BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476435
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73050.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 2754 0.0
> AT1G73050.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr1:27476565-27478534 REVERSE LENGTH=1659
Length=1659
Score = 2754 bits (1491), Expect = 0.0
Identities = 1603/1659 (97%), Gaps = 0/1659 (0%)
Strand=Plus/Plus
Query 1 ATGACGAAACGGATTGATTCTTCTCTTCTCTACACGGCGTTCGTTGTGCTTCTTCTTCTT 60
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1 ATGACGAAACGGATTGATTCTTCTCTTCTCTACACGGCGCTCGTAGTGCTTCTTCTTCTT 60
Query 61 GGAGTAGTTCCTTGGTCTAATGCAAGGCCACGCGTTAATCGACGTCCCGGTTTCATGCGA 120
|||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 GGAGTAGTTCATCGCTCTAATGCAAGGCCACGCGTTAATCGACCTCCCGGTTTCATGCGA 120
Query 121 TTCGTATCGAACGCAACTGATTTTGCGTCGGAGGATTACTACGATTACATAATCGTCGGA 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCATATCGAACGCAACTGATTTTGCGTCGGAGGATTACTACGATTACATAATCGTCGGA 180
Query 181 GGAGGAACGGCGGGATGTCCATTAGCCGCCACACTTTCGCAATCTTTCCGGGTTCTTCTG 240
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 181 GGAGGAACGGCGGGATGTCCACTAGCCGCCACACTTTCGCAATCTTTCCGAGTTCTTCTG 240
Query 241 CTAGAACGCGGCGGCGTTCCGTACAACAGACCTAACGTGATGTCACACGACGGTTTCTTG 300
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTAGAACGCGGTGGCGTTCCCTACAACAGACCTAACGTGATGTCACACGACGGTTTCTTG 300
Query 301 TCCACTCTCACTGACGTCAACAATTTTGACTCGCCGGCTCAGTCCTTCATCTCTGAGGAA 360
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 301 ACCACTCTCACTGACGTCAACAATTTCGACTCGCCGGCTCAGTCTTTCATCTCTGAGGAA 360
Query 361 GGAGTTCCTAACGCCAGAGGTCGTGTTCTTGGAGGAAGCAGCGCAATCAATGCTGGGTTC 420
|||||||||||||| ||||||||||||||||||||||| || || ||||||||||| |||
Sbjct 361 GGAGTTCCTAACGCGAGAGGTCGTGTTCTTGGAGGAAGTAGTGCGATCAATGCTGGATTC 420
Query 421 TATAGCCGTGCTGATAAACAGTTCTTTGAGAATTCGGGTCTTACTTGGGATCTGAGTAGT 480
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 TATAGCCGTGCTGATAAACAGTTCTTTGAGAATTCGGGTCTTGTTTGGGATCTGAGTAGT 480
Query 481 GTGAATCAGTCTTATGAGTGGGTGGAGAGAGCGATTGTGTTTAGACCTCAGCTCAGGACT 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GTGAATCAGTCTTATGAGTGGGTTGAGAGAGCGATTGTGTTTAGACCTCAGCTCAGGACT 540
Query 541 TGGCAGACTGCAATTAGGGATGCGTTGCTTGAAGTTGGTGTCCATCCGTTTAATGGCTTC 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGCAAACTGCAATTAGGGATGCGTTGCTTGAAGTTGGTGTCCATCCGTTTAATGGCTTC 600
Query 601 ACCTTGGAGCATAAAGTGGGGACTAAGATTGGAGGTTCCACGTTCGATCGTACTGGGAGG 660
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 601 ACCTTGGAGCATAAAGTGGGGACTAAGATCGGAGGTTCCACGTTTGATCGTACTGGGAGG 660
Query 661 AGACACAGCTCTGCAGATCTTCTCAGATATGCAAGAAGTTCCAACATTAGAGTTGCAGTT 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 AGACACAGCTCTGCAGATCTTCTCAGATATGCAAGGAGTTCCAACATTAGAGTTGCAGTT 720
Query 721 TACGCAACTGTAGAGAGAGTATTGCTGGCTTCATCTCCAAGTGACTCGGGTTCCAACGTC 780
|||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||
Sbjct 721 TACGCAACTGTAGAGAGAGTATTGCTTGCTTCATCTCCTAGTGTCTCAGGTTCCAACGTT 780
