BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476418
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72820.1 | Symbols: | Mitochondrial substrate carrier famil... 2796 0.0
> AT1G72820.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr1:27402878-27404673 FORWARD LENGTH=1796
Length=1796
Score = 2796 bits (1514), Expect = 0.0
Identities = 1657/1723 (96%), Gaps = 21/1723 (1%)
Strand=Plus/Plus
Query 52 CTC-TCT-ACATCGATCTCGTATTGGTGCTTATTGGATATCTCCGGCGAAGGAAACGGGT 109
||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 73 CTCTTCTAACATCGGTCTTGTATTGGTGCTTATTGGATATCTCCGGCGAAGGAAACGAGT 132
Query 110 TTCGCGGTTAGA-GTTTCTTTATCGCTTACCGGCGACGATGATCGTATCTTCGGTAAGGT 168
|||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 133 TTCGCGGTTAGATTTTTCTTTATCGCTTACCGGCGAGGATGATCGTTTCTTCGGTAAGGT 192
Query 169 CGATTAATCGGTTCTGTTTTCGAAGATGTTGTTGTTAGAGTTAGATCCGCATGGTTTTGG 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CGATTAATCGGTTCTGTTTTCGAAGATGTTGTTGTTAGAGTTAGATCCGCATGGTTTTGG 252
Query 229 TGATCGTTTTGGATCGAAGACGTGGTTCCACAGACGCAAAAAATGCTGTCGTCTCTTGCT 288
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 253 TGATCGTTTTGGATCGAAGACGTGGTTCCACAGACGCAAAAAATGCCGTCGTCTCTTGCT 312
Query 289 TTGAGATTTGTCTTCTGAAATCTTTCCTCTTTTGTGCTCGTTGAATCC------------ 336
|||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 313 TTGAGATTTGGCTTCTGAAATCTTTCCTCTTTCGTTCTCGTTGAATCCTAATTTTTGTTT 372
Query 337 --t-ttttttAGAAATTTTTGGTC-TTCGAATCCTGGGGATAGGTTACAGTCTCCGATTG 392
| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 373 TGTCTTTTTTAGAAATTTTTGGTCTTTCTAATCCTGGGGATAGGTTACAGTCTCCGATTG 432
Query 393 TAAATAGAAATTTGCGGCGTCGTTAGGAAAAGTTGTACAGATAGAGATTGAACTCTGAAA 452
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 433 TAAATAGAAATTTGCGGCGAGGTTAGGAAAAGTTGTACAGATAGAGATTGAGCTCTGAAA 492
Query 453 CACATCTCAGGAACATTTTTTGTTTCTTGTATAAAAAAGttttttttttttGT-TTTGTT 511
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||| | ||||
Sbjct 493 CACATCTCAGGAACATTTTTTGTTCCTTGTTTAAAAAAG-TTTTTTTTTTTGTGTGTGTT 551
Query 512 TCTCTGGGTTGGTTAGAAAGTGGCGAAGATGAATCTGGGTGCGGCCGAGGAAGAATCGGC 571
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 552 TCTCTGGGTTGGTTAGAAAGTGGCGAAGATGAATTTGGGTGCGGCCGAGGAAGAATCGGC 611
Query 572 TCAGGAGATTCATTTACCAGCTGATATCAATTGGGAGATGCTTGATAAATCCAAGTTTTT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TCAGGAGATTCATTTACCAGCTGATATCAATTGGGAGATGCTTGATAAATCCAAGTTTTT 671
Query 632 CGTTTTAGGCGCTGCTTTGTTTTCAGGGGTATCTGGAGCTCTTTATCCTGCGGTTTTGAT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 CGTTTTAGGCGCTGCTTTGTTTTCAGGGGTATCTGGAGCTCTTTATCCTGCGGTTTTGAT 731
Query 692 GAAAACTCGGCAACAAGTTTGTCATTCGCAAGGCTCTTGTATCAGAACTGCGTTTACCCT 751
|||||||||||||||||| |||||||||||||| |||||||| | |||||||||||| ||
Sbjct 732 GAAAACTCGGCAACAAGTGTGTCATTCGCAAGGTTCTTGTATTAAAACTGCGTTTACTCT 791
Query 752 TGTGAGACACGAAGGTTTAAGGGGATTGTACAGAGGATTTGGTACTTCTTTGATGGGAAC 811
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 792 TGTGAGACATGAAGGTTTAAGGGGATTGTACAGAGGATTTGGAACTTCTTTGATGGGAAC 851
Query 812 TATCCCTGCTCGTGCTTTGTACATGACTGCCTTGGAGGTTACTAAGAGTAACGTAGGCTC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TATCCCTGCTCGTGCTTTGTACATGACTGCCTTGGAGGTTACTAAGAGTAACGTAGGCTC 911
Query 872 TGCTGCTGTCAGCTTGGGGTTGACAGAGGCTAAAGCTGCTGCAGTTGCTAATGCGGTTGG 931
