BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476416
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72790.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2601 0.0
> AT1G72790.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:27394747-27396799 FORWARD LENGTH=2053
Length=2053
Score = 2601 bits (1408), Expect = 0.0
Identities = 1681/1810 (93%), Gaps = 30/1810 (2%)
Strand=Plus/Plus
Query 43 AGAAAGAGTATGGAAGAAGAAGATGGAGACGCGTCTACGCCGTTTTGGCTTCAATCACGC 102
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 93 AGAAAGAGTATGGAAGAAGATGATGGAGACGCGTCTACGCCGTTTTGGCTTCAATCACGC 152
Query 103 CGCAATAACACTTACTTCCGCCGCACTGCAAGTCTCGGCGGCCGTGCAACCACCGTCGCC 162
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 153 CGCAATAACACTTACTTCCGCCGCACTGCAAGTCTCGGTGGCCGTACAACCACCATCGCC 212
Query 163 ACTCAAATATTCTTCGCCGGGACAGCTGCAATCCTTATAGTCTTCTTCATTATCCCTCCT 222
|||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||
Sbjct 213 ACTCAAATATTCTTCGCCGGAACAGCTGCAATCCTCATAGTCGTCTTCATTATCCCTCCT 272
Query 223 CTCTTTTCCTCTGTTTCACAAG-TTTTCCGACCTCATTTGGTCCGTAAAAGCTGGGATTA 281
|||| ||||||||||| | || |||||||||||||||| ||||||||||||||||||||
Sbjct 273 TTCTTCTCCTCTGTTTCTC-AGATTTTCCGACCTCATTTAGTCCGTAAAAGCTGGGATTA 331
Query 282 TCTCAACTTCGTTCTCGTCCTTTTCGCCGTCCTTTGCGGCTTCCTCAGCCGCAACACCAA 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TCTCAACTTCGTTCTCGTCCTTTTCGCCGTCCTTTGCGGCTTCCTCAGCCGCAACACCAA 391
Query 342 TAATGACGAAACCAATCATAACAAAGAAGAAGACATTAGTAACAAATTCTCGAACT-CAC 400
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||| || |||
Sbjct 392 TAATGACGAATCCAATCATCACAAAGAAGAAGACATTCGTAACAAATTCTCGA-CTTCAC 450
Query 401 CTTCGATCATCGATCGAGGAGGTCGTGTATCTAACAGTGC--CA-CGCCTCGTTATTGGA 457
| ||||| || |||||| || |||||||||||||||||| || |||| ||||||||||
Sbjct 451 CATCGATTATTGATCGAAGAAGTCGTGTATCTAACAGTGGTACAACGCCGCGTTATTGGA 510
Query 458 TCGATGATCGCGGTGGTGGCGGCGGTGATCAGACGGTGTACAAGAGGTTTAGTAGATTAC 517
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 511 ACGATGATCGCGGTGGTGGCGGCGGTGATCAAACGGTGTACAAGAGGTTTAGTAGATTAC 570
Query 518 GGAGTGTTAGCTCGTATCCAGATCTGAGGCTCCGGGAATACGAAGCCGATGAACGGTGGA 577
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GAAGTGTTAGCTCGTATCCAGATCTGAGGCTCCGGGAATACGAAGCCGATGAACGGTGGA 630
Query 578 GATTTTACGATGATACACGTGTAAGTCAATGTCGTTACGAAGATGTAGATCCGATCTATC 637
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 631 GATTCTACGATGATACACGTGTAAGTCAATGCCGTTATGAAGATGTAGATCCGATCTATC 690
Query 638 CAAATCAAAGTTACAGAAACTGGCAAGAGGAAGTTAAACCACCGCCGGAAGATGTAGATC 697
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 691 CAAATCAAAGTTACAGAAACTGGCATGAGGAAGGTAAACCACCGCCGGAAGATGTAGATC 750
Query 698 AAACAGAGGACGGTGGTAATGAAGGAGGAGGAAAGGTCCATAGCGGCGGTTTTGAAACTG 757
||||||||||||||| ||||| || |||| | ||||||| || |||||||| |||||||
Sbjct 751 AAACAGAGGACGGTGATAATGGAGAAGGAAGTAAGGTCCGTAACGGCGGTTCGGAAACTG 810
Query 758 AGAAAGTTGAGGTCGTTGAGACGGCGGAAGCTGAAGTAGTTGAAGAGCTAACAGTGCCTT 817
||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 811 AGAAAGTTGAGGTGGTTGCGACGGCGGAAGCTGAAGTAGTAGAAGAGCTAAAAGTGCCTT 870
Query 818 CTGCTCCGCCGTATATTCCGTCTCCTCCGCCGTCTCCGCCACGTCCTCCACCACCTAAGC 877
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 871 CTGCTCCGCCGTATATTCCGTCTCCTCCGCCGTCTCCGCCACGTCCTCCACCAGCGAAGC 930
Query 878 AAGCGAAGAGGAAGACTAAAAGAGTGTACCAAGATGTTCCTCCAAAGGAAGAGAATAATG 937
|||||||||| |||||||| |||||||||||||||||| ||||| |||||||||| || |
Sbjct 931 AAGCGAAGAGAAAGACTAATAGAGTGTACCAAGATGTTTCTCCACAGGAAGAGAAGAAAG 990
Query 938 AGAGAGGTGATTTTGTAGCGGCGACGCCGATGACTCCGATTCCACCTCCGGCGACTGTGT 997