Query 781 TCTGCGATTGGAGTGGTTTACCGTGATCAGCTGGGACGTTACCATCACGCAATAATACGG 840
|||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 781 TCTGCGATTGGAGTGGTTTACCGTGATCAGCTGGGACGTTTCCATCACGCATTGATACGG 840
Query 841 GACAGAGGAGAGGTGATATTGTCAGCTGGTGCACTCGGTAGTCCACAGTTGCTTTTTCTT 900
|||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 841 GACAGAGGAGAGGTGATACTGTCTGCTGGTGCACTCGGTAGCCCACAGTTGCTTTTTCTT 900
Query 901 AGTGGGATAGGTCCAAGAAGTTATCTTTCGACTTGGGGGATCCCTGTGGCTCTTGACCAG 960
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 AGTGGGATTGGTCCAAGGAGTTATCTTTCAACTTGGGGGATCCCTGTGGCTCTTGACCAG 960
Query 961 CCTCATGTGGGAGATTTTGTGTATGATAACCCGAGGAATGGTATCTCCATTGTACCTCCG 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 CCTCATGTGGGGGATTTTGTGTATGATAACCCGAGGAATGGTATCTCCATTGTTCCTCCG 1020
Query 1021 GTTCCAATGGAGAACTCACTGATACAAGTCGTGGGTATTACTGAGGAAGGGGCTTTTCTT 1080
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1021 GTTCCAATGGAGAACTCACTGATACAAGTCGTGGGTGTTACTGAGGATGGGGCTTTTCTG 1080
Query 1081 GAGGCTGCTTCCACTGTGATTCCGTTTGCATCGCCTTTACATTCTGTGTTCATCAGAGCG 1140
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GAGGCTGCTTCGAATGTGATTCCGTTTGCATCGCCTTTACATTCTGTGTTCATCAGAGCT 1140
Query 1141 CCAGCTTCTCCTTTGTACGTCCCTGTGACAACTATAATGGAAAAGATCCTAGGTCCAGTG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCAGCTTCTCCTTTGTACGTCCCTGTGACAACTATAATGGAAAAGATCCTAGGTCCAGTG 1200
Query 1201 TCTATTGGGTTACTAAGGTTGGCGTCAACGGATGTAAGGATCAACCCAATTGTTAGGTTC 1260
|||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||| |||
Sbjct 1201 TCTATTGGTTTACTAAGGTTGGCGTCAACGGATGTGAGGATTAACCCAGTTGTTAGATTC 1260
Query 1261 AACTACTTCAGTGATCCACAGGATCTAGAGAGATGTGTCAATGGGACTAGGAAGATTGGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AACTACTTCAGTGATCCACAGGATCTAGAGAGATGTGTCAATGGGACTAGGAAGATTGGA 1320
Query 1321 GAAATACTCAGGAGCCGAGCTATGCAGGACTTTATGATCAGGGAATGGTTTGGGAACCGT 1380
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 GAAATACTCAGGAGCCGAGCTATGCAGGACTTTATGATAAGGGAATGGTTTGGGAACCGT 1380
Query 1381 AGGTTCAGGTTTGTTGGAGCTCCATTGCCTGTGGACCAATCAAATGATCTAGTGATGGCA 1440
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1381 AGGTTCAGGTTTGTTGGAGCTCCATTGCCTGTGGACCAATCAAATGATCTTGTGATGGCA 1440
Query 1441 GATTTCTGCAGACGAACTGTGAGCACAATCTGGCACTACCATGGAGGCGCTGTTGTAGGA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GATTTCTGCAGACGAACTGTGAGCACAATCTGGCACTACCATGGAGGCGCTGTTGTAGGA 1500
Query 1501 AAAGTAGTGGACTCTGATCTCAAAGTCATTGGTGTTAATTCTCTTAGACTCGTGGATGGA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AAAGTAGTGGACTCTGATCTCAAAGTCATTGGTGTTAATTCTCTTAGACTCGTGGATGGA 1560
Query 1561 TCAACCTTCAATATCTCTCCAGGGACTAATCCTCAGGCTACCTTGATGATGCTTGGAAGG 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TCAACCTTCAATATCTCTCCAGGGACTAATCCTCAGGCTACCTTGATGATGCTTGGAAGG 1620
Query 1621 TACATGGGGCTGAAGATGCTGAGAGAGAGAATGAGATAG 1659
||||||||||||||||||||||||||||| |||||||||
Sbjct 1621 TACATGGGGCTGAAGATGCTGAGAGAGAGGATGAGATAG 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5