BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476442

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73120.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   573    5e-163


> AT1G73120.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to oxidative stress; 
EXPRESSED IN: root, cultured cell; Has 36 Blast hits 
to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:27497186-27497950 REVERSE 
LENGTH=574
Length=574

 Score =  573 bits (310),  Expect = 5e-163
 Identities = 375/406 (92%), Gaps = 5/406 (1%)
 Strand=Plus/Plus

Query  1    ATATATTTGCCTACATCAGATTCTTCATACACACACATTGTAATCAAGAGATCATAGAGA  60
            |||||||| |||||||||||||||||||    ||||||||||||||| ||| ||||||||
Sbjct  5    ATATATTTACCTACATCAGATTCTTCAT----ACACATTGTAATCAATAGACCATAGAGA  60

Query  61   TTGACATGGCGACTTCTACCTTCTCGTCTCGTGGAGCACAAACCATGAACACCATGTTCG  120
            || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  61   TTTACATGGCGACTTCTACCTTCTCTTCTCGTGGGGCACAAACCATGAACACCATGTTCG  120

Query  121  TCAAGCCGATGCTTAGGAAGTCGATTCACAAGAAGAGTGCGTCGCACGACATAGTCAGGG  180
            ||||||||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||
Sbjct  121  TCAAGCCGATGCTTAGGAAATCAATTCACAAGAAGAGTGCCTCGCATGATATAGTGAGGG  180

Query  181  AGACAGCGAAGACGGAGGGTTCAAGCGCCGGAGAGGAGGTGAAGACGATGAGAGGCTTCT  240
            | || | |||||| ||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct  181  ATACGGTGAAGACTGAGGGCTCTAGCTCCGGAGAGGAGGTGAAGACGATGAGAGGCTTCT  240

Query  241  ACGGCGCCGGAGAGACGTCGTCGCCGGCGAGTAGTTGGGTGCCACATGATGGAACGGGAA  300
            ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  241  ACGGCGCCGGAGAAACGTCGTCGCCGGCGAGTAGTTGGGTGCCACATGAAGGTACGGGAA  300

Query  301  TATACTATCCAAAGGGGCAAGAGAAAGTAATGCAAGATGTGCCTCCTCCTCCAGCTGGCA  360
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  301  TATACTATCCAAAGGGACAAGAGAAAGTGATGCAAGATGTGCCTCCTCCTCCAGCTGGCA  360

Query  361  GCCACGCGGACGACCTCGTTAACTGGTTCTCTTGATCCATT-GTCT  405
            ||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct  361  GCCACGCGGACGAGCTCGTTAATTGGTTCTCTTGATCCATTAGTCT  406


 Score =  128 bits (69),  Expect = 5e-29
 Identities = 99/113 (88%), Gaps = 3/113 (3%)
 Strand=Plus/Plus

Query  399  ATTGTCTATTGTTGTGATGGGTAAAACATTACAAATATATGTGTAATTAAGTTGATATGC  458
            ||||||||||||| | ||||| ||| || || |||||||||||||||||||| || ||  
Sbjct  460  ATTGTCTATTGTTCTAATGGG-AAACCA-TA-AAATATATGTGTAATTAAGTGGAAATAT  516

Query  459  AATGTCACATAGCCAATGATAATGAATAATTAATGATGATTATAAAATGAGTT  511
            | ||||| ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  517  ATTGTCATATAACCAATGATAATGAATAATTAATGATGATTACAAAATGAGTT  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5