| |||| ||||||||||||| ||||| || | | |||||||||||||||||||||||
Sbjct 991 AAAGAGATGATTTTGTAGCGACGACGACG----C-C-GATTCCACCTCCGGCGACTGTGT 1044
Query 998 ATCAAAAGAGCAATAAACAGGAGAAGAAGAAAGGCGGAGCAACTAAGGATTTTCTGATTG 1057
|||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||
Sbjct 1045 ATCAAAAGAGCAATAAACAGGAGAAGAAGAAAGGAGGAGCAACGAAAGACTTTCTGATTG 1104
Query 1058 CGTTACGGAGGAAGAAGAAGAAGCAGAGACAACAGAGCATCGATGGACTCGATTTACTCT 1117
|||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1105 CGTTACGGAGAAAGAAGAAGAAGCAGAGACAACAGAGCATCGATGGCCTCGATCTCCTCT 1164
Query 1118 TCGGCTCCGATCCTCCATTGGTCTATTCACCACCACCGCCGCCTCCGCCTCCACCACCTT 1177
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1165 TCGGCTCCGATCCTCCATTGGTCTATTCACCACCACCGCCGCCGCCTCCTCCACCACCTT 1224
Query 1178 TCTTCCAAGGGCTATTCTCATCCaaaaaaggtaaaggcaaaaaaaaCAATTCAAATCCAC 1237
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1225 TCTTCCAAGGGCTTTTCTCATCCAAAAAAGGTAAAAGCAAAAAAAACAATTCAAATCCAC 1284
Query 1238 CGCCTCCTCCTCCTCCGCCACCACCTGAACGGGGATATGAATCACGCGCATCAATGACGA 1297
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1285 CGCCTCCTCCTCCTCCACCACCACCTGAACGGAGATATGAATCACGCGCATCAACCTCGA 1344
Query 1298 AGATTCGGAAAGCTCCGGTGGAATCACGGACATCTAAACCAAATCCGCCAGCTAGAGTAA 1357
|| | || |||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1345 AGCTCCGAAAAGCTCCGGTGGAATCACGGACATCCAAACCAAATCCGCCAGCTAAAGTAA 1404
Query 1358 CTCAATTCGTAGGCACAGGAAGCGAATCGCCATTGATGCCGATCCCGCCGCCGCCTCCTC 1417
|||||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 1405 CTCAATACGTAGGCACAGGAAGCGAATCACCACTAATGCCGATCCCGCCGCCGCCTCCTC 1464
Query 1418 CCCCGCCGTTTAAAATGCCGGCTTGGAAATTCGTGAAGCGTGGAGATTACGTCAGGATGG 1477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 CTCCGCCGTTTAAAATGCCGGCTTGGAAATTCGTGAAGCGTGGAGATTACGTCAGGATGG 1524
Query 1478 CTAGTGACATCAGCATAAGCTCCGACGAACCCGATGATCCCGACGTAGCTCAATCAGCTG 1537
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 1525 CTAGTGACATCAGCATAAGCTCCGACGAACCTGATGATCCGGATGTAGCTCAATCAGCTG 1584
Query 1538 -AAGGTAAGGTCGCCGCCGGGAGTATGTTCTGTCCAAGCCCCGACGTAGATACCAAAGCC 1596
||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1585 GAAG-TAAGGAGGCCGCCGGGAGTATGTTCTGTCCGAGCCCCGACGTAGATACCAAAGCC 1643
Query 1597 GATGATTTCATCGCCAGATTCAGAGCTGGACTCAAATTGGAGAAGATGAACTCTGTGAAA 1656
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1644 GATGATTTCATCGCAAGATTCAGAGCCGGACTCAAATTGGAGAAGATGAACTCTGTGAAA 1703
Query 1657 AGAGGGAGATCCAATTTAGGACCCGAACCCGGACTTAATGAATCCGGGTCTTAATAAACG 1716
|||||||||||||||||||||||||||||||||||| |||||||||| |||| | | ||
Sbjct 1704 AGAGGGAGATCCAATTTAGGACCCGAACCCGGACTTCATGAATCCGGATCTTCA-A--CG 1760
Query 1717 GGTAGTGGTTATAGGCCTAGCCCAAGCGTATAGTGGTTatttcttttggattttgcattt 1776
||| | ||||||| ||||||||||||||| || |||||||||| ||||||| ||||
Sbjct 1761 GGT--T----ATAGGCCCAGCCCAAGCGTATAGAGGCTATTTCTTTTAGATTTTGGATTT 1814
Query 1777 ttggattac-actgtgttgggttttt---cct-acttttgttta-attttcttatacgta 1830
||||||||| |||||||||| ||||| ||| ||||||||||| | |||||||||||||
Sbjct 1815 TTGGATTACTACTGTGTTGGTTTTTTTTACCTTACTTTTGTTTAGACTTTCTTATACGTA 1874
Query 1831 attttgtggt 1840
||||||||||
Sbjct 1875 ATTTTGTGGT 1884
Score = 62.1 bits (33), Expect = 2e-08
Identities = 39/42 (93%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 AACACATTACAGCATCGTAAGCCAACCACTCCCAAGCTAAAA 42
||||||||||||||||||||||||||||||| || ||||||
Sbjct 22 AACACATTACAGCATCGTAAGCCAACCACTCTTAAACTAAAA 63
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97439257845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5