BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476439
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73090.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 867 0.0
> AT1G73090.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
growth stages. | chr1:27488217-27490766 FORWARD LENGTH=1225
Length=1225
Score = 867 bits (469), Expect = 0.0
Identities = 526/554 (95%), Gaps = 2/554 (0%)
Strand=Plus/Plus
Query 400 AGGCTTATATCTAGAGCATGGGAAATAGCAAGCACTCGGTATGAAGATCCAAAGTTAGCT 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 AGGCTTATATCTAGAGCATGGGAAATAGCAAGCACTCGGTATGAAGATCCAAAGTTAGCT 566
Query 460 AAAATGACTGCATCCAAGTTATTCTCTACTGGAGATGCGGAAATTTCACTTGAATACTTT 519
|||||||||||||||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct 567 AAAATGACTGCATCCAAGATATTCTCTGCTGGAAATGCGGAAATTCCAGTTGAATACTTC 626
Query 520 AGCTGCCGAACAAGTCAGGGTCCACTGATCGTATCTTGGATAAATTTCTTCAAGATGGCT 579
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 627 AGCTGCCGAACAAGTCAGGGTCCACTAATCATATCTTGGATAAATTTCTTCAAGATGGCT 686
Query 580 TTGTTTCGCTCCAACAACGGCCAAATCTATGGGCGAGTTTGTGGTGGACCGGTAGTTTCA 639
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TTGTTTCGCTCCTACAACGGCCAAATCTATGGGCGAGTTTGTGGTGGACCGGTAGTTTCA 746
Query 640 ACCCTTGCCAATGCTTTAAGTCCGCTATACTTTGAGGTCACAGAAGCTATGGAAGTTATG 699
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 747 ACCCTTGCCAATGCTTTCAGTCCACTATACTTTGAGGTCACAGAAGCAATGGAAGTAATG 806
Query 700 GCCACAGAAGAACCCTGCGATGTTGCATGCAAATTTGGTGATGGGCTTCTTGCTATTGAA 759
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 807 GCCACAGAAGAACCCTGCGATGTAGCGTGCAAATTCGGCGATGGGCTTCTTGCTATTGAA 866
Query 760 GATTACCCACAAGGCTTCCCTCGACCAGCAAAGCATCCGTATCCATTCAACGACAGTGTG 819
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 867 GATTACCCACAAGGCTTCCCTCGACCAGCAAAACATCCTTATCCATTCAACGACAGTGTC 926
Query 820 GTCATATACATACGCCACATCGGTCCAGGTGTATGCGTGGGACAGGCATGGCAAGAAGGT 879
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 927 GTCATTTACATACGGCACATCGGTCCAGGTGTATGCGTAGGACAGGCATGGCAAGAAGGT 986
Query 880 AAAGAACTGCAACAAGTTCCTCAAAGATTATGCTCCGACATT-TTAATGGTCAAACAATA 938
| |||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||
Sbjct 987 AGAGAACTGCAACAAGTTCCTCAACGATTATGCTCGGACATTCTTA-TGGTCAAACAATA 1045
Query 939 CAGATGAATTAAGA 952
||||||||||||||
Sbjct 1046 CAGATGAATTAAGA 1059
Score = 619 bits (335), Expect = 1e-176
Identities = 377/398 (95%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 1 GGGAAAATTTTCGTTTGGCCGGAGATGAAGATAGGGGCGTTTCGGGATAGTTGGCTTATA 60
||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 24 GGGAAAATTTTCGTTTGGCCGGAGATGAAGATAGGGGCGGTTCAGGAGAGTTGGCTTATA 83
Query 61 CGGGCTCCGGTACTTTCTCCGGCGGTTCACGGCTCAATTCGCCGGAATCGAAAGTCGCAG 120
||| ||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 84 CGGACTCCGGTACTTAGGCCGGCGGTTCAAGGCTCAATTCGCCGGAATGGAAAGCCGCAG 143
Query 121 CTTGGGTTTCGTCTCTCGAACAGGTTGTCTCGTGGTGTGGTTCTGGCTGTTCAAGGAGGA 180
|||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 144 CTTGAGTTTCCTCTCTCGAACAGGTTGTCTCGTTGTGTGGTTATGGCTGTTCAAGGAGGG 203
Query 181 AGAGGATATGAATCTCCATGGGATGAAAAACCCTTTGAAACTCTTCCCACTGGTAAAAGG 240
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 204 AGAGGATATGAATCTCCATGGGATGAAAAACCCTATGAAACTCTTCCTACTGGTAAAAGG 263
Query 241 GTTTACGTTGATGAATCTGATGTTGTGACGTTTCTTGATCCACCCAAGGAGTTGATTCCA 300
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 264 GTTTATGTTGATGAATCTGATGTTGTGACGTTTCTTGATCCCCCCAAGGAGTTGATTCCA 323
Query 301 TTAGATCCTGCTTCATATAACCCGGCTGCTTATCTCTGGAAAAAGATTGAAGACATCCCC 360
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TTGGACCCTGCTTCATATAACCCGGCTGCTTATCTCTGGAAAAAGATTGAAGACATCCCC 383
Query 361 GAAGAGAGGCGCCACCATTTGCTGCAATTATTAGAGCC 398
||||||||||||||||||||||||||||||||||||||
Sbjct 384 GAAGAGAGGCGCCACCATTTGCTGCAATTATTAGAGCC 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5