BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476433
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73030.1 | Symbols: VPS46.2, CHMP1A | SNF7 family protein | ... 1583 0.0
AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sorti... 649 0.0
> AT1G73030.1 | Symbols: VPS46.2, CHMP1A | SNF7 family protein
| chr1:27473826-27475122 FORWARD LENGTH=998
Length=998
Score = 1583 bits (857), Expect = 0.0
Identities = 939/979 (96%), Gaps = 4/979 (0%)
Strand=Plus/Plus
Query 1 AACGCGTCGAGATATTTT-CCTAAATACAGAGAAAACCCTAAAGTCTCTGTTTTTGCGAA 59
|||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||
Sbjct 4 AACGCGTCGAGATATTTTCCCCAAATACAGAG-AAACCCTAAAGTCTCTGTTTTTGAGAA 62
Query 60 TTTTCTCTACAGATAGATCGAAGCTAATT-ATCTAGAGGAATCGATTCAACATGGGTAAC 118
|||| ||||| |||||||| |||| |||| |||||||||||| ||| |||||||||||||
Sbjct 63 TTTT-TCTACCGATAGATCCAAGCGAATTGATCTAGAGGAATTGATCCAACATGGGTAAC 121
Query 119 ACAGATAAGCTGATGAATCAGATATTCGATTTGAAATTCACGTCCAAGTCTCTGCAAAGG 178
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 122 ACAGATAAGCTGATGAATCAGATATTCGATTTGAAATTTACGTCAAAGTCTCTGCAAAGG 181
Query 179 CAATCAAGGAAGTGTGAGAAGGAAGAGAAAGCAGAGAAATTGAAGGTGAAGAAGGCGATC 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 182 CAATCAAGGAAGTGTGAGAAGGAAGAGAAAGCAGAGAAATTGAAGGTGAAGAAGGCTATC 241
Query 239 GAGAAGGGGAACATGGATGGTGCTCGGATCTACGCTGAGAACGCCATTCGTAAGCGTAGC 298
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GAGAAGGGTAATATGGATGGTGCTCGGATCTACGCTGAGAACGCCATTCGTAAGCGTAGC 301
Query 299 GAGCAGATGAACTACCTCCGTCTCGCTTCTCGCCTGGACGCTGTTGTTGCTCGTCTTGAT 358
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 302 GAGCAGATGAACTATCTCCGTCTCGCTTCTCGCCTTGACGCTGTTGTTGCTCGTCTTGAT 361
Query 359 ACTCAGGCTAAGATGACCACCATCACCAAATCCATGACCAATATCGTCAAGTCCCTTGAG 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 362 ACTCAGGCTAAGATGACCACCATCACCAAATCCATGACCAATATCGTCAAATCCCTTGAG 421
Query 419 TCTTCGCTTGCCACAGGGAATCTACAGAAGATGTCAGAGACAATGGATTCATTCGAGAAG 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCTTCTCTTGCCACAGGGAATCTACAGAAGATGTCAGAGACAATGGATTCATTCGAGAAG 481
Query 479 CAGTTTGTGAACATGGAGGTCCAAGCTGAGTTCATGGAGAATGCTATGGCTGGTTCAACT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CAGTTTGTGAACATGGAGGTCCAAGCTGAGTTCATGGAGAATGCTATGGCTGGTTCAACT 541
Query 539 TCATTGTCCACTCCAGAAGGCGAAGTCAACAGCCTTATGCAGCAGGTTGCAGATGACTAT 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 542 TCATTGTCCACTCCAGAAGGCGAAGTCAACAGCCTTATGCAGCAGGTGGCAGATGACTAT 601
Query 599 GGTTTGGAAGTCTCTGTGGGACTTCCTCAGCCTGCTGGTCATGCCATTCCTACTAAGACA 658
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 602 GGTTTGGAAGTCTCTGTGGGGCTTCCTCAGCCTGCTGGTCATGCCATTCCTACTAAGACT 661
Query 659 GAGGAGAAAGTCGATGAGGACGATTTGTCAAGGAGGCTTGCAGAGCTTAAAGCCAGAGGA 718
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 662 GAGGAGAAAGTCGATGAGGATGATTTGTCGAGGAGGCTTGCGGAGCTTAAAGCCAGAGGA 721
Query 719 TAAGTGCGCTAACCTACATCCGTGCTTGGACTACCTGCCACTTTGCACGCGATCCTTATC 778
||| |||||||||| |||| | |||||||| |||||||||||||||| ||||||||||||
Sbjct 722 TAAATGCGCTAACCAACATTCATGCTTGGATTACCTGCCACTTTGCATGCGATCCTTATC 781
Query 779 GAATTGTTGCTTCTATTTTCTGCAAACATGGGCGTATTTATGTATATTGCTCACTTTGAA 838
||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||||||
Sbjct 782 GAATTGTTGCTTCTATTATCCGCAAACACGGGCGTATTTGTGTATATTGCTCACTTTGAA 841
Query 839 ATATGCTTTGTTTATAACTTTATATAAAAAACCTTCGTGTGGTTTTAGTTTTTACCATTT 898
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 842 ATATGCTTTGTTTATAACTTTATATAAAAAACCTTCGTGTGTTTTTAGTTTTTACCATTT 901
Query 899 TAATGATATGCTTTCCTTTTGAGTTGTGCATTAAAGAGTGTTTTGCTCAGTCGCTTTTGG 958
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 902 GAATGATATGCTTTCCTTTTGAGTTGTTCATTAAAGAGTGTTTTGCTCAGTCACTTTTGG 961
Query 959 TCTCATGGACTAAGATACA 977
|||||||||||||||||||
Sbjct 962 TCTCATGGACTAAGATACA 980
> AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting
46.1 | chr1:6099089-6100315 FORWARD LENGTH=895
Length=895
Score = 649 bits (351), Expect = 0.0
Identities = 537/628 (86%), Gaps = 7/628 (1%)
Strand=Plus/Plus
Query 110 ATGGGTAACACAGATAAGCTGATGAATCAGATATTCGATTTGAAATTCACGTCCAAGTCT 169
|||||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||||
Sbjct 122 ATGGGTAATACAGATAAGCTGATGAACCAGATCTTTGAATTGAAATTTACGTCAAAGTCT 181
Query 170 CTGCAAAGGCAATCAAGGAAGTGTGAGAAGGAAGAGAAAGCAGAGAAATTGAAGGTGAAG 229
||||| |||||| | |||||||| || || || |||| | | ||||| | ||||| |||
Sbjct 182 CTGCAGAGGCAAGCTAGGAAGTGCGAAAAAGAGGAGAGATCGGAGAAGCTCAAGGTAAAG 241
Query 230 AAGGCGATCGAGAAGGGGAACATGGATGGTGCTCGGATCTACGCTGAGAACGCCATTCGT 289
|| || || ||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct 242 AAAGCCATTGAGAAAGGTAACATGGATGGTGCTCGGATCTATGCCGAGAACGCCATTCGC 301
Query 290 AAGCGTAGCGAGCAGATGAACTACCTCCGTCTCGCTTCTCGCCTGGACGCTGTTGTTGCT 349
|| || |||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct 302 AAACGCAGCGAGCAGATGAACTACCTTCGTCTCTCTTCTCGATTGGACGCTGTTGTTGCT 361
Query 350 CGTCTTGATACTCAGGCTAAGATGACCACCATCACCAAATCCATGACCAATATCGTCAAG 409
|| || ||||| |||||||||||| | |||||||||||||| |||||||| || |||||
Sbjct 362 CGACTCGATACCCAGGCTAAGATGGCTACCATCACCAAATCGATGACCAACATTGTCAAA 421
Query 410 TCCCTTGAGTCTTCGCTTGCCACAGGGAATC-TACAGAAGATGTCAGAGACAATGGATTC 468
||||| || || || ||| |||| || || | ||||||||||||| ||||| ||||||||
Sbjct 422 TCCCTCGAATCGTCTCTTACCACTGGCAA-CTTACAGAAGATGTCTGAGACGATGGATTC 480
Query 469 ATTCGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTCATGGAGAATGCTATGGC 528
|| ||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 481 GTTTGAGAAACAGTTTGTGAACATGGAAGTCCAAGCTGAGTTCATGGATAATGCAATGGC 540
Query 529 TGGTTCAACTTCATTGTCCACTCCAGAAGGCGAAGTCAACAGCCTT-ATGCAGCAGGTTG 587
||| || ||||||||||| ||||||||||| ||||||||||| ||| |||||||| || |
Sbjct 541 TGGCTCTACTTCATTGTCGACTCCAGAAGGAGAAGTCAACAG-CTTGATGCAGCAAGTAG 599
Query 588 CAGATGACTATGGT-TTGGAAGTCTCTGTGGGACTTCCTCAGCCTGCTGGTCATGCCATT 646
||||||| || ||| || ||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 600 CAGATGATTACGGTCTT-GAAGTTTCTGTTGGACTACCTCAGCCTGCTGGTCATGCCATT 658
Query 647 CCTACTAAGACAGAGGAGAAAGTCGATGAGGACGATTTGTCAAGGAGGCTTGCAGAGCTT 706
||||| ||||| || |||||||| || ||||| ||||| | ||||| ||||| ||||||
Sbjct 659 CCTACCAAGACTGAAGAGAAAGTTGAGGAGGATGATTTAACCAGGAGACTTGCCGAGCTT 718
Query 707 AAAGCCAGAGGATAAGTGCGCTAACCTA 734
||||||||||| ||| | |||||||||
Sbjct 719 AAAGCCAGAGGTTAATTA-GCTAACCTA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5