BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476431
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73010.1 | Symbols: ATPS2, PS2 | phosphate starvation-induce... 1583 0.0
> AT1G73010.1 | Symbols: ATPS2, PS2 | phosphate starvation-induced
gene 2 | chr1:27464572-27466256 REVERSE LENGTH=1172
Length=1172
Score = 1583 bits (857), Expect = 0.0
Identities = 1045/1130 (92%), Gaps = 36/1130 (3%)
Strand=Plus/Plus
Query 1 ATTCACAAACCAACAAGAACTCAGAGAGAGAGATCCATCAATTGGAATCACTAATTTCTC 60
||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 2 ATTCACAAACCAACAAGAACTCA-A-AGAGAGATCCATCAATTAGAATCACTAATTTCTT 59
Query 61 TAGAAAATTT-CTGAGTCATGGCTTACAATAGCAAT---AACAAGAACAGCAACAACATT 116
||| |||||| ||||||||||||||||||||||||| || || |||| ||||||||||
Sbjct 60 TAG-AAATTTCCTGAGTCATGGCTTACAATAGCAATAGCAATAACAACAACAACAACATT 118
Query 117 GTCGTTGTTTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATAATTGGGTAATC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GTCGTTGTTTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATAATTGGGTAATC 178
Query 177 GATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACA 238
Query 237 CTCATGGATCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTGAGGAGATCAAA 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTCATGGACCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTGAGGAGATCAAA 298
Query 297 CAAGTCTTGAGAACAATCCCAATCCATCCACGTGTCGTCCCTGCCATCAAATCTGCTCAT 356
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 299 CAAGTCTTGAGAACAATCCCAATTCATCCACGTGTCGTCCCTGCCATCAAATCTGCACAT 358
Query 357 GATTTAGGGTGTGAACTGAGGATAGTGAGTGATGCAAACATGTTTTTCATCGAGACCATC 416
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 GATTTAGGGTGTGAGCTTAGGATAGTGAGCGATGCAAACATGTTTTTCATCGAGACCATC 418
Query 417 GTTGAACATCTCGGGATTAGTGAATTATTCTCTGAGATCAACTCGAACCCAGGATATGTC 476
|||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 419 GTTGAACATCTCGGAATTAGCGAACTCTTCTCTGAGATCAACTCGAACCCAGGATATGTC 478
Query 477 GATGAACGTGGCACATTGAGAATCTCTCCCTACCACGACTTCACTAAATCGTCTCATGGC 536
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 479 GATGAACGTGGCACATTGAAAATCTCTCCCTACCACGACTTCACTAAATCCCCTCATAGC 538
Query 537 TGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGCTTGATCATTGAGAGAATTCAA 596
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 539 TGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGTTTGATCATTGAGAGGATTCAA 598
Query 597 CAATCTTTAGCTAAAGAAGGGAAGAAGAAAATGATCTATCTAGGAGATGGAGCTGGTGAT 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 599 CAATCTTTAGCTAAAGAAGGGAAGAAGAAAATGATCTATCTAGGAGATGGAGCTGGCGAT 658
Query 657 TACTGTCCGAGTTTGAAACTAAACACTGAAGATTACGTGATGCCACGTAAGAATTTCCCG 716
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TACTGTCCAAGTTTGAAACTAAACACTGAAGATTACGTGATGCCACGTAAGAATTTCCCT 718
Query 717 GTATGGGATCTGATTAGTAAAAATCCGATGCTGATTAAAGCAGGGATTAGAGAATGGACT 776
||||||||||| |||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 719 GTATGGGATCTAATTAGTCAAAATCCAATGCTGATTAAAGCAGCGATTAGAGAATGGACC 778
Query 777 GATGGTCAAAGCTTGGAGATGATATTAATAGGAACAATCGAAGAGATTATATTGGAGGAA 836
||||| |||||| ||||||||||||| |||||||| ||||| ||||||| ||||||||||
Sbjct 779 GATGGCCAAAGCATGGAGATGATATTGATAGGAACGATCGAGGAGATTAGATTGGAGGAA 838
Query 837 GAGAAGGAGAAGATGTTGACTAGTGCGGAGAACAATTGCAAGTTGCAGACTATCTCTGTC 896
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||
Sbjct 839 GAGAAGGAGAAGATGTTGACTAGTGCGGAGAATAATTGCAAGATGCAGACCATCTCTATC 898
Query 897 GGGATTAATAATGTTCATCATGAACCAATATTGCCTCGTGCTCTTCGTGTGTCTCAGTCT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGGATTAATAATGTTCATCATGAACCAATATTGCCTCGTGCTCTTCGTGTGTCTCAGTCT 958
Query 957 AGTTAGATGTTTTTGAAATAGTGGAGGAAGAAGATTT-C---T-T-------CTTC--C- 1001
||||||| ||||||||||||||||||||||||||||| | | | |||| |
Sbjct 959 AGTTAGACGTTTTTGAAATAGTGGAGGAAGAAGATTTACAACTGTGGTGTTTCTTCTTCC 1018
Query 1002 T--TATATGCTTGATTTGTAGTA--T----T-CCAAAGAGATTGGAATTTATCCTATATA 1052
| ||||||| | |||||||||| | | ||||| |||||| ||||||||||| | |
Sbjct 1019 TCATATATGCATAATTTGTAGTACGTACGATTCCAAAAAGATTG-AATTTATCCTA-A-A 1075
Query 1053 TTGTGTGAGTGTTTGACGATGAAATTGCAAGAAGATTGTGATTTTTGTTT 1102
|| | | ||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 1076 TTAA-T-ATTGTATGACGATGAAATTGCAAGAAGATTGCGATCTTTGTTT 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5