BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476432
Length=2526
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73020.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 3783 0.0
> AT1G73020.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632);
Has 1198 Blast hits to 1128 proteins in 154 species:
Archae - 0; Bacteria - 0; Metazoa - 809; Fungi - 158; Plants
- 25; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
| chr1:27469534-27473554 REVERSE LENGTH=2551
Length=2551
Score = 3783 bits (2048), Expect = 0.0
Identities = 2403/2566 (94%), Gaps = 58/2566 (2%)
Strand=Plus/Plus
Query 1 TTTCAAATTCAAACCCCGAAGGC-TTTGTCTTGTCTCTTCCA-TTCTCCAGAAACG-TTT 57
||||||||||||||||| || || |||||||||||||||||| ||| ||||||||| |||
Sbjct 2 TTTCAAATTCAAACCCCAAATGCTTTTGTCTTGTCTCTTCCATTTC-CCAGAAACGTTTT 60
Query 58 TCTGAATTAACGCAAGATTCAAATTCGTGAGAGATAACGAGAGATACAtt---ttttttt 114
| |||| ||| | |||||||||||||||||||||| ||| || || ||| | ||||
Sbjct 61 TTTGAAGTAATGGAAGATTCAAATTCGTGAGAGAT-ACG-TAG-TAAATTAGGTCCTTTT 117
Query 115 AAAGGAATGTTGGAATCGTATTCTTGATTGTTGCAGTGTTCCGACTTTAAAACCCTGATC 174
||||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 118 CGTGGAATGTTGGAATCGAATTCTTGATTTTTGCAGTGTTCTGAC-TTAAAACCCTGATC 176
Query 175 CCCTTTTGTGGCCCAGAAACCGGAAAATTAGATTAATTACAGGGGAGGAAAAGTAGTTCA 234
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 177 CCCTTTTGTGGCCCAGAAACCGGAAAATTAGATTAATTACAGAGGA-GAAAAGTAGTTCA 235
Query 235 GAGaaaaaaaaaGTGAATAAA---GG------T-G-G---A-AC-------C--TTTGAG 270
||| |||||||||||||||| || | | | | || | ||||||
Sbjct 236 GAG-GAAAAAAAGTGAATAAAGGTGGATTCTTTGGTGAATACACATTTGGGCATTTTGAG 294
Query 271 TCAGATCTTAGAAGAATGAGGGCTTT-CAGCTACTGAGAAGAAATCTC-AAATTTTTCTT 328
||||||||||||| || || ||||| ||||||||||||||||||||| ||||| | |||
Sbjct 295 TCAGATCTTAGAAAAAGGA-AGCTTTCCAGCTACTGAGAAGAAATCTCAAAATTCTGCTT 353
Query 329 GTGTGAGT-CGGTGTTTGGAAATGAATGGGAGTAATGGGGAGGAGCGAGTTGTTCACGAG 387
|||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTGTGA-TAGGGTTTTTGGAAATGAATGGGAGTAATGGGGAGGAGCGAGTTGTTCACGAG 412
Query 388 GTTGCAATGGTGGTTCCTAAGAGGGTTCT-G--GAAGAAGAAGGAAACTGTGTTGAGTTT 444
||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||
Sbjct 413 GTTGCAATGGTGGTTCCTAAGAGGGTTCTGGAAGAAGAAGAAGGAGACTGTGTTGAGGTT 472
Query 445 TTGGTGACTGAACTAAAGAAGAGAGGGATGATTGTTGATAGAGTCGTCGGTCTCGCAGAT 504
||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| || ||
Sbjct 473 TTGGTGACTGAGCTAAGGAAGAAAGGGATGGTTGTTGATAGAGTCGTCGGTCTTGCTCAT 532
Query 505 GAGTTTCTCAAGGTCGCAGCTCCTTTGGAGACCTTGGGCAATGCAGCAGCAGAGCTTCAT 564
|||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct 533 GAGTTTCTCAAGGTAGCAGCTCCTTCGGAGATCTTGGGCAATGCAGCTGCAGAGCTTCAT 592
Query 565 ATACGTAAACCTACTCGTCTCGGAATTGATCTGCCCTTTGAGATGCAAGGGTCTGAGGCT 624
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 593 ATACGCAAACCTACTCGTCTCGGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCT 652
Query 625 TTCATTCGGCAACCTGATGGGTTACTGTTCAGCTGGTTTGAACGTTTTCGGTGCTATCAA 684
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 653 TTCATTCGGCAACCTGATGGGTTATTATTCAGCTGGTTTGAACGTTTTCGGTGCTATCAA 712
Query 685 CATCTTATTTACGGAATTGTAAACTGTGGTGGATACGATGTCACTCTGAAACTTAACGGC 744
||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 713 CATCTTATTTATGGAATTGTAAACTCTGGTGGACACGATGTCACTCTGAAACTTGACGGC 772