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 912 TGCTGCTGTCAGCTTGGGGTTGACAGAGGCTAAAGCTGCTGCTGTTGCTAATGCGGTTGG 971
Query 932 AGGTTTGAGTGCTGCCATGGCTGCACAGCTTGTTTGGACTCCTGTTGATGTGGTTAGCCA 991
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 AGGTTTGAGTGCTGCGATGGCTGCACAGCTTGTTTGGACTCCTGTTGATGTGGTTAGCCA 1031
Query 992 AAGGCTTATGGTTCAAGGAAGTGCCGGTCTTGTCAATGCATCGAGGTGTAATTATGTTAA 1051
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1032 AAGGCTTATGGTTCAAGGAAGTGCTGGTCTTGTTAATGCATCAAGGTGTAATTATGTTAA 1091
Query 1052 CGGGTTTGATGCATTTAGAAAGATTGTTCGCGCTGATGGACCTAAGGGGTTATACAGAGG 1111
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1092 CGGGTTTGATGCATTTAGAAAGATCGTTCGCGCTGATGGACCGAAGGGGTTATACAGAGG 1151
Query 1112 GTTTGGCATATCGATTCTGACTTATGCCCCGTCTAATGCAGTTTGGTGGGCGTCTTACTC 1171
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1152 GTTTGGGATATCGATTCTGACTTATGCGCCGTCTAATGCTGTTTGGTGGGCGTCTTACTC 1211
Query 1172 TGTTGCACAGCGGATGGTTTGGGGTGGAATTGGGTGTTATGTCTGTAAGAAAGACGAAGA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 TGTTGCACAGCGGATGGTTTGGGGTGGAATTGGGTGTTATGTCTGTAAGAAAGACGAAGA 1271
Query 1232 AATTGGGAACAATAGTACCACGATGAAACCAGACTCTAAAACGATAATGGCTGTTCAAGG 1291
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1272 AAGCGGGAACAATAGTACCACGATGAAACCAGATTCTAAAACGATAATGGCTGTTCAAGG 1331
Query 1292 AGTTAGTGCTGCGATTGCTGGAAGTGTTTCTGCTTTGATTACAATGCCACTCGACACAAT 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 AGTTAGTGCTGCGATTGCTGGAAGTGTTTCTGCTTTGATTACAATGCCACTCGACACAAT 1391
Query 1352 CAAGACGAGATTGCAGGTTCTTGATGGGGAAGATAGTAGTAACAACGGGAAGCGTGGACC 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 CAAGACGAGATTGCAGGTTCTTGATGGGGAAGATAGTAGTAACAACGGGAAGCGTGGACC 1451
Query 1412 GAGTATTGGACAGACTGTAAGAAACTTGGTTAGAGAAGGTGGATGGACAGCTTGTTATAG 1471
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1452 GAGTATTGGACAGACTGTAAGAAACTTGGTTAGAGAAGGTGGATGGACGGCTTGTTATAG 1511
Query 1472 AGGATTGGGACCAAGATGTGCTTCAATGTCAATGTCTGCAACAACTATGATCACTACCTA 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 AGGATTGGGACCAAGATGTGCTTCAATGTCAATGTCTGCAACAACTATGATCACTACCTA 1571
Query 1532 CGAGTTCTTGAAACGGCTTTCTGCTAAGAACCATGACGGGTTTTATTCTAAATCATAGTG 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CGAGTTCTTGAAACGGCTTTCTGCTAAGAACCATGACGGGTTTTATTCTAAATCATAGTG 1631
Query 1592 ATAACAACTTAGAATCCACATAGAAGAATCTTTTATGGAAATGTCTCTAGTTTTCTTACT 1651
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 ATAACAACTGGGAATCCACATAGAAGAATCTTTTATGGAAATGTCTCTAGTTTTCTTACT 1691
Query 1652 TATCTTGTTCTTTGTCTAGCTGTTCTGCTATTTCATTTGTTTCCAGTCATATGTAAGGAA 1711
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TATCTTGTTCTTTATCTAGCTCTTCTGCTATTTCATTTGTTTCCAGTCATATGTAAGGAA 1751
Query 1712 TGTGTTAAATTCAGTTGTTTCTAAATAAATAAATGTTATTTCC 1754
|||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1752 TGTGTTAAATTCAGTTGTTTTTAAATAAATAAATGTTCTTTCC 1794
Score = 100 bits (54), Expect = 4e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1 TAACAGTATAACTGTATAAGGTCTCATTTGCGTGTGCTCTCGTCGCGATTACTCTCT 57
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TAACAGTATAACTGTATAAGGTCTCATTTTCGTGTGCTCTCGTCGCGATTACTCTCT 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86746541760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5