BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476427
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72980.1 | Symbols: LBD7 | LOB domain-containing protein 7 |... 852 0.0
> AT1G72980.1 | Symbols: LBD7 | LOB domain-containing protein 7
| chr1:27456043-27456873 REVERSE LENGTH=831
Length=831
Score = 852 bits (461), Expect = 0.0
Identities = 569/620 (92%), Gaps = 12/620 (2%)
Strand=Plus/Plus
Query 1 ATGTCCTTAAGCACCTTATCCGGTGGTTCCACCACAGCTTGCGCTGCCTGCAAATACCAA 60
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 3 ATGTCCTTAAGCACTTTCTCCGGTGGTTCCACCACAGCTTGCGCTGCCTGCAAACACCAA 62
Query 61 AGAAAAAAGTGCAAGAAAAACTGTCTTCTCGCTCCTTATTTCCCACAAGATCGCTCAAAT 120
||||||||||| |||||||||||| ||||||||| |||||||||||||||| || |||||
Sbjct 63 AGAAAAAAGTGTAAGAAAAACTGTATTCTCGCTCGTTATTTCCCACAAGATGGCACAAAT 122
Query 121 CAGTTTCTAAACGCTCATAAACTCTTTGGAGTAAGCAACATCACCAAGATGCTCAAAG-G 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 123 AAGTTTCTAAACGCTCATAAACTGTTTGGAGTAAGCAACATCACCAAGATGCTC-AAGAG 181
Query 180 AATCGAAGAATCTCAACGAGACATCGCTATGGAGAATCTTATCTACCACGCTAATGCTCG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AATCGAAGAATCTCAACGAGACATCGCTATGGAGAATCTTATCTACCACGCTAATGCTCG 241
Query 240 TGCCCTAGATCCAGTAGGAGGGGTTTACAGTACTATCTGTGATCTTAAGCGCAAGATCGA 299
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 242 TGCCCTAGATCCAGTAGGAGGGGTTTACAGGACAATCTGTGATCTTAAGTGCAAGATCGA 301
Query 300 GATCGTTCAGGCTGAGCTTAACTTTACTCGTCAGCAAATCGCTATGTGTCGCTCTCTAGC 359
| | |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 302 GTTTGTTCAGACTGAGCTTAACTTAACTCGTCAGCAAATCGATATGTGTCGCTCTCTAGC 361
Query 360 TCAGCAGCAGCAGAGGCAAAGGCAAGATCTTCCATATGGCTGCTATTCCTAT-GAACA-T 417
|||| ||||||| |||||||||||| ||||||||||| ||||| |||||| | ||| | |
Sbjct 362 TCAGGAGCAGCATAGGCAAAGGCAAAATCTTCCATATCGCTGCAATTCCT-TCGAA-AGT 419
Query 418 CTATTACAACAAGATGAAGATGAATACGTTAATGTCGATGGTTTTGATCTTCAGAACATG 477
|||||||||||||| | |||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 420 CTATTACAACAAGACGGAGATGAATACGTTAATGTGGATGGTTTAGATCATCAGAACATG 479
Query 478 CAACAACATCAGGAGATGCAGCAGCAGCAGCAACCGAATCCAAT-AAACTACGAGATGTT 536
|||||||| || ||||||||||||||||| || |||||| | ||||||||| |||||
Sbjct 480 CAACAACAACAAGAGATGCAGCAGCAGCAACA---GAATCCG-TCAAACTACGATATGTT 535
Query 537 TTTGGAGATGCCTGAACAAACTAGCAAGGTAAAGCTTGAGGAGGTAAAAATCTCTGACCA 596
||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 536 TTTGGAGATGCCTGAACAAACCAGCAAAGTAAAGCTTGAGGAGGAAAAAATCTCTGACCA 595
Query 597 GGGAGAAA-CAATCTCGTGA 615
| || ||| ||||||| |||
Sbjct 596 GAGAAAAAACAATCTCATGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5