Query 745 AGAGTGTTTTGTTGGGTAGCAGGGGAATCATTACTTCGAAGGTTGGAATCAGAGGGCGTC 804
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGAGAGTTTTGTTGGACAGCAGGGGAATCATTACTTCGAAGGTTGGAATCAGAGGGCGTC 832
Query 805 ATTAAACAAATGTTTCCTCTTCATGATGAATTCAAGAGGAAGGAACTTCTCCAAACTTGG 864
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct 833 ATTAAACAAATGTTTCCTCTTCATGATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGG 892
Query 865 GCATTAAATTGGTGGAACTTCACAAACCAACCAATTGATCAGATCTACTCTTACTTCGGT 924
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 893 GCATTAAATTGGTGGAACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGT 952
Query 925 GCAAAGATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTCCA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GCAAAGATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTCCA 1012
Query 985 GCCTTACTGGGGTTTATAGTGCAGATGGTTGATTTTGGATCCTTGCAGTTTCTTGCTCTC 1044
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GCCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGGATCCTTGCAGTTTCTTGCTCTC 1072
Query 1045 CCAATTTTCTTTGTGAGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGT 1104
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CCAAGTTTCTTTGTGGGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGT 1132
Query 1105 AAAAACGCGGCCTTGTTAGCTAGATGGCAAATTAATTGTTTAGTTGGCCCCAGCCAAGGA 1164
||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1133 AAAAATGCGGCCTTGTTAGCCAGATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGA 1192
Query 1165 TATAGATTTCTCGGAATGGAATGGAGTTCCCTTCCGTTTCCAAAGGAGCTTATTAAGAAT 1224
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1193 TATAGATTTCTCGGAATGGAATGGAGTTCCCTTCCTTTTCCAAAGGAGCTTATTAAGAAT 1252
Query 1225 CTCGGAAATGAGAGATCCAAAGAGAAGGAAGCATATCAAAGATATGAATGGTTTGCTTAT 1284
||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||
Sbjct 1253 CTCGGAAATGAGAGAGCCAAAGAGAAGGAAGCCTACCAGAGATATGAATGGTTTGCTTAT 1312
Query 1285 CGCAAGAGGTTTAGGAATGATGTTCTAGTTATCATGAGCATTATCTGCCTCCAACTTCCA 1344
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1313 CGCAAGAGGTTTAGGAATGATGTTCTTGTTATCATGAGCATTATCTGCCTCCAACTTCCA 1372
Query 1345 TTTGAGCTGGCGTATGCTCATATTTTCGAGATTATCACATCTGACATAATCAAGTATGTA 1404
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1373 TTTGAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAGTACGTA 1432
Query 1405 TTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCTAGGAGGCAAAGTATCT 1464
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1433 TTGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCTAGGAGGGAAAGTATCT 1492
Query 1465 GTCAAGCTGATAAATCGAGAAATCAACGAGAGTGTGGAATATCGAGCTAATAGCTTGATT 1524
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1493 GTCAAGCTGATAAACCGAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATT 1552
Query 1525 TACAAAGTTTTTGGGCTCTATTTTATGCAGACATACATTGGGATCTTCTATCACGTTCTT 1584
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1553 TACAAAGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTT 1612
Query 1585 TTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGTTAATAATCTCACAG 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 TTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGTTAATAATCTCACAG 1672
Query 1645 GTTTTCTGGACTTTGATGGATGGTTCTTTACCTTATCTTAAGTACAGCTACAGAAAATAT 1704
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1673 GTTTTCTGGACTTTGATGGATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATAT 1732
Query 1705 AGAGCTAGGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCC 1764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CGAGCTAGGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCC 1792
Query 1765 TCAAGAGTGGAGAAGGAATATTTCAAGCCTACATATTCAGCAAGCATTGGAGTAGAACTT 1824
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1793 TCAAGAGTGGAGAAGGAATATTTCAAGCCTACATATTCAGCAAGCATTGGGGTAGAACTT 1852
Query 1825 GAAGATGGACTTTTTGATGATTCCCTCGAGCTGGCTTTGCAGTTTGGAATGATTATGATG 1884
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 GAAGATGGACTTTTCGATGATTCCCTCGAGCTGGCTTTGCAGTTTGGAATGATTATGATG 1912
Query 1885 TTTGCTTGTGCCTTCCCTCTTGCTTTTACCCTTGCTGCAGTGAGCAATGTAATGGAAATA 1944
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1913 TTTGCTTGTGCCTTCCCTCTTGCTTTTGCCCTTGCTGCAGTGAGCAATGTAATGGAAATA 1972
Query 1945 AGAACAAATGCTTTAAAGCTATTGGTGACACTTCGAAGACCTCTTCCTCGTGCTGCTGCA 2004
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1973 AGAACAAATGCTTTAAAGCTTTTGGTGACACTTCGAAGACCTCTTCCTCGTGCTGCTGCA 2032
Query 2005 ACAATTGGAGCTTGGTTAAACATATGGCAGTTTCTAGTAGTAATGTCCATATGCACAAAC 2064
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2033 ACAATTGGAGCTTGGTTAAACATCTGGCAGTTTCTAGTAGTTATGTCCATATGCACAAAC 2092
Query 2065 TCGGTACTCTTGGTATGCTTATATGATCAAGAAGGCAAATGGAAGATTGAACCGGGGCTC 2124
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2093 TCGGCACTCTTGGTATGCTTATATGATCAAGAAGGCAAATGGAAGATTGAACCGGGACTC 2152
Query 2125 GCGGCAATTCTCATCATGGAACATGTACTTTTGCTTCTGAAATTTGGTCTCTCTCGTCTC 2184
|| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 2153 GCCGCAATTCTCATCATGGAACATGTACTCTTACTTCTGAAATTTGGACTCTCTCGTCTC 2212
Query 2185 GTCCCTGAAGAGCCTGCTTGGGTTAGAGCCAGTCGTGTGAAGAATGTGACACAAGCACAA 2244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2213 GTCCCTGAAGAGCCTGCTTGGGTTAGAGCCAGTCGTGTGAAGAACGTGACACAAGCACAA 2272
Query 2245 GACATGTACTGTAAACAGCTCTTGAGAAGCATTTCTGGTGAATT-AGCTTCCATGACAAA 2303
||||||||||||||||||||||| |||||||||||||||||||| | |||| |||||||
Sbjct 2273 GACATGTACTGTAAACAGCTCTTAAGAAGCATTTCTGGTGAATTTAA-TTCCTTGACAAA 2331
Query 2304 ACCTGAACAAGAACAAGAACAACAAGACTCGGGAGCGCTTTTGACCTGAAAAATCAGAAA 2363
|||||||||||||||| ||||||||||| | |||||||||||||||||| || |||||
Sbjct 2332 ACCTGAACAAGAACAA---CAACAAGACTCAG-AGCGCTTTTGACCTGAAAGATAAGAAA 2387
Query 2364 CAAAGAACACCAAAAGGCTCTCTCtttttttttGTGTGACAGTTTGATTTTTCGTTGCCA 2423
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 2388 CAAAGAACACCAAAAGGCTCTCACTTTTT----GTGTGACAGTTTGATTTTTCGTTGCCA 2443
Query 2424 CCTTTTGTGCATAGAAACTGTGTGAGA-T--CTTGAAGACTTTGTATCTTCGGTTTTGTC 2480
|||||||||||||| | |||||||| | | ||||||||| |||||||||||||||||||
Sbjct 2444 CCTTTTGTGCATAGTAGCTGTGTGATAATATCTTGAAGACATTGTATCTTCGGTTTTGTC 2503
Query 2481 TATAACACGTTAACGTACGAGGAAATCATTATAATATATATTTGAT 2526
|||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2504 TATAACACGTTAACTTATGAGGAAATCATTATAATATATATTTGAT 2549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125367190557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5