACCATTCTTTTTAAGGGATATTAGCTGCAAAT 2092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5