BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476423
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72880.2 | Symbols: | Survival protein SurE-like phosphatas... 2322 0.0
> AT1G72880.2 | Symbols: | Survival protein SurE-like phosphatase/nucleotidase
| chr1:27423385-27426135 REVERSE LENGTH=1565
Length=1565
Score = 2322 bits (1257), Expect = 0.0
Identities = 1394/1459 (96%), Gaps = 13/1459 (1%)
Strand=Plus/Plus
Query 198 TTACGATGACCTCGAAGAACAATGGTTTGTCTGCCGCGCTTGTATCGAATCTCCAAGATG 257
||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 110 TTACGATGACCTCGAAGAACAATGGTTTGTCAGCTGCGCTCGTTTCGAATCTCCAAGATG 169
Query 258 TGCTTTCGAAGAGAAAAGTAGGGAACGAGGAAAAAGTT-GAGAGCGATGGATCGGCGGAG 316
|||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||
Sbjct 170 TGCTTTCGAAGAGAAAAGTAGGAAATGAGGAAAAAGTTGGA-AGCGATGGATCGGCGGAG 228
Query 317 GAGGCTCCGTCTACATCTGATTCCGTTGATGTTGCGGCGGTGGAGGAAGAGATCGATGAC 376
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 229 GAGGCTCCGTCTACATCTGATTCCGTTGATGTTGCGTCGGTGGAGGAAGAGATCGATGAT 288
Query 377 TCTAGACCTATTGTTTTAGTTACGAATGGTGATGGGATTGATTCGCCAGGGCTTGTTTCT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TCTAGACCTATTGTTTTAGTTACGAATGGTGATGGGATTGATTCGCCAGGGCTTGTTTCT 348
Query 437 CTCGTTGAGGCTTTGGTTCTTGAAGGGCTTTACAATGTTCATGTTTGTGCTCCTCAAACG 496
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 349 CTCGTTGAGGCTTTGGTTCTCGAAGGGCTTTACAATGTTCATGTTTGTGCTCCTCAAACG 408
Query 497 GATAAATCAGCTTCTGCTCATTCTACGACTCCTGGAGAAACAATCGCTGTAAGCTCTGTT 556
|| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 409 GACAAATCAGCCTCTGCTCATTCTACTACTCCAGGAGAAACAATCGCTGTAAGCTCTG-T 467
Query 557 AGTA-TCAAAGGTGCCACAGCCTTTGAAGTTTCAGGGACTCCTGTGGACTGCATCTCATT 615
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AAAACTCAAAGGTGCCACAGCCTTTGAAGTTTCAGGGACTCCTGTGGACTGCATCTCATT 527
Query 616 AGGATTATCTGGAGCGCTTTTTGCTTGGTCAAAACC-AGTACTGGTAATTAGTGGAATCA 674
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 528 AGGATTATCTGGAGCGCTTTTTGCTTGGTCAAAACCTA-TACTGGTAATTAGTGGAATTA 586
Query 675 ATCAGGGTTCAAGCTGTGGCCATCAAATGTTCTATTCAGGTGCAGTTGCTGGAGCCAGGG 734
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 587 ATCAGGGATCAAGCTGTGGCCATCAAATGTTCTATTCAGGTGCAGTTGCTGGAGGCAGGG 646
Query 735 AGGCTTTGATTTCTGGAGTACCCTCTTTGTCAATATCGTTGAACTGGAAGAAAGATGAAA 794
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 647 AGGCTTTGATTTCTGGGGTACCCTCTTTGTCAATATCGTTGAATTGGAAGAAAAATGAAA 706
Query 795 GCCAAGAAAGTCACTTTAAGGATGCTGTTGGTGTCTGCTTACCTTTGATAAACGCAACTA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GCCAAGAAAGTCACTTTAAGGATGCTGTTGGTGTCTGCTTACCTTTGATAAACGCAACTA 766
Query 855 TCAGAGACATTGCAAAAGGAGTTTTCCCTAAAGACTGCTCTCTCAATATAGAAATTCCAA 914
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 767 TCAGAGACATTGCGAAAGGAGTTTTCCCTAAAGACTGCTCTCTCAACATAGAAATTCCAA 826
Query 915 CATCACCCTCATCAAACAAGGGTTTCAAGGTAACAAAACAAAGCATGTGGAGGCAG-AGT 973
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 827 CATCACCCTCATCAAACAAGGGTTTCAAGGTAACAAAGCAAAGCATGTGGAGGCAGTA-T 885
Query 974 CCTAGTTGGCAAGCTGTTTCAGCTCACCGTCACCCTGGTGCTGGGAATTTCATGTCCAAC 1033
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 886 CCTAGTTGGCAAGCTGTTTCAGCTAATCGTCACCCTGGTGCTGGGAATTTCATGTCCAAC 945
Query 1034 CAACAAAGTCTAGGAGCTCAGCTTGCCCAGCTTGGCAGGGATGCTTCAGCTGCTGGGGCA 1093
||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 946 CAACAAAGTTTAGGGGCTCAGCTTGCCCAGCTTGGCAGGGATGCTTCAGCGGCTGGGGCG 1005
Query 1094 GCTCGTCGTTTTACCACTCAGAAGAAGAGTATTGTGGAGATTGAATCGGTTGGTGTTGCT 1153
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1006 GCTCGTCGTTTTACCACTCAGAAGAAGAGTATTGTAGAAATTGAATCAGTTGGTGTTGCT 1065
Query 1154 GGTAAAACTGATACCCGTGTTAAGAAATTCTTTCGTCTAGAGTTTCTTGCTAAAGAACAA 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGTAAAACTGATACCCGTGTTAAGAAATTCTTTCGTCTAGAGTTTCTTGCTAAAGAACAA 1125
Query 1214 GAACACACAGATGAAGATTTGGATGTCAAGGCTCTAGAAGATGGTTTCGTTTCTGTGACT 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1126 GAACACACAGATGAAGATTTGGATGTCAAGGCTCTAGAAGATGGTTTCGTTTCCGTGACT 1185
Query 1274 CCATTGTCTATACTTCCAAATATTGATTCGGACACTCAAGCCGCAGCATCAGAATGGATC 1333
||||| ||| | |||||||| | ||||| || |||||||||||||||||||||||||||
Sbjct 1186 CCATTTTCTCTCCTTCCAAAAACGGATTCAGAAACTCAAGCCGCAGCATCAGAATGGATC 1245
Query 1334 TCCAAAGCCCTTTAACTCTGATCAATGAAAAAGGTCATAATCGTAAATTATGTTACATGA 1393
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1246 TCCAAAGCCCTT-AACTCTGATCAATGAAAAAGGTCATACTCGTAAATTATGTTACATGA 1304
Query 1394 TTTGGCCAAAACTCTCCCAACAAATCTGATT-ACTGGATTCTGCA-TTTGTTTGTTCTTG 1451
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1305 TTTGGCCAAAACTCTCCCAACAAATCTGATTTACTGGATTCTGCAATTTGTTTGTTCTTG 1364
Query 1452 TGGTCTTGTTGTCAT-TTAACCCTTTTGTTTATTTTATTTATTTGATCTCCCTACAAGTA 1510
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TGGTCTTGTTGTCATCTTAACCCTTTTGTTTATTTTATTTATTTGATCTCCCTACAAGTC 1424
Query 1511 TGGGTTGCTCTTGTTGGCTTGTTTGTTTGTCAGTAGtttttttA-CCTTTGTAATTGGAA 1569
|||||||||||||||||||| ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 1425 TGGGTTGCTCTTGTTGGCTTATTTGTTTGTCACTAGCTGTTTTAACCTTTGTAATCGGAA 1484
Query 1570 AAAAGGTCGGTCTGCTTTTTCTCTATTTCGAATTCATACAATTTGTATACCTTTTGATTG 1629
||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1485 AAAAGGTCGGTCTGCGTTTTCTCTATTTCGAATTCAGACAATTTGTAAACCTTTTGATTG 1544
Query 1630 AGAAGAACGATCTTTTACC 1648
|||||||||||||||||||
Sbjct 1545 AGAAGAACGATCTTTTACC 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81425283990